SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10748

Length: 1220 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10748 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MADS-box transcription factor n=3 Tax=Picea abies RepID=Q9SED8_PICAB	-	-	68%
FL-Next	tr=MADS-box transcription factor; Picea abies (Norway spruce) (Picea excelsa).	-	-	82%
Sma3	MADS-box transcription factor	-	-	-

Source	Gene names
Sma3	DAL13;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60910.1	AGL8, FUL AGAMOUS-like 8 chr5:24502736-24506013 REVERSE LENGTH=242	3.0e-34	48%
RefSeq	Arabidopsis thaliana	NP_568929.1	agamous-like MADS-box protein AGL8 [Arabidopsis thaliana]	4.0e-34	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SED9

Fln msg:

Fln protein: MGRGKIEIKMIENTANRQVTFSKRKGGLLKKAHELSVLCNADIALIVFSNTGKLHDWSSSSMKKVLEKYQKSDQGLGLMDYQQQQLLCEMKRITKENESLRARLRHMNGDDINSLKLPELFHLEQQLEAAATQVRRRKDQVLDNEKTKRRNKMRRMEEENSILHEMLDQHHGQMEEDNAQINFLFCQPLNRSGTAFPAPLLRLQPNQPNLQDIGY*

Protein Length: 217

Fln nts: ACATGGGGGCACTGAGCGAGGGTTAGTGGGGTTTAACTTGGATTGCAAGCTGCTGGTGTCGTTTCTGCGATTCAAGGGTTCGGAAGGGAAGCGAAGATATTCCTGGAGAAAGAAAAGATCAATATCA_-_ATGGGGAGGGGGAAGATTGAAATAAAAATGATTGAAAATACAGCAAACAGGCAAGTCACATTCTCTAAGAGAAAAGGAGGACTTCTTAAGAAAGCTCACGAGCTCTCCGTTTTATGCAATGCAGATATTGCTCTCATCGTTTTTTCCAACACCGGCAAACTCCATGATTGGTCAAGCTCCAGCATGAAAAAAGTTCTGGAGAAGTACCAGAAATCGGATCAGGGCCTAGGACTTATGGACTATCAACAACAACAGCTATTGTGTGAAATGAAACGAATCACCAAAGAAAATGAAAGCCTTCGAGCTCGTTTAAGGCATATGAATGGCGATGACATCAATTCGTTGAAGCTTCCCGAACTCTTCCATCTCGAACAGCAGCTTGAAGCGGCCGCAACCCAAGTTCGAAGAAGAAAGGATCAAGTTTTAGACAATGAAAAAACCAAGCGAAGGAACAAGATGCGCCGTATGGAAGAAGAGAACAGCATACTGCACGAAATGCTTGACCAGCACCATGGACAAATGGAGGAGGATAACGCTCAGATTAATTTCCTATTTTGCCAACCATTAAATAGATCGGGTACTGCTTTTCCTGCACCACTACTCCGCCTGCAACCAAATCAGCCGAACTTGCAGGATATTGGATATTAA___TTACTGAACGACAGCCTGTGTCTATCATAATGAGAAGGTCATGGACTTCTCAGTAACAGTCAATTATGAAATTTCGAAGTTCGTGAGAAATTATTTCGTGTTGTGAGTACCACATTTCAGTTTAGCTATATAAATGGTCATATAACATGGTCAAGTATACTAAACTAGTGGGAAATAATTATTTAAAGCTGTGAACACCATGTTACTATAAACATATAACTTATGCTGAGAATTTCTGAAATTGCACAAATAAATTGTCAAAGCTGCACGGTGAACAAATAGTTTGAGTGATACTGATTTATCTAATGGTTTTAGAAGCGCGAGTCTAATTATAAATGCAAGTTCGTATGTTTCGCACCTCTCTGCCGATGTATATTATTTTCTGGAAGGATTCTTGTGAACAACTTCCATTAAGCGAATTATTATAAACATATGTTCGTATGTC

Fln Alignment:

Contig10748___MGRGKIEIKMIENTANRQVTFSKRKGGLLKKAHELSVLCNADIALIVFSNTGKLHDWSSSSMKKVLEKYQKSDQGLGLMDYQQQQLLCEMKRITKENESLRARLRHMNGDDINSLKLPELFHLEQQLEAAATQVRRRKDQVLDXXXXXXXXXXXXXXXXNSILHEMLDQHHGQMEEDNAQINFLFCQPLNRSGTAFXXXXXXXXXXXXXXQDIGY
Q9SED9_______________MGRGKIEIKMIENPTNRQVTFSKRRGGLTKKAQELSVLCNAEVALIVFSNTGKLHQWSSSSMKKVLERYQKSEQGLGLMDYQHQQLLFEMRRITKENESLQARLRHMRGEDINSLKLPELFNLEEQLELAGTQVRRRKDHVLDNEKTKRQNKERRLQQENMILQEMVDQHHGHMEEDNGEINFVLCQPLKRLSTAFPAPLLRLQPNQPNLQDIGY

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
101		75		25	0.996473
125		60		40	1.0
139		40	60		1.0
176		28	71		1.0
328	14			85	0.993533
369		14		85	0.993533
417	10			90	0.90298
427		90		10	0.90298
437		90		10	0.90298
535		12		87	0.992554
642	15		84		0.999986
800			14	85	0.993533
801		14		85	0.993533
802		14		85	0.993533
840	14	85			0.993533
841	14			85	0.993533
842		14	71	14	0.984337
843		14		85	0.993533
844		14		85	0.993533
845	14		85		0.993533
852	83	16			0.994512
853		16		83	0.994512
854	83	16			0.994512
855	16		83		0.994512
897		75		25	0.996473
1192	62	37			1.0
1195	33	66			1.0
1196		92		7	0.999602

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain