SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10693

Length: 2725 nt

UniGene Fasta

>sp_v3.0_unigene10693
ATGGGGGAAAACGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGAGGAGAAAACCCTGAATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAAATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCCCAAATAAGATTGTCGACGTCTCTGAAAACCTTGGAGAAGTTCTCCGGGGTGATCGCATTGAAAACTCACCTTATGTGTTCGAAATGAGAGAAAGTAGACTTTGCAATGTTGTTTGCAAGATTAAGCTGGATGCAAAGACTGCAAAGAACTTCAAGGAGAAGATTGATGATGAATATCATGTTAATATGATTCTGGATAATCTACCTGTGGCAGTGGCCAGACAGAGGTCTGATGGAAATAGCCTTACTACATATGAGCATGGCTTCCGAGTTGGGTTCAAAGCAAGCTACGCAGGGAGTTCAGAAGAGAGGCACTTCATCCACAATCATTTGGCTTTTATTGTGATGTATCACAAGGATGTTGAAACTGATTCTGCACGCATAGTTGGATTTGAAGTTGCACCATTCAGTGTAAAGCATGAGTATGAACAACCATGGGATAATGTCAAAACCCGTTTGACAACTTGTGATCCAAATACCAAGCATACAGTGTCAAATTCTGAGATTCCCCAAGAAGTTGTAGAAGACAAAGAAGTTATATTCACTTATGATGTTACTTTCCGGGAGAGCCCTGTGAAATGGGCATCACGTTGGGATACTTACCTTCTTATGACAGATGATCAGATCCATTGGTTCTCTATCATCAACTCATTGATGATTGTTTTATTTCTTTCCGGAATGGTTGCAATGATCATGATGCGAACATTGTACCGGGATATCTCAAAATACAACCAATTAGAAACACAGGATGAGGCTCAAGAAGAAACTGGATGGAAATTGGTCCATGGAGATGTGTTCAGGGCCCCAACCAATGCAAGCTTACTTTGTGTCTATGTGGGAACTGGAGTTCAGTTTTTTGCCATGACACTAGTGACAATGATATTTGCAGTCCTTGGTTTCCTTTCTCCTTCGAACCGTGGAGGTTTAATGACAGCCATGCTGCTATTATGGGTGTTTATGGGTTTGTTTGCTGGGTATGCATCGTCACGTCTATATAAGATGTTCAAGGGCACAGAATGGAGGAAGAACACGCTGAAGACAGCATTCTTGTTTCCAGGCATTGCCTTTTGCATTTTCTTTATTCTCAATGCACTGATATGGGGAGAAAAATCATCTGGTGCAGTTCCTTTTGGGACTATGTTTGCCTTGGTCCTTTTATGGTTTGGAATTTCTGTGCCATTGGTCTTTGTGGGCAGTTACTTTGGCTACAAGAAACCTGCAATTGAGGATCCAGTGAAGACCAATAAAATCCCCAGGCAGATTCCAGAGCAAGCTTGGTATATGCAGCCCATTTTCTCAATACTAATTGGAGGCATTTTGCCTTTTGGAGCTGTATTCATTGAACTGTTCTTCATATTAACTTCAATATGGCTGCATCAGTTCTACTATATATTTGGGTTCCTGTTCATTGTCTTTGTGATCCTCATTGTGACATGTGCAGAGATCACCATTGTCCTGTGCTACTTTCAATTGTGCAGTGAAGATTACAACTGGTGGTGGAGATCTTATTTGACTGCAGGCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCACCAAGCTGGAGATGACAAAGCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGAGGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAAGTTTTGGTTTAGGGGAATGGTGCTTGCTCCTTTTATGTTGTTTTAGAGGTTTTTGGGTAACATTACAGGAGACACCAACGTCAATGTGCTGCTGTGGGAGTTAACACTGAATACGTATGTTCATAGATTAATCTCCCGCTACATTCTCTTGTTGAAATATAAACTCAATTCCCATTGTAATCAATTCAATGCTATATTTTATGCAGTTGAGGCCAAAACCACTTGATATTTATTGGTTTTCATGTTCCTTCAACCATGGGATAGGGTATCATACAACATTCCTAGCATCATTCTGATGAAGGATAGGATTCTTTTTATCTAAACAGAGTTTATTTTCCAGTTTCGTGAATGCTAATACGTTTTTCAATGAACAGTTGGTGTTCTTGCGAAGGTTTTGTACAATAAACAGTTGGCATTGTTCTCATTGCCGTGGCTGGCATTCGCAATTTATTCTTTGGGCTGCATCTTAAAACTACTAGTCTTTCTTTTATGTATACATA

Ace file of the UniGene sp_v3.0_unigene10693

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9STR3_RICCO	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Endosomal P24A protein, putative	-	-	2.325e-19	-

Source	Gene names
Sma3	AT4g12650; At1g55130; At2g24170; At3g13772; At4g12650; At5g25100; At5g35160; B1142B04.38; CHLREDRAFT_127873; GSVIVT00005630001; GSVIVT00017217001; GSVIVT00029040001; GSVIVT00032781001; GSVIVT00033771001; GSVIVT00034166001; MICPUCDRAFT_35093; MICPUN_96074;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fibrillarin	IPR000692	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Protein of unknown function DUF914, eukaryotic	IPR009262	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13772.1	TMN7, AtTMN7 transmembrane nine 7 chr3:4521712-4524394 REVERSE LENGTH=641	78%
RefSeq	Arabidopsis thaliana	NP_187991.1	protein transmembrane nine 7 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002324334.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: your sequence is longer than subject: 641 - 370

Fln protein: MALTAHMKVLVWASALLLLFFGANCFYLPGVAPHDFNKGDELQVKVNKLTSIKTQLPYEYYSLHYCPPNKIVDVSENLGEVLRGDRIENSPYVFEMRESRLCNVVCKIKLDAKTAKNFKEKIDDEYHVNMILDNLPVAVARQRSDGNSLTTYEHGFRVGFKASYAGSSEERHFIHNHLAFIVMYHKDVETDSARIVGFEVAPFSVKHEYEQPWDNVKTRLTTCDPNTKHTVSNSEIPQEVVEDKEVIFTYDVTFRESPVKWASRWDTYLLMTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSAFYLFLYATFYFFTKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID*

Protein Length: 642

Fln nts: ATGGGGGAAAACGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGAGGAGAAAACCCTGAATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAA_-_ATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCCCAAATAAGATTGTCGACGTCTCTGAAAACCTTGGAGAAGTTCTCCGGGGTGATCGCATTGAAAACTCACCTTATGTGTTCGAAATGAGAGAAAGTAGACTTTGCAATGTTGTTTGCAAGATTAAGCTGGATGCAAAGACTGCAAAGAACTTCAAGGAGAAGATTGATGATGAATATCATGTTAATATGATTCTGGATAATCTACCTGTGGCAGTGGCCAGACAGAGGTCTGATGGAAATAGCCTTACTACATATGAGCATGGCTTCCGAGTTGGGTTCAAAGCAAGCTACGCAGGGAGTTCAGAAGAGAGGCACTTCATCCACAATCATTTGGCTTTTATTGTGATGTATCACAAGGATGTTGAAACTGATTCTGCACGCATAGTTGGATTTGAAGTTGCACCATTCAGTGTAAAGCATGAGTATGAACAACCATGGGATAATGTCAAAACCCGTTTGACAACTTGTGATCCAAATACCAAGCATACAGTGTCAAATTCTGAGATTCCCCAAGAAGTTGTAGAAGACAAAGAAGTTATATTCACTTATGATGTTACTTTCCGGGAGAGCCCTGTGAAATGGGCATCACGTTGGGATACTTACCTTCTTATGACAGATGATCAGATCCATTGGTTCTCTATCATCAACTCATTGATGATTGTTTTATTTCTTTCCGGAATGGTTGCAATGATCATGATGCGAACATTGTACCGGGATATCTCAAAATACAACCAATTAGAAACACAGGATGAGGCTCAAGAAGAAACTGGATGGAAATTGGTCCATGGAGATGTGTTCAGGGCCCCAACCAATGCAAGCTTACTTTGTGTCTATGTGGGAACTGGAGTTCAGTTTTTTGCCATGACACTAGTGACAATGATATTTGCAGTCCTTGGTTTCCTTTCTCCTTCGAACCGTGGAGGTTTAATGACAGCCATGCTGCTATTATGGGTGTTTATGGGTTTGTTTGCTGGGTATGCATCGTCACGTCTATATAAGATGTTCAAGGGCACAGAATGGAGGAAGAACACGCTGAAGACAGCATTCTTGTTTCCAGGCATTGCCTTTTGCATTTTCTTTATTCTCAATGCACTGATATGGGGAGAAAAATCATCTGGTGCAGTTCCTTTTGGGACTATGTTTGCCTTGGTCCTTTTATGGTTTGGAATTTCTGTGCCATTGGTCTTTGTGGGCAGTTACTTTGGCTACAAGAAACCTGCAATTGAGGATCCAGTGAAGACCAATAAAATCCCCAGGCAGATTCCAGAGCAAGCTTGGTATATGCAGCCCATTTTCTCAATACTAATTGGAGGCATTTTGCCTTTTGGAGCTGTATTCATTGAACTGTTCTTCATATTAACTTCAATATGGCTGCATCAGTTCTACTATATATTTGGGTTCCTGTTCATTGTCTTTGTGATCCTCATTGTGACATGTGCAGAGATCACCATTGTCCTGTGCTACTTTCAATTGTGCAGTGAAGATTACAACTGGTGGTGGAGATCTTATTTGACTGCAGGCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCACCAAGCTGGAGATGACAAAGCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGA___GGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAAGTTTTGGTTTAGGGGAATGGTGCTTGCTCCTTTTATGTTGTTTTAGAGGTTTTTGGGTAACATTACAGGAGACACCAACGTCAATGTGCTGCTGTGGGAGTTAACACTGAATACGTATGTTCATAGATTAATCTCCCGCTACATTCTCTTGTTGAAATATAAACTCAATTCCCATTGTAATCAATTCAATGCTATATTTTATGCAGTTGAGGCCAAAACCACTTGATATTTATTGGTTTTCATGTTCCTTCAACCATGGGATAGGGTATCATACAACATTCCTAGCATCATTCTGATGAAGGATAGGATTCTTTTTATCTAAACAGAGTTTATTTTCCAGTTTCGTGAATGCTAATACGTTTTTCAATGAACAGTTGGTGTTCTTGCGAAGGTTTTGTACAATAAACAGTTGGCATTGTTCTCATTGCCGTGGCTGGCATTCGCAATTTATTCTTTGGGCTGCATCTTAAAACTACTAGTCTTTCTTTTATGTATACATA

Fln Alignment:

Contig10693___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSXXXXXXXXXXXXXXKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID
D5AC25_______________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 4)

Position	A %	G %	T %	Probability
2653	11		88	0.923564
2654	11		88	0.923564
2655	11	88		0.923564
2671	37	62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain