SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10586

Length: 1294 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10586

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAL31925.1\|AF419593_1 At2g39210/T16B24.15 [Arabidopsis thaliana] gb\|AAC28987.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AEC09646.1\| major facilitator protein [Arabidopsis thaliana]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Nodulin family protein, putative, expressed	-	-	2.442e-16	-

Source	Gene names
Sma3	At1g18940; At1g74780; At2g28120; At2g28120/F24D13.9; At2g34350; At2g39210; GSVIVT00000065001; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018123001; GSVIVT00018125001; GSVIVT00018126001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Uncharacterised domain NUC173	IPR012978	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39210.1	Major facilitator superfamily protein chr2:16366287-16368231 REVERSE LENGTH=601	55%
RefSeq	Arabidopsis thaliana	NP_181454.1	major facilitator protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 322 - 626

Fln protein: QFTDAFSDRGKSMIELESCCKDINSVSVDISVLAIESKSASNEVPCAHDEKKLKGKWPQRGEDHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSPLSISTFVSLLSIWNFLGRVGAGFISEILVHKYSIPRPFLLSLALLVASIGHLLIASALPGSLYMASILIGMCFGAQWPLIFSIISELFGLRHFAILYNIGASASPLGAYLFSVRVAGYFYDQRAKLEVPSSDVPAASNEMCVGKSCFGITFFIMAAISIVGSAIAAVLVYRTRQFYKQDIYGKFNKEADDSSLSNKKDLKYWSKRMSRHKLIDV*

Protein Length: 323

Fln nts: CAGTTCACTGATGCATTCTCAGATCGAGGGAAGTCTATGATTGAACTGGAAAGCTGCTGCAAGGATATCAATTCTGTCTCTGTCGACATATCAGTGCTTGCAATAGAATCCAAATCTGCTAGCAATGAAGTACCATGCGCTCACGATGAGAAGAAATTGAAAGGAAAATGGCCTCAAAGAGGTGAAGACCATACAATTCCTCAAGCATTAATGAGCTTAGACTTGTGGATACTTTTCCTGGCAACAACATGTGGATTGGGATCAACAATTACAGCAATCGACAACATGGGACAGATTGGAAAATCCTTGCGATACTCTCCTCTGAGTATAAGCACTTTTGTTTCACTTCTGAGCATCTGGAACTTTTTAGGCCGAGTTGGGGCAGGCTTCATCTCTGAAATACTTGTGCACAAGTATTCAATTCCTAGGCCCTTTTTGCTGAGCCTAGCCCTGTTAGTTGCCTCCATAGGTCATCTCCTCATTGCTTCTGCACTCCCTGGATCTCTTTACATGGCCTCCATTCTCATCGGCATGTGTTTCGGTGCACAGTGGCCTCTCATATTCTCTATCATCTCCGAACTATTTGGGCTTCGCCATTTTGCAATTTTGTATAATATTGGAGCAAGTGCCAGCCCTCTAGGGGCTTACTTATTCTCTGTTAGGGTAGCAGGATACTTCTACGATCAGCGAGCAAAACTTGAAGTGCCATCTAGTGATGTTCCAGCTGCATCAAATGAGATGTGTGTTGGGAAGTCATGCTTTGGGATAACGTTTTTCATAATGGCAGCAATTAGCATCGTTGGTTCGGCCATCGCAGCTGTTCTAGTGTACAGGACCAGGCAATTCTACAAGCAAGATATTTATGGGAAATTCAATAAAGAAGCCGATGACTCGTCCCTGTCCAATAAAAAAGACCTCAAGTATTGGTCAAAAAGGATGAGCCGTCATAAATTGATTGATGTGTGA___CTTCCAATTCGGCATTTATTCTTATGCTCTACCGACAAGTGTGATGAGGGAGCAAAGGCAGTCTTGTAATTTCTTTGAATGATTAAAAGCAAGAGAGTTTTATGTATTGGTTGTTGTTGCCTATGTGTACATAAAACAAGCGTCCCTTTCATCTATGCAGAGCTGCTACAACAGCTACGTTACATGATAAGGAAACAAAAACCATAGGGCATTAATTGAAGCACAGCTGTATATGCCCACATTTAGTCTTATATTTTTGTTTACTGACAAGTTGTGATGAGGGAGTAAAGGCAAGCGTGTAATTTTTTTGAATGATTAAATGCAATAT

Fln Alignment:

Contig10586___SVSVDISVLAIESKSASNEVPCAHDEKKLKGKWPQRGEDHTIPQALMSLDLWILFLATTCGLGSTITAIDNMGQIGKSLRYSPLSISTFVSLLSIWNFLGRVGAGFISEILVHKYSIPRPFLLSLALLVASIGHLLIASALPGSLYMASILIGMCFGAQWPLIFSIISELFGLRHFAILYNIGASASPLGAYLFSVRVAGYFYDQRAKLE--------------VPSSDVPAASNEMCVGKSCFGITFFXXXXXXXXXXXXXXXLVYRTRQFY
B8LRH5_______________SESVTTEPRPSQSESVENQIVC--------NSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGF--VDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNN--CVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
430	33		66		0.997452
935	85	14			0.993533
1015	88		11		0.923564
1128		33	66		1.0
1161	80	20			0.995493
1168	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain