SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10634

Length: 2512 nt

UniGene Fasta

>sp_v3.0_unigene10634
GTTTACATGCTGGGACAGAAATTTACACTACTTACTGACGCGATAAAGGGTCATTCACCTCGGTTTGGGTTGGTTGGGCCACCCAGAAGCTCCCTTCTGGTTATTAGACGTCTCAGATAAATATGGCGGATAATGGAGATTTTACTTTCGCCAACGGGAGTTCAGCTGGTAACGGTTTGGCCAAAATCCAGACCCACAAGAAGCAAAATGGCATTTGTCTCGACGACAGTGCTTTGCCTGTGAAGGCGCAGACTCTGAGCGAGCTCCATTTGCTGCAGCAGAAGAAATCTGCGCCTACTTCTCCCATTAAAGAAGCTCAGTGGGGGTTTTCTGCTCAGTTGTCAGAGCAAGAAAGGCAGAACCAGCAGCTGCAGTCTATCAGTGCTTCTTTGGCATCCCTTACCAGGGAAACGGGCCCCAAGGTTGTGAGGGGTGATCCTAGTAAGAAGATCGAGGTTTCGAAGTCCACTAACGAGATTCCAAGCAACGCGCCTTCCGCTAAATTTACTACTAGTGACAGCGCTTTGAAGTTTACACATGTTCTGCACAACCTGTCACCCGCTGAGTTATACGAGCAGGCCAATAAATATGAGAAGGGGTCGTTCATTACATCTACGGGTGCTCTGGCTACGCTTTCGGGAGCCAAGACTGGGCGTTCTCCCAGAGATAAACGTATTGTCAGGGACGAGACCACTGAAGACGAACTGTGGTGGGGCAAGGGATCTCCAAATATCGAGATGGACGAACATACTTTTCTGGTCAACCGAGAGAGGGCTGTGGATTATCTCAATTCTCTGGACAAGGTGTTCGTAAATGATCAATTCCTGAACTGGGATCCTGAGCACCGAATCAAAGTCAGAATTGTCTCAGCGCGAGCATATCACGCTCTCTTTATGCACAACATGTGTATCCGACCCACCCCTGAAGAGCTGGAGGACTTTGGCACTCCGGACTTCACGATATACAATGCTGGCCAATTCCCCTGTAATCGATACACTCACTACATGACATCCTCCACCAGCATAGACCTTAATCTCCGTAGGAGAGAAATGGTTATTTTGGGTACACAATATGCGGGAGAAATGAAGAAGGGTTTGTTCAGCGTGATGCACTATCTTATGCCAAAGAGACAAATTCTTTCCCTCCATTCTGGCTGCAATATGGGAAAGGACGGGGATGTCGCCTTGTTTTTTGGATTATCAGGTACTGGTAAGACCACTCTGTCAACAGACCACAACAGGTTCCTGATCGGCGATGATGAACACTGCTGGAGTGAAAATGGTGTTGCCAATATTGAAGGAGGTTGTTATGCCAAATGCATAGATCTCTCCGGGGAAAAGGAACCAGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGATGAACACACAAGGGAAGTTGATTACGCTGACAAATCAGTAACAGAGAATACGAGGGCCGCCTACCCGATTGAGTATATACCCAACGCAAAGATACCGTGCGTGGGACCTCATCCCAAAAATGTGATATTGCTAGCTTGCGACGCCTTTGGCGTTTTGCCACCAGTCAGCAAACTAACCTTACCCCAGACGATGTATCATTTTATCAGCGGATACACAGCCCTGGTAGCAGGCACAGAGGAGGGCATAAAGGAGCCTCAAGCCACGTTTTCTGCCTGTTTTGGGGCTGCCTTCATTATGCTACATCCTACAAGGTATGCTGCCATGCTCGCTGAGAAAATGCAGAAGCACGGCACAACAGGTTGGCTCGTCAACACTGGCTGGTCAGGCGGCAGCTATGGCGTGGGGCGAAGAATAAAATTGCAGTACACTAGAAAGATCATTGATGCCATTCACGATGGCTCCCTTTTGAAAACCCAGTACTCGGAAACCGATGTATTCGGACTGGAAATCCCAGATGCCATTGATGGCGTTCCCTCTGAGATTCTTCATCCAGAGAACACGTGGCCGGACAAGAAAGCGTACAGAGACACGCTGCTCAAGCTGGCTGGTCTTTTCAGGAACAACTTTGATAAGTTTGTGAATTATAAAATTGGAAAGGACAGCAAGCTGACCGCGGAAATTCAGGCAGCAGGTCCTCAGTTTTAGTTCCATCAAGTAATAATCAGTCATTCCAGTAATGAAGAATAGCAAGGTAACATAATGCAGCAATGGAGAGAATGAATGGATGGGCAGTTTCCTAGGTTTATCATTAGGTAGTAGAGGTGCCTTTGTTCCGATCAGAATATTGAATGAGACATTCCAACAAATGCTCCCAAATTTATGAAGAGTGATATCATAAGTAATGTGTATTTTTCCGTATGTAGGAACACTGTATGTTTGCAAAAAGTGCAATGAAGAATGGTAGTGGTTTTTATATCACATTTTCTGAGAATTTTACCATTGAATTAAAAATTTGGATGGAAGCAGATAGTTGTTATCACGTCATTACTTGGTTTTCATGCCATTATTTGGTTTCCATAATTGCAATGAGATTATAATGTTTCATAATTTAC

Ace file of the UniGene sp_v3.0_unigene10634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxykinase [ATP], putative n=1 Tax=Ricinus communis RepID=B9R6Q4_RICCO	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Phosphoenolpyruvate carboxykinase	-	-	3.006e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	1.258e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.258e-33	%
Sma3	Citrate cycle (TCA cycle)	00020	1.258e-33	%
Sma3	Pyruvate metabolism	00620	1.258e-33	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.258e-33	%
Sma3	Metabolic pathways	01100	1.258e-33	%
Sma3	Biosynthesis of secondary metabolites	01110	1.258e-33	%

Source	Gene names
Sma3	At4g37870; At5g65690; CHLREDRAFT_196612; F6H11.190; GSVIVT00000856001; GSVIVT00011154001; GSVIVT00013328001; GSVIVT00013331001; GSVIVT00013415001; LOC_Os03g15050; LOC_Os10g13700; OSJNBa0004P12.17; OSJNBb0048O22.3; Os03g0255500; Os10g0204400; OsI_10803; Os

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phosphoenolpyruvate carboxykinase activity	GO:0004611	Molecular Function	-
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	purine nucleotide binding	GO:0017076	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37870.1	PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 chr4:17802974-17806332 REVERSE LENGTH=671	78%
RefSeq	Arabidopsis thaliana	NP_195500.1	phosphoenolpyruvate carboxykinase [ATP] [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002302349.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE68

Fln msg: your sequence is longer than subject: 661 - 263

Fln protein: MADNGDFTFANGSSAGNGLAKIQTHKKQNGICLDDSALPVKAQTLSELHLLQQKKSAPTSPIKEAQWGFSAQLSEQERQNQQLQSISASLASLTRETGPKVVRGDPSKKIEVSKSTNEIPSNAPSAKFTTSDSALKFTHVLHNLSPAELYEQANKYEKGSFITSTGALATLSGAKTGRSPRDKRIVRDETTEDELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHALFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLRRREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRFLIGDDEHCWSENGVANIEGGCYAKCIDLSGEKEPDIWNAIKFGTVLENVVFDEHTREVDYADKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLTLPQTMYHFISGYTALVAGTEEGIKEPQATFSACFGAAFIMLHPTRYAAMLAEKMQKHGTTGWLVNTGWSGGSYGVGRRIKLQYTRKIIDAIHDGSLLKTQYSETDVFGLEIPDAIDGVPSEILHPENTWPDKKAYRDTLLKLAGLFRNNFDKFVNYKIGKDSKLTAEIQAAGPQF*

Protein Length: 662

Fln nts: GTTTACATGCTGGGACAGAAATTTACACTACTTACTGACGCGATAAAGGGTCATTCACCTCGGTTTGGGTTGGTTGGGCCACCCAGAAGCTCCCTTCTGGTTATTAGACGTCTCAGATAAAT_-_ATGGCGGATAATGGAGATTTTACTTTCGCCAACGGGAGTTCAGCTGGTAACGGTTTGGCCAAAATCCAGACCCACAAGAAGCAAAATGGCATTTGTCTCGACGACAGTGCTTTGCCTGTGAAGGCGCAGACTCTGAGCGAGCTCCATTTGCTGCAGCAGAAGAAATCTGCGCCTACTTCTCCCATTAAAGAAGCTCAGTGGGGGTTTTCTGCTCAGTTGTCAGAGCAAGAAAGGCAGAACCAGCAGCTGCAGTCTATCAGTGCTTCTTTGGCATCCCTTACCAGGGAAACGGGCCCCAAGGTTGTGAGGGGTGATCCTAGTAAGAAGATCGAGGTTTCGAAGTCCACTAACGAGATTCCAAGCAACGCGCCTTCCGCTAAATTTACTACTAGTGACAGCGCTTTGAAGTTTACACATGTTCTGCACAACCTGTCACCCGCTGAGTTATACGAGCAGGCCAATAAATATGAGAAGGGGTCGTTCATTACATCTACGGGTGCTCTGGCTACGCTTTCGGGAGCCAAGACTGGGCGTTCTCCCAGAGATAAACGTATTGTCAGGGACGAGACCACTGAAGACGAACTGTGGTGGGGCAAGGGATCTCCAAATATCGAGATGGACGAACATACTTTTCTGGTCAACCGAGAGAGGGCTGTGGATTATCTCAATTCTCTGGACAAGGTGTTCGTAAATGATCAATTCCTGAACTGGGATCCTGAGCACCGAATCAAAGTCAGAATTGTCTCAGCGCGAGCATATCACGCTCTCTTTATGCACAACATGTGTATCCGACCCACCCCTGAAGAGCTGGAGGACTTTGGCACTCCGGACTTCACGATATACAATGCTGGCCAATTCCCCTGTAATCGATACACTCACTACATGACATCCTCCACCAGCATAGACCTTAATCTCCGTAGGAGAGAAATGGTTATTTTGGGTACACAATATGCGGGAGAAATGAAGAAGGGTTTGTTCAGCGTGATGCACTATCTTATGCCAAAGAGACAAATTCTTTCCCTCCATTCTGGCTGCAATATGGGAAAGGACGGGGATGTCGCCTTGTTTTTTGGATTATCAGGTACTGGTAAGACCACTCTGTCAACAGACCACAACAGGTTCCTGATCGGCGATGATGAACACTGCTGGAGTGAAAATGGTGTTGCCAATATTGAAGGAGGTTGTTATGCCAAATGCATAGATCTCTCCGGGGAAAAGGAACCAGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGATGAACACACAAGGGAAGTTGATTACGCTGACAAATCAGTAACAGAGAATACGAGGGCCGCCTACCCGATTGAGTATATACCCAACGCAAAGATACCGTGCGTGGGACCTCATCCCAAAAATGTGATATTGCTAGCTTGCGACGCCTTTGGCGTTTTGCCACCAGTCAGCAAACTAACCTTACCCCAGACGATGTATCATTTTATCAGCGGATACACAGCCCTGGTAGCAGGCACAGAGGAGGGCATAAAGGAGCCTCAAGCCACGTTTTCTGCCTGTTTTGGGGCTGCCTTCATTATGCTACATCCTACAAGGTATGCTGCCATGCTCGCTGAGAAAATGCAGAAGCACGGCACAACAGGTTGGCTCGTCAACACTGGCTGGTCAGGCGGCAGCTATGGCGTGGGGCGAAGAATAAAATTGCAGTACACTAGAAAGATCATTGATGCCATTCACGATGGCTCCCTTTTGAAAACCCAGTACTCGGAAACCGATGTATTCGGACTGGAAATCCCAGATGCCATTGATGGCGTTCCCTCTGAGATTCTTCATCCAGAGAACACGTGGCCGGACAAGAAAGCGTACAGAGACACGCTGCTCAAGCTGGCTGGTCTTTTCAGGAACAACTTTGATAAGTTTGTGAATTATAAAATTGGAAAGGACAGCAAGCTGACCGCGGAAATTCAGGCAGCAGGTCCTCAGTTTTAG___TTCCATCAAGTAATAATCAGTCATTCCAGTAATGAAGAATAGCAAGGTAACATAATGCAGCAATGGAGAGAATGAATGGATGGGCAGTTTCCTAGGTTTATCATTAGGTAGTAGAGGTGCCTTTGTTCCGATCAGAATATTGAATGAGACATTCCAACAAATGCTCCCAAATTTATGAAGAGTGATATCATAAGTAATGTGTATTTTTCCGTATGTAGGAACACTGTATGTTTGCAAAAAGTGCAATGAAGAATGGTAGTGGTTTTTATATCACATTTTCTGAGAATTTTACCATTGAATTAAAAATTTGGATGGAAGCAGATAGTTGTTATCACGTCATTACTTGGTTTTCATGCCATTATTTGGTTTCCATAATTGCAATGAGATTATAATGTTTCATAATTTAC

Fln Alignment:

Contig10634___MADNGDFTFANGSSAGNGLAKIQTHKKQNGICLDDSALPVKAQTLSELHLLQQKKSAPTSPIKEAQWGFSAQLSEQERXXXXXXXXXXXXXXXTRETGPKVVRGDPSKKIEVSKSTNEIPSNAPSAKFTTSDSALKFTHVLHNLSPAELYEQANKYEKGSFITSTGALATLSGAKTGRSPRDKRIVRDETTEDELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHALFMHNM
D5AE68_______________MADNGDFTFANERSAGNGLARIQTQKKQNGICHDDSAPPVKAQTLDELHSLQKKKSAPSTPNKGAQLGFAAQLSEEERQKQQMQSISASLASLTRETGPKVLRGDPSKKVEASKPAAEFPSSEPTAKFTTSDSSLKFTHILHNLSAAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVLDETTDDELWWGKGSPNIEMDEHTFLVNRERAVDYLNSLEKVFVNDQFLNWDPEHRLKVRIVSARAYHALFMHNM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
301		33		66	0.997452
462		50	50		1.0
479	16			83	0.994512
617	60			40	1.0
956	33			66	0.997452
957	33			66	0.997452
965		33		66	0.997452
967		66		33	0.997452
968	66			33	0.997452
1047	25		75		0.996473
1048	75			25	0.996473
1050	75			25	0.996473
1176	33		66		0.997452
1177		33	66		0.997452
1178	33		66		0.997452
1179	66			33	0.997452
1270		75		25	0.996473
1390		80		20	0.995493
1530	16			83	0.994512
1531		16	83		0.994512
1532	16	83			0.994512
1534	83			16	0.994512
2113		11		88	0.923564
2220	90		9		0.999872
2242		33	66		1.0
2296		64		35	1.0
2306			66	33	1.0
2367		11		88	0.923564
2378			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain