SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10615

Length: 2544 nt

UniGene Fasta

>sp_v3.0_unigene10615
CGTCGTGACCTTGGCTGTCACTCAAGTTGTGAAATCCTGTGATGTTTGTACATCATCAATCTGTTTGTATAGACATCGACCGTTTCTGCCATTTTTGGCGAAAGGCGAGCTCCACCATATTTTGCGAGAAAACATTGTAAATGTTCAGATCGGTTGCAGAACGATCGGTTACAGCCGGCAAATTTAAGCCATTGTTTGGAAGAAAAATGCAGGGGAAATGACAAATCTAAGCTCCGCCTGACCTCAGAAGCCAATTCGTGCTTTTTAAGATATTGAAAGCTTCAAAAAAATGGGCGGCTGCAATGTCAAATAAATATCTGAAGTAAAATTGGCAATTTGAGTTTATAGAGGATTGGATTTTGGTATTTGGTGCAATGGATTTATGGTTTCTTAGGCTGATAAGGGTTTGCAAAGAACTCAGAACATATTGGGAGGATTTATTATGTGATCAAAATTAAATTAGAATTGAAGTAGTTATGGATATGGCTAGGTCCAGGCGCCCCCTTCCGCCCGTCGCGTTTGAAGATGGAAAGGACTCTGATAGTCACCTTTTGGAGAAGAAGCCTGGCTTTAATGCAGCTAAATTGCTGTGCATTTCTCTTGTGTGCTTGCTTGTGTTACCGGCTCTTGTTTCTTTGAGGTATCACGCCTTTTCACAGGATTCAGTGCCTGGACAGAGTCAGATCTCACAGTTGCAGCAATATCCAGGTCGCATTGTCGAGGAACAGGACATGGCTAGAACTCGTATTGGAGATGACAATTTGTTAGCAGATCAAACAGAAAATAACCAGTTGCCAGATGTCGACAGACATACAAATGGAAGAGATTTGGACAAGGAAAATGAAAATAGCTCATCAATAACCCAAAGGATAGGAGGTAGTTCTCTTGAGAATGCAGATAATGGGGATTCATTACTAGATGGCTTACTTGCTGAAGGCATTTCCAGACGCAGTTGTAGGAGTAGGCATGAAGTATACCGCTATAGAAAAGTGTCCAAATATAAGCCATCAGCTTATTTGGTTGAAAGGCTTCGGAAATATGAAGCTCTGCACAGAAGATGTGGCCCAAGCACTGAAATATTCAATAAAAGTTTAGATCAACTAAAGGCTGGGAAAATAACTGGAGATGGAGATTGTCAATATATTGTATGGACAACTTACAGTGGATTAGGTAACAGGATAGTGACAATAGCTGCTACATTTCTTTATGCTCTCTTAACTAACAGGGTACTCCTGATTGACAGAGGTCATGACATGAGTGATCTATTTTGTGAGCCATTTCCCAACACTTCTTGGTTTCTACCAGCGGATTTCCCAGTGGCATTGTTACAACATTGCAATGAAACATCAACTCAGAGATATGGGAATCTGCTTAACAACAGCATTATCCAGGTGTACGAGAATGGCACTCTTAGCAGTTTGCCACATTACATTTATGTTCATCTTACCCACAACTATAATTTCCATGATAAATTATTCTTTTGTGAAAGAGAGCAGCATTTCCTTGAGCAAATACCGTGGTTGTTCTTAAAATCCAATAACTACTTTGTCCCATCTCTCTACTTGTTGCCTACATTTAACAAAGAGTTGCATCATTTGTTTCCTGATAAAGATTCTGTTTTCCATCATTTGGGACGTTACCTATTCCACCCTTCCAATCGAGTTTGGGGTTTGATTACCCGTTTTTATCAATCTTATATGGCCTATGCAAAGCAAAGAATAGGCATACAGATCAGGACATTTGATCCTGGTTTTTTCTCACATATATCAGAGCAGGTTGTGGCTTGCAGTCTGAAAAATGGAGTATTACCCAATGTATTGATTAATGATGAGGCGCTGGAAGATACTTATCTCAATGGGGACATGAAAAAGCCTTTTGTGGTATTAGTCACCTCTCTACATTCTGGTTACTATGAAAGAATTAAAAGCATGTATTGGGAGCACCCGACACTGGATGGACAGCTTGTAAGTGTCTACCAGCCTAGCCATGAAGAATGGCAGCAGACTGAGAAGCAATCTCACAATATGAAAGCCTGGGCAGAAATGTATCTTCTATCTCTATGTGATGTACTTATAACTAGCCCATGGTCAACATTTGGGTATGTAGCCCAAGGTCTTGGAGGCATAAAACCTTGGATTTTGTTTAAACCTGAGAATGACACTGCTGCAGATCCACCATGTCGTAAAGTCATGTCAATGGAGCCATGCTTTCATGCACCTCCATTTTATGATTGCCAAGCTAAAAAAGGTATAGACACTGGAAAAGTCTTTCCGTACGTGAAGCACTGTGAAGATGTGCCTTGGGGCATTAAACTAGTAGAGAATGATGAACTGTAAGTTATACCTCTTTTGGTGTCTGAAGTTATTCTTTCTAATAACGTCATTTATTTTGCATATAATATCCAGGCATCGAGGAATCTGAAAAATGAATATGGTCTTTTGGAGACTATGCCTGATTGATCTGATGCATAAATATGTTTTTTTCCTTTTGTTGTTACTGCATGTAATACAGTATTATGTTCCCTCCTGCATAAACATGTCTACA

Ace file of the UniGene sp_v3.0_unigene10615

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase family-37 n=2 Tax=Populus RepID=B9HI99_POPTR	-	-	0.0	58%
FL-Next	sp=Galactoside 2-alpha-L-fucosyltransferase; Pisum sativum (Garden pea).	-	-	0.0	55%
Sma3	Galactoside 2-alpha-L-fucosyltransferase, putative	-	-	3.786e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	3.016e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		3.016e-18	%
Sma3	N-Glycan biosynthesis	00510		3.016e-18	%
Sma3	Mucin type O-Glycan biosynthesis	00512		3.016e-18	%
Sma3	Various types of N-glycan biosynthesis	00513		3.016e-18	%
Sma3	Other types of O-glycan biosynthesis	00514		3.016e-18	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		3.016e-18	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		3.016e-18	%
Sma3	Lipopolysaccharide biosynthesis	00540		3.016e-18	%
Sma3	Peptidoglycan biosynthesis	00550		3.016e-18	%
Sma3	Glycerolipid metabolism	00561		3.016e-18	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		3.016e-18	%
Sma3	Sphingolipid metabolism	00600		3.016e-18	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		3.016e-18	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		3.016e-18	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		3.016e-18	%
Sma3	Carotenoid biosynthesis	00906		3.016e-18	%
Sma3	Zeatin biosynthesis	00908		3.016e-18	%
Sma3	Flavonoid biosynthesis	00941		3.016e-18	%
Sma3	Anthocyanin biosynthesis	00942		3.016e-18	%
Sma3	Flavone and flavonol biosynthesis	00944		3.016e-18	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		3.016e-18	%
Sma3	Betalain biosynthesis	00965		3.016e-18	%
Sma3	Biosynthesis of type II polyketide products	01057		3.016e-18	%
Sma3	Metabolic pathways	01100		3.016e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		3.016e-18	%
Sma3	Galactoside 2-alpha-L-fucosyltransferase.	EC:2.4.1.69	-	3.876e-39	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	3.876e-39	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603	3.876e-39	%
Sma3	Metabolic pathways	01100	3.876e-39	%

Source	Gene names
Sma3	At1g14070; At1g14080; At1g14100; At1g14110; At1g74420; At2g03210; At2g03220; At2g15350; At2g15370; At2g15390; B1045B05.16; F16A14.19; F16A14.28; F26H6.11; F26H6.13; F7A19.15; F7A19.16; F7A19.18; F7A19.19; FT1; FUT1; FUT10; FUT2; FUT3; FUT4; FUT5; FUT6; FU

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	galactoside 2-alpha-L-fucosyltransferase activity	GO:0008107	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	cell wall biogenesis	GO:0042546	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Xyloglucan fucosyltransferase	IPR004938	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03220.1	FT1, ATFUT1, ATFT1, MUR2 fucosyltransferase 1 chr2:970401-972353 REVERSE LENGTH=558	56%
RefSeq	Arabidopsis thaliana	NP_178421.1	xyloglucan fucosyltransferase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002312258.1	glycosyltransferase family-37 [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M5Q1

Fln msg: your sequence is longer than subject: 620 - 565

Fln protein: MDMARSRRPLPPVAFEDGKDSDSHLLEKKPGFNAAKLLCISLVCLLVLPALVSLRYHAFSQDSVPGQSQISQLQQYPGRIVEEQDMARTRIGDDNLLADQTENNQLPDVDRHTNGRDLDKENENSSSITQRIGGSSLENADNGDSLLDGLLAEGISRRSCRSRHEVYRYRKVSKYKPSAYLVERLRKYEALHRRCGPSTEIFNKSLDQLKAGKITGDGDCQYIVWTTYSGLGNRIVTIAATFLYALLTNRVLLIDRGHDMSDLFCEPFPNTSWFLPADFPVALLQHCNETSTQRYGNLLNNSIIQVYENGTLSSLPHYIYVHLTHNYNFHDKLFFCEREQHFLEQIPWLFLKSNNYFVPSLYLLPTFNKELHHLFPDKDSVFHHLGRYLFHPSNRVWGLITRFYQSYMAYAKQRIGIQIRTFDPGFFSHISEQVVACSLKNGVLPNVLINDEALEDTYLNGDMKKPFVVLVTSLHSGYYERIKSMYWEHPTLDGQLVSVYQPSHEEWQQTEKQSHNMKAWAEMYLLSLCDVLITSPWSTFGYVAQGLGGIKPWILFKPENDTAADPPCRKVMSMEPCFHAPPFYDCQAKKGIDTGKVFPYVKHCEDVPWGIKLVENDEL*

Protein Length: 621

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTGTGAAATCCTGTGATGTTTGTACATCATCAATCTGTTTGTATAGACATCGACCGTTTCTGCCATTTTTGGCGAAAGGCGAGCTCCACCATATTTTGCGAGAAAACATTGTAAATGTTCAGATCGGTTGCAGAACGATCGGTTACAGCCGGCAAATTTAAGCCATTGTTTGGAAGAAAAATGCAGGGGAAATGACAAATCTAAGCTCCGCCTGACCTCAGAAGCCAATTCGTGCTTTTTAAGATATTGAAAGCTTCAAAAAAATGGGCGGCTGCAATGTCAAATAAATATCTGAAGTAAAATTGGCAATTTGAGTTTATAGAGGATTGGATTTTGGTATTTGGTGCAATGGATTTATGGTTTCTTAGGCTGATAAGGGTTTGCAAAGAACTCAGAACATATTGGGAGGATTTATTATGTGATCAAAATTAAATTAGAATTGAAGTAGTT_-_ATGGATATGGCTAGGTCCAGGCGCCCCCTTCCGCCCGTCGCGTTTGAAGATGGAAAGGACTCTGATAGTCACCTTTTGGAGAAGAAGCCTGGCTTTAATGCAGCTAAATTGCTGTGCATTTCTCTTGTGTGCTTGCTTGTGTTACCGGCTCTTGTTTCTTTGAGGTATCACGCCTTTTCACAGGATTCAGTGCCTGGACAGAGTCAGATCTCACAGTTGCAGCAATATCCAGGTCGCATTGTCGAGGAACAGGACATGGCTAGAACTCGTATTGGAGATGACAATTTGTTAGCAGATCAAACAGAAAATAACCAGTTGCCAGATGTCGACAGACATACAAATGGAAGAGATTTGGACAAGGAAAATGAAAATAGCTCATCAATAACCCAAAGGATAGGAGGTAGTTCTCTTGAGAATGCAGATAATGGGGATTCATTACTAGATGGCTTACTTGCTGAAGGCATTTCCAGACGCAGTTGTAGGAGTAGGCATGAAGTATACCGCTATAGAAAAGTGTCCAAATATAAGCCATCAGCTTATTTGGTTGAAAGGCTTCGGAAATATGAAGCTCTGCACAGAAGATGTGGCCCAAGCACTGAAATATTCAATAAAAGTTTAGATCAACTAAAGGCTGGGAAAATAACTGGAGATGGAGATTGTCAATATATTGTATGGACAACTTACAGTGGATTAGGTAACAGGATAGTGACAATAGCTGCTACATTTCTTTATGCTCTCTTAACTAACAGGGTACTCCTGATTGACAGAGGTCATGACATGAGTGATCTATTTTGTGAGCCATTTCCCAACACTTCTTGGTTTCTACCAGCGGATTTCCCAGTGGCATTGTTACAACATTGCAATGAAACATCAACTCAGAGATATGGGAATCTGCTTAACAACAGCATTATCCAGGTGTACGAGAATGGCACTCTTAGCAGTTTGCCACATTACATTTATGTTCATCTTACCCACAACTATAATTTCCATGATAAATTATTCTTTTGTGAAAGAGAGCAGCATTTCCTTGAGCAAATACCGTGGTTGTTCTTAAAATCCAATAACTACTTTGTCCCATCTCTCTACTTGTTGCCTACATTTAACAAAGAGTTGCATCATTTGTTTCCTGATAAAGATTCTGTTTTCCATCATTTGGGACGTTACCTATTCCACCCTTCCAATCGAGTTTGGGGTTTGATTACCCGTTTTTATCAATCTTATATGGCCTATGCAAAGCAAAGAATAGGCATACAGATCAGGACATTTGATCCTGGTTTTTTCTCACATATATCAGAGCAGGTTGTGGCTTGCAGTCTGAAAAATGGAGTATTACCCAATGTATTGATTAATGATGAGGCGCTGGAAGATACTTATCTCAATGGGGACATGAAAAAGCCTTTTGTGGTATTAGTCACCTCTCTACATTCTGGTTACTATGAAAGAATTAAAAGCATGTATTGGGAGCACCCGACACTGGATGGACAGCTTGTAAGTGTCTACCAGCCTAGCCATGAAGAATGGCAGCAGACTGAGAAGCAATCTCACAATATGAAAGCCTGGGCAGAAATGTATCTTCTATCTCTATGTGATGTACTTATAACTAGCCCATGGTCAACATTTGGGTATGTAGCCCAAGGTCTTGGAGGCATAAAACCTTGGATTTTGTTTAAACCTGAGAATGACACTGCTGCAGATCCACCATGTCGTAAAGTCATGTCAATGGAGCCATGCTTTCATGCACCTCCATTTTATGATTGCCAAGCTAAAAAAGGTATAGACACTGGAAAAGTCTTTCCGTACGTGAAGCACTGTGAAGATGTGCCTTGGGGCATTAAACTAGTAGAGAATGATGAACTGTAA___GTTATACCTCTTTTGGTGTCTGAAGTTATTCTTTCTAATAACGTCATTTATTTTGCATATAATATCCAGGCATCGAGGAATCTGAAAAATGAATATGGTCTTTTGGAGACTATGCCTGATTGATCTGATGCATAAATATGTTTTTTTCCTTTTGTTGTTACTGCATGTAATACAGTATTATGTTCCCTCCTGCATAAACATGTCTACA

Fln Alignment:

Contig10615___ITQRIGGSSLENADN-GDSLLDGLLAEGISRRSCRSRHEVYRYRKVSKYKPSAYLVERLRKYEALHRRCGPSTEIFNKSLDQLKAGKITGDGDCQYIVWTTYSGLGNRIVTIAATFLYALLTNRVLLIDRGHDMSDLFCEPFPNTSWFLPADFPV-ALLQHCNETSTQRYGNLLNNSIIQVYENGTLSSLPHYIYVHLTHNYNFHDKLFFCEREQHFLEQIPWLFLKSNNYFVPSLYLLPTFNKELHHLFPDKDSVFHHLGRYLFHPSNRVWGLITRFYQSYMAYAKQRIGIQIRTFD--PGFFSHISEQVVACSLKNGVLPNVLINDEALEDTYLNGDMKKPFVVLVTSLHSGYYERIKSMYWEHPTLDGQLVSVYQPSHEEWQQTEKQSHNMKAWAEMYLLSLCDVLITSPWSTFGYVAQGLGGIKPWILFKPENDTAADPPCRKVMSMEPCFHAPPFYDCQAKKGIDTGKVFPYVKHCEDVPWGIKLVEN
Q9M5Q1_______________LNQGLGSDDFDSVELLNDKLLGGLLADGFDEKSCLSRYQSAIFGKGLSGKPSSYLISRLRKYEARHKQCGPYTESYNKTVKELGSGQFSESVDCKYVVWISFSGLGNRILTLVSAFLYALLTDRVLLVDPGVDMTDLFCEPFPDASWFVPPDFPLNSHLNNFNQESNQCHGKILKTKSI------TNSTVPSFVYLHLAHDYDDHDKLFFCDEEQLFLQNVPLLIMKTDNYFIPSLFLMPSFEQELNDLFPKKEKVFHFLGRYLLHPTNNVWGLVVRYYDAYLAKVDERIGIQIRVFDTDPGPFQHVLDQVLACTLKESILPDV--NRE--QNINSSSGTPKSKAVLITSLSSGYFEKVRDMYWEFPTETGEVVGIYQPSHEGYQQTQKQFHNQKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPNPPCQRAMSMEPCFHAPPFYDCKAKRGTDTGALVPHVRHCEDMSWGLKLVDN

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
792			25	75	0.996473
959		14	85		0.993533
961			85	14	0.993533
965			85	14	0.993533
966	14	85			0.993533
978		66	33		1.0
989	66	33			1.0
1379		88		11	0.923564
1382		88		11	0.923564
1397		75		25	1.0
1438			12	87	0.992554
1439			12	87	0.992554
1494		83		16	0.994512
1544		83		16	0.994512
1545	16			83	0.994512
1546		20		80	0.995493
1547	20			80	0.995493
1548			80	20	0.995493
1977		87		12	0.999964
2181		6		93	0.999264
2247	82		11		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain