SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10743

Length: 1832 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10743

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Secretory carrier membrane protein n=1 Tax=Elaeis guineensis RepID=B3TLU6_ELAGV	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Secretory carrier membrane protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-
Sma3	protein transport	GO:0015031	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SCAMP	IPR007273	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein chr2:8971925-8974400 REVERSE LENGTH=282	73%
RefSeq	Arabidopsis thaliana	NP_179680.1	secretory carrier-associated membrane protein 1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002319372.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI6

Fln msg:

Fln protein: MGSRYDANPFEPEEEVNPFSDPLVRGQMPGQSNFSGGAFYTTHTGSVPSAGGSRLSPLPPEPADFSYDRGATVDIPLGTGKDFKKKERELEAKEAELKRREQELKRREEAAARAGIVLEEKNWPPFFPIIHHDITREIPTHLQRLQYTAFATWLGIVLCLVWNFVAVTIAWIRGYGVKIWFLAIIYAIAGCPGAYVLWYRPLYRAMRTESAIKFGRFFLFYLLHIGFCVFAAVAPPVVFKGKSLAGILPTIDVFSDHLLVGIFYLIGFILFTLESFISIRVLQQVYMYFRGSGKEAEMRREAARSAMRAAI*

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGGAAGACCAGGCAGGCAGAAAAGTTTAAAAGAGAAGCTTCTCAGCCGGCGGTCACATGCGACGATGTATATCCCACATTTTCAAAGCTGTTTACTTTTACACATAGGGAGAGAGGAAACCGGTCGAAGTCAAATTTCGGGGCCTCTTATTCTTTGAGTGGCCGGAGGCGTCAAGAGTGCGAGGATTTATTGGGTAAAGGAGGAGGTCAGGGCCGAGGTTCGTTTTAGTTTTTATTTTCAGAAATCAGAGCATCTAATCTTCAACACGGGCCACAATTTTCAGCG_-_ATGGGGAGCCGTTATGATGCCAATCCGTTCGAGCCGGAGGAGGAGGTCAATCCTTTTTCGGACCCGTTAGTACGAGGGCAGATGCCAGGACAGTCCAACTTTTCAGGAGGTGCATTTTACACAACACATACAGGTAGTGTTCCATCGGCTGGAGGTTCCAGGCTTTCACCACTTCCACCTGAACCAGCTGACTTCAGCTATGATCGTGGTGCCACTGTAGATATACCGCTTGGGACAGGAAAAGATTTTAAAAAAAAGGAGAGGGAATTGGAAGCAAAGGAGGCTGAGCTAAAGAGGAGAGAGCAGGAGCTAAAGCGAAGGGAAGAAGCTGCTGCCCGAGCTGGGATTGTCTTAGAGGAAAAAAATTGGCCTCCTTTTTTTCCAATCATTCATCATGATATCACAAGGGAGATTCCTACTCATCTGCAGCGGTTGCAGTATACCGCTTTTGCCACCTGGCTAGGCATTGTTTTATGTCTTGTATGGAACTTTGTTGCGGTGACAATTGCCTGGATTAGAGGATATGGGGTGAAAATTTGGTTTCTAGCTATCATCTATGCTATTGCGGGATGCCCAGGAGCTTATGTTTTGTGGTATCGGCCTCTGTATCGTGCTATGAGGACTGAAAGTGCAATAAAGTTTGGTCGCTTTTTCCTGTTTTACTTGCTTCACATTGGATTTTGTGTTTTTGCTGCTGTGGCTCCTCCGGTTGTCTTCAAAGGGAAGTCATTGGCGGGTATCCTGCCAACGATAGATGTGTTTTCTGATCACCTTTTAGTTGGGATTTTCTACCTTATTGGCTTTATCTTATTTACCTTGGAATCATTTATAAGCATTCGGGTACTTCAGCAAGTATACATGTACTTTAGGGGGTCGGGAAAAGAAGCAGAGATGAGGCGGGAGGCTGCACGAAGTGCCATGCGTGCTGCAATATAA___AAGCTGCTCATCTACATGGAAACCCTGATCTGGAAATTTTCACTCCTGTTATTTCATGTAATGTCAAGTGATCTATTTCTTCTGGTTTAACCTGCCAGCCTTGCATGTACTCGTTATTAACCTCTACATATTGGTAGTTGGAATTTTGTCAATATTACAGGAAACTGGGTGGTTTGAGAGGCACTGGAGAGAGTTGTCTGTAATTATAAACAGAGATTCATTTGTTGTTAATATTTGGATCTGTTGATAGCAAATCTGCTTCTAAGGTGTTCATGTAGTTGCGTCATTCATACTACGCACATGTTAAATTTTTTGCAGCTATTTTGTCAGGTCTCATTTAGAACCTTCATCTGCACCACTTCCCTTATTTTGTTATTTACCTTTGGGTTAAAATAGTTAGCAGTTTTGGCGGCGAAAAGGGCAAACTATCTTGATCAACTAAATAAAACTGAGTCAATGGTGACCATTTTTTGGACATTTCGAAATGGTCCTCCATTATAAATAGTTAGCTATTTGGAAGTAGGAAAATCAATAAAGGTGAAATCTCGTATCACAGCCTTCCTATTTTGGCAGAATACATTTGGAAAT

Fln Alignment:

Contig10743___MGSRYDAXXXXXXXXXXXXSDPLVRGQMPGQSNFSGGAFYTTHTGSVPSAGGSRLSPLPPEPADFSYDRGATVDIPLGTGKDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVLEEKNWPPFFPIIHHDITREIPTHLQRLQYTAFATWLGIVLCLVWNFVAVTIAWIRGYGVKIWFLAIIYAIAGCPGAYVLWYRPLYRAMRTESAIKFGRFFLFYLLHIGFCXXXXXXXXXXXKGKSLAGILPTIDVFSDHLLVGIFYLIGFILFTLESFISIRVLQQVYMYFRGSGK
D5AEI6_______________MGSRYDANPFEPEEEVNPFSDPSVRGQMPGQSNFSGGAFYTTHTGSVPSVAGSRLSPLPPEPADFSYDRGATVDIPLGTTKDFKKKEKELEAKEAELKRREQDLKRREEAAARAGIVLEEKNWPPFFPIIHHDITREIPTHLQRLQYTAFSTWLGIVLCLVWNFVAVTIAWIRGYGVKIWFLAIIYAIAGCPGAYVLWYRPLYRAMRTESAIKFGRFFLFYLLHIGFCVFAAVAPPVVFKGKSLAGILPTIDVFSDHLLVGIFYLIGFILFTLESIISVRVIQQVYMYFRGSGK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
76	25			75	0.996473
77		75		25	0.996473
78	75		25		0.996473
79		75	25		0.996473
80	75		25		0.996473
81			25	75	0.996473
91		50		50	1.0
143	20	80			0.995493
144		80		20	0.995493
147			20	80	0.995493
148		80	20		0.995493
175		60	40		1.0
359		25		75	0.996473
1138	76		23		1.0
1397	83		16		1.0
1565	10			90	0.90298
1568	10			90	0.90298
1590		55	44		1.0
1697	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain