SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10668

Length: 1396 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PST8_PICSI	-	-	66%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Pectinesterase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ARATH1; ARATH12; ARATH13; ARATH16; ARATH17; ARATH20; ARATH21; ARATH22; ARATH24; ARATH25; ARATH26; ARATH27; ARATH28; ARATH32; ARATH33; ARATH34; ARATH35; ARATH36; ARATH38; ARATH39; ARATH4; ARATH40; ARATH41; ARATH42; ARATH44; ARATH45; ARATH46; ARATH47; ARATH

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	translation release factor activity, codon specific	GO:0016149	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	translational termination	GO:0006415	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptide chain release factor 1	IPR004373	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Peptide chain release factor	IPR005139	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily chr3:18249840-18253647 FORWARD LENGTH=598	59%
RefSeq	Arabidopsis thaliana	NP_190491.1	pectinesterase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002317777.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PST8

Fln msg: your sequence is shorter than subject: 376 - 655

Fln protein: KNNAGFKKDEGNNAGLEQEFQKDEGHNAGLDQEFYQHYGLLDRYDMKEFPRWLSPTDRLLLQLSPADLKPDAVVAQDGSGNYVTITDAVKEAPKHLRSRKYIIYVKAGLYLETVKISKRKTNIMFVGDGKGKTVVVSSKNVKDGSTTFSSATYAVSGAGFVARDMTFMNSAGPDKHQAVALRVGADFAAIYRCSIIGYQDTFYVHSLRQFYRECDVFGTVDFIFGNAAVVLQECNIYARQGMPNQMNVITAQGRNHPYQNTGISIHNCIVTATSDLTPWMAFTSTYLGRPWKLFSRTVYMQSFLGDLIHPAGWLEWSGKFALESLYFGEYRNSGPGAFLDGRVTWPGYRVIKTDEEAKEFSVPIFIPASAVGSHT*

Protein Length: 377

Fln nts: AAGAATAACGCTGGTTTCAAGAAAGATGAGGGGAATAACGCTGGTCTGGAGCAGGAATTCCAGAAAGATGAGGGGCATAACGCTGGTCTGGATCAGGAATTCTATCAGCATTATGGGTTGTTGGATCGATATGACATGAAGGAATTCCCAAGGTGGTTATCGCCAACTGATCGTTTACTCCTACAGCTTTCCCCGGCAGACTTAAAACCTGATGCTGTCGTAGCGCAGGATGGCAGTGGCAACTATGTAACAATAACCGACGCTGTCAAGGAGGCACCCAAGCATTTAAGAAGTAGAAAATACATAATTTATGTCAAAGCTGGACTGTACCTTGAAACTGTCAAAATTTCTAAACGAAAAACCAACATAATGTTTGTTGGCGATGGCAAGGGAAAGACTGTTGTTGTCTCCAGCAAAAATGTGAAGGACGGCTCTACTACTTTCAGTTCCGCTACCTATGCTGTATCCGGTGCAGGATTTGTTGCACGTGACATGACCTTTATGAACAGTGCAGGGCCTGACAAGCATCAAGCTGTGGCTCTACGGGTGGGGGCCGATTTTGCGGCGATTTATCGATGCAGTATTATTGGTTACCAAGACACATTTTATGTTCATTCTCTTAGGCAGTTTTACAGAGAATGTGACGTGTTTGGAACAGTAGACTTCATTTTTGGGAACGCAGCCGTGGTTTTACAGGAGTGTAACATCTATGCTCGACAAGGTATGCCCAATCAAATGAACGTAATCACTGCCCAAGGAAGGAATCATCCTTATCAAAATACCGGCATCTCAATACATAATTGTATAGTTACAGCAACAAGTGATCTCACTCCCTGGATGGCATTCACTTCAACATACCTCGGAAGGCCTTGGAAACTTTTCTCTCGAACAGTTTACATGCAATCGTTTCTAGGCGACCTCATTCATCCCGCTGGCTGGTTGGAATGGTCGGGAAAATTTGCATTAGAAAGCTTATACTTTGGGGAATACAGGAATTCTGGGCCTGGTGCATTTCTAGATGGGCGCGTAACTTGGCCTGGTTATAGGGTGATTAAAACCGATGAAGAAGCAAAAGAGTTCAGTGTGCCTATTTTTATCCCTGCTTCTGCAGTGGGATCCCATACATAG___AAGGCCTACACATTTGTTATTTTTTTATTGGCAATAAGGATACCATATTTTAAATCCTTACTGGAATCTAAAATGCTGAAATGCAATACTGCGCGGAGAGGATACCAAAAAATCATGTACTTCCTCTCATCTCACTTTAAAAATGTAATCTATAACTGTTATATTTATAATCTCTCACATATTATCTTTATTCTGTTTCATTTTTACATTCAAAAATTCAAAGTTTAGAAATTCTTGACATGATGTTGCAATCTCATGTCTACGTCAC

Fln Alignment:

Contig10668___DEGHNAGLDQEFYQHYGLLDRYDMKEFPRWLSPTDRLLLQLSPADLKPDAVVAQDGSGNYVTITDAVKEAPKHLRSRKYIIYVKAGLYLETVKISKRKTNIMFVGDGKGKTVVVSSKNVKDGSTTFSSATYAVSGAGFVARDMTFMNSAGPDKHQAVALRVGADFAAIYRCSIIGYQDTFYVHSLRQFYRECDVFGTVDFIFGNAAVVLQECNIYARQGMPNQMNVITAQGRNHPYQNTGISIHNCIVTATSDLTPWMAFTSTYLGRPWKLFSRTVYMQSFLGDLIHPAGWLEWSGKFALESLYFGEYRNSGPGAFLDGRVTWPGYRVIKTDEEAKEFSVPIFIPAS
C0PST8_______________EEMNNADLNQEFYDQYGLVQG-GQHEFPLWLSARDRRLLQLPVAAMQPDAVVAKDGSGKYKSIVDALKDAPSQLTSKRYVIYVKAGVYYENVTVSRKKTNIMIVGDGIQKTVVAAGRNVADGSSTFRSATFAASGTGFIARDMTFLNNAGQDKHQAVALRVGADFSAIYRCSIIGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVLQKCTMFARKPMPNEKITITAQGRKDPNQNTGISIHDCKVTAAIDLVPVKASYRAYLGRPWKLYSRTVYLQTFLDDIIDPAGWLEWYGDFALNTLYYGEYMNSGPGAGLVKRVTWPGYRVFKTADQVYPFTVAQFISGS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
152		66	33		0.997452
154		33		66	0.997452
345	75		25		0.996473
619	16	83			0.994512
621			16	83	0.994512
622	83		16		0.994512
675		25	75		0.996473
774		11		88	0.923564
896	95		4		0.995482
1235	90		2		0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain