SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10622

Length: 1891 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10622

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAP multi-domain protein	-	-	1.0e-07	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	Gene names
Sma3	AT4g17940; AT4g32340; At1g80130; At4g17940; At4g32340; At5g20190; F10M6.30; F18B13.21; F8B4.40; GSVIVT00000340001; GSVIVT00015736001; GSVIVT00016915001; GSVIVT00020351001; LOC_Os10g42610; OSIGBa0157K09-H0214G12.11; OSJNBa0004N05.2; OSJNBa0027L23.7; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	8.0e-23	61%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	1.0e-22	61%
RefSeq	Populus trichocarpa	XP_002326532.1	predicted protein [Populus trichocarpa]	3.0e-23	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 142 - 387

Fln protein: ELCTASFRPVYCIPLDSISSTDLIYQRHYLQIRYCYIKILNIVGFVCI*VQRDVERAEEYYGRAILASPSDGDILSLYANLIWDVHKDVPRAKYYYEQAVEAAPDDCNVVASYAHFLWDAEDDEEDPASPIHCGTATTVDT*

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTCAGACTCTCGGCCGCCCAGCTCCTGAATCATCGGCAGAAATCTGGTCTTAATTGCTCTATTAGCCTTTCATTTCAAGATGTTACTCCGTAGTTCATCCACTCCTGCGCTCAATTCTCTCGTCGGGATTCAACCAAAATCAGAATGGAATTCGCGTGGATCTGTTCGGTTTCCCCACTTTCTTGTTGCTCTCAATAGCGATGGCAAGTGGGATCATCATGATTTACAGCCCTTCTCCGGAAGGACCCTGTCTGAAGCTGATTTACATAATCTCTTATTGTCTAATGGCAGCCCAAGCAGGCAGGGGTTAAGGATGGGCTCCGGTTCTTTGGAGCTCTGTAGAAAGCTCTCTACAGAAAGTTTTTTGAGTAGTGACTTATGGGACGAGGCCCTGGAAGAGGAACTTGAGAATTCTGATACCGAAATTTCAATTGGCTTTCAGAGCGCTGGAGACCCACATGAAGAGTCTCCAGAAAAAATCACGGCAGCCGTTGGAATCCATGTAGGTGAGGGACGATCTGTCTATGGAAGGAGGATATGTGAAGGGAGTGGAGTAGCTTTGGTGTGCGACAGGGCTGTTGTTGGTTCTAAAACTGAGACGGGTTGTGTTAATGGAGGAATTGGGGGTGAAGATGGAGGTGGGTTCTCTGGTGGGACAGGGTATGGAGGTGGTGTGACAGGGTATGGAAGGAGAGGAGGTGGCTTTGGATCAGATTCCAATAACATGGATGCGTACTACAAGAAAATGCTGCAGGCAGATCCTGGCAACCCACTTTTATTGACAAATTACGGGAGGTTCCTGCAGGAGGTGAGTACTGAGGAAGCTGAGCTTTGTTTTAATTTAATACCCTTGGGCTGCTACAAAGTTTTTCAAAGACACACTGAATTGTAATATATCAAGTTCATTAGGAGCTCTGTACTGCCTCTTTTAGGCCCGTATATTGCATCCCTCTTGATAGTATATCATCTACCGATCTCATATATCAAAGACATTATTTACAGATTAGGTATTGTTATATTAAAATTCTCAATATTGTTGGTTTTGTGTGTATTTAGGTTCAGCGTGATGTGGAAAGAGCTGAGGAATATTATGGGAGGGCCATCCTAGCCAGTCCCAGTGATGGAGATATCCTCTCTCTTTATGCCAATCTGATATGGGATGTTCACAAAGATGTACCTCGTGCAAAATACTACTATGAGCAAGCTGTAGAGGCTGCTCCGGATGACTGCAATGTTGTTGCATCCTATGCTCATTTCCTATGGGATGCAGAAGATGATGAAGAGGATCCGGCATCCCCTATCCATTGTGGAACTGCGACTACTGTAGATACATGA___TCGCATCGGAGGGTTAGTGGCAGTTTGATTTCTATGAACAGAGTCATCAAACTTGCCAGACCACTGTTATCTTGGCATTATCAGTACTGCAGCTCAGATTTGGTAGTTACAAGCGTAGATGATATTTAGCATGGTGCATTTGAAGAAAATATTGTAAGTTGGAGATTCGTGTATATTGTATCGTTCTGCCGTGCAAAGCTTTAAGACATATCCTTTCTTGTAATCTCTTATGAACACATGGACAGCCCTGTTTAGACCTCAAGGTGGGGTAAACGAATGAAAGCCAGGGTGACGGGGCCTGGATGAAATCAAGTGGCCTGCTGAAGAAGAATGGGCTCATCTGTTGCTACAAATGCTGTCGTCATATCCATTGAAATGGATCCTGGATGCCAATTCAGTGGCATGGAGATGATCTTACGCCAGCTGATGCCAGAACCTGTTGCAGCTGGTGCAGACCTTTCCAGCCATGTTTGTATAACAAGCATGGAGTTGTATGGACTTTGCAGCACCAATAAAAGTTTGAGGTTAT

Fln Alignment:

Contig10622___DSISSTDLIYQRHYLQIRYCYIKILNIVGFVCI*VQRDVERAEEYYGRAILASPSDGDILSLYANLIWDVHKDVPRAKYYYEQAVEAAPDDCNVVASYAHFLWDA
B8LR76_______________NSKSSTDMYYQSMLEANPGNPLLLSNYAKFLHE-VQHDMAKAEEYYGRAILASPGDAEVLSLYAKFTWETQNDGARAESYFDRAVKAAPDDCYVLSSYAHFLWNS

SNPs (tot: 4)

Position	A %	G %	T %	Probability
1524		75	25	0.996473
1525		25	75	0.996473
1526		25	75	0.996473
1657	14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain