SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10546

Length: 2357 nt

UniGene Fasta

>sp_v3.0_unigene10546
CTTTGCTTTTGCCTCTGCACATTTTACCTCTCAGACTCATTCCTCTGGGCCATCATCAGAACTTCGTCCCTCTTCCTGTACTGTACGTCATGGGAGAATGATGCTCTTTGCTGCACAAAGATCTTCTTGATCCCTTCCTCTTAATGGCGCTGGCGGTGGACTTTACTGATCTTTACCATTAAAATACACGACCCTGCTTTTCAATGGCGGTAGACAATATGGATGGATTGGGACTGGAATAGCCCTTACGGTTCAGAGAGTTTCGCTTCGCTTGGCAGCTCTGTTGCACTTGTCTTCGAGCCAACACTTCAACTTCTCTTCCGGTTACCAGTTATTTAAATAGGCACATGAATAATGGACGCGAGAGGTCCAAATCCGTTCCCACAATGCGCTTCCCTATAATTTCGCCCAAATCTTTAACGATTTGCTTTTGAATTTGCGGGAGCTCCCTCTTGTTTAATTTTCAGGTTTTCGCGTTACAGCAGGCGCAGTGGATTATCTGTAGCATTGATTATGGATTCAACAGGTTGGAGGATCGATTCCCGCAATGCATTATTGTTTCTATGTATGTTAGCGATAATTCACGCGGGCGTTACTGTGAATGCGGCGAAGCCACCTGTAACAAACGCGTACGCGACAATGATGTACATGGGGACGCCAAGAGACTACGAGTTTTATGTGGCTGTGCGTGTAATGCTTCGGTCCCTCCGCCGTCTCAATGTGGACGCAGACCTTGTTGTCATCGCTTCCAGAGACGTTCCACAACCATGGATCAACAAACTGCATGGGGATGGTGTCAAGGTAGTCATGGTCGACAACATGGAGAATCCATACAGACACCAATCGAATTTCGACAAACGCTTTACTCTCACCCTCAACAAATTATACGCATGGAATCTCGTCGAGTATGAGCGTGTTGTCATGCTGGATGCAGACAATCTATTTCTGCAAAAAACCGATGAGCTTTTCCAATGTGGGCAGTTCTGTGCTGTCTTCATTAATCCCTGCATCTTCCACACGGGACTCTTCGTTTTACAGCCATCAGAGGTTGTGTTCAAGGATATGTTGAAGCAGCTTGCCAGTGGCCGAGAAAACGAAGATGGTGCAGACCAAGGATTTCTCACAGGATATTTTGATGATATGTTAGGCAAACCTATGTTCCGTCCTAAATTGAATGGATCCAGACAAAATGGGTTATTTCGTCTGCCATTGGGATACCAAATGGACGCATCATACTACTATTTAAAGTTGAGATGGAGCGTACCGTGTGGACCCAACAGTGTGATAACTTACCCAGGTGCTCCATGGTTTAAACCATGGTACTGGTGGTCATGGCCAGTATTGCCACTGGGCATTTCGTGGCACAAACAACGATTAGATACAATAGGGTACGATGAAGAACTACCAGTGGTTGTGATAGAGGCAATTATATACCTGATGATAATGGTCATTGCCAAATTTAGGGGCTTCTTTCTCAACTCAAAGGGTTACTTCTACAGATCCTTTGACAGGGAGCACTGTCGGCATCCTCTGTTTGTGAGAACAATAGGGATATCATGTTTATTGGGAGGTTATCTGATTCCTTGCTTGTTGATACCCAAAACAACACACCCATTATGGGGGTGGGGGCTCTATTTGCTCGGTTCAATGTCTCTTGTATATTCTACCATTAAAGCATATCCAATTCCAGTTTTGGCGGCGTTTACTCTGTGGATGGGCATATTGGGCGTGCTTCTAGTGATGGCGTGTCCTCTATATCCTGATGGGGTGGTGAGAGCGATGTCGGTGTTTATTTATGCAGTAGTGGCAATCCCAATAGCGTGGTCGGCCATTATCAGAGTGGCGAGGTCTCTTGATTACACCATTGACAGAGAATCACAGTCCCAACTATCTGATCAGCTCATAAAAGCGTGTTGATGAAGTTTGGTTTCATCTCCCAACAACATTCCTTCAGCTTTTTATGACCTCCCCTGTAACTTCATCCTCCCCACACAACGTTGCTTCAGCTTCTATGGTTCACCTTTTTATTTACATGTTACTGCATCCATCCATGGTCGACAGTGACAGAGATTGTTCGGACTGTTTACGAAGTTTTCATTTTTGACATGAACATGGTTAATCTCGACTGAGCTGACCCATACTATCGGAGTTAACCCATTAGAAGTTGTATGCACTGATAGTTCAACAGGTTCAAGTTCAGTTTTCTTGCAATCTTAGATATTGTATTGACTGATCTCTCAAACGGTCAAGGTCAGTTTTCCTGGAATTATAGAAGTGGTATTGACTTATCTCTCAAAACGTTCATGTTCAGTTTTCTTGTGATCTGGTAGTAGGAACGAAAGTTCTACGCTCTGTTC

Ace file of the UniGene sp_v3.0_unigene10546

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	0.0	61%
FL-Next	sp=Putative glucuronosyltransferase PGSIP8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%

Source	Gene names
Sma3	AT4g16600; At2g35710; At2g35715; GSVIVT00009599001; LOC_Os10g40640; OSIGBa0143N19.10; OSJNBa0010H02.17; OSJNBb0014I11.6; Os04g0553800; Os10g0555100; OsGGT; OsI_16920; OsI_34602; OsJ_15720; OsJ_32415; PHYPADRAFT_112975; PHYPADRAFT_119507; PHYPADRAFT_150396

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35710.1	Nucleotide-diphospho-sugar transferases superfamily protein chr2:15010925-15014070 REVERSE LENGTH=497	60%
RefSeq	Arabidopsis thaliana	NP_565817.2	nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002303354.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8VZP6

Fln msg: your sequence is shorter than subject: 468 - 497

Fln protein: MDSTGWRIDSRNALLFLCMLAIIHAGVTVNAAKPPVTNAYATMMYMGTPRDYEFYVAVRVMLRSLRRLNVDADLVVIASRDVPQPWINKLHGDGVKVVMVDNMENPYRHQSNFDKRFTLTLNKLYAWNLVEYERVVMLDADNLFLQKTDELFQCGQFCAVFINPCIFHTGLFVLQPSEVVFKDMLKQLASGRENEDGADQGFLTGYFDDMLGKPMFRPKLNGSRQNGLFRLPLGYQMDASYYYLKLRWSVPCGPNSVITYPGAPWFKPWYWWSWPVLPLGISWHKQRLDTIGYDEELPVVVIEAIIYLMIMVIAKFRGFFLNSKGYFYRSFDREHCRHPLFVRTIGISCLLGGYLIPCLLIPKTTHPLWGWGLYLLGSMSLVYSTIKAYPIPVLAAFTLWMGILGVLLVMACPLYPDGVVRAMSVFIYAVVAIPIAWSAIIRVARSLDYTIDRESQSQLSDQLIKAC*

Protein Length: 469

Fln nts: CTTTGCTTTTGCCTCTGCACATTTTACCTCTCAGACTCATTCCTCTGGGCCATCATCAGAACTTCGTCCCTCTTCCTGTACTGTACGTCATGGGAGAATGATGCTCTTTGCTGCACAAAGATCTTCTTGATCCCTTCCTCTTAATGGCGCTGGCGGTGGACTTTACTGATCTTTACCATTAAAATACACGACCCTGCTTTTCAATGGCGGTAGACAATATGGATGGATTGGGACTGGAATAGCCCTTACGGTTCAGAGAGTTTCGCTTCGCTTGGCAGCTCTGTTGCACTTGTCTTCGAGCCAACACTTCAACTTCTCTTCCGGTTACCAGTTATTTAAATAGGCACATGAATAATGGACGCGAGAGGTCCAAATCCGTTCCCACAATGCGCTTCCCTATAATTTCGCCCAAATCTTTAACGATTTGCTTTTGAATTTGCGGGAGCTCCCTCTTGTTTAATTTTCAGGTTTTCGCGTTACAGCAGGCGCAGTGGATTATCTGTAGCATTGATT_-_ATGGATTCAACAGGTTGGAGGATCGATTCCCGCAATGCATTATTGTTTCTATGTATGTTAGCGATAATTCACGCGGGCGTTACTGTGAATGCGGCGAAGCCACCTGTAACAAACGCGTACGCGACAATGATGTACATGGGGACGCCAAGAGACTACGAGTTTTATGTGGCTGTGCGTGTAATGCTTCGGTCCCTCCGCCGTCTCAATGTGGACGCAGACCTTGTTGTCATCGCTTCCAGAGACGTTCCACAACCATGGATCAACAAACTGCATGGGGATGGTGTCAAGGTAGTCATGGTCGACAACATGGAGAATCCATACAGACACCAATCGAATTTCGACAAACGCTTTACTCTCACCCTCAACAAATTATACGCATGGAATCTCGTCGAGTATGAGCGTGTTGTCATGCTGGATGCAGACAATCTATTTCTGCAAAAAACCGATGAGCTTTTCCAATGTGGGCAGTTCTGTGCTGTCTTCATTAATCCCTGCATCTTCCACACGGGACTCTTCGTTTTACAGCCATCAGAGGTTGTGTTCAAGGATATGTTGAAGCAGCTTGCCAGTGGCCGAGAAAACGAAGATGGTGCAGACCAAGGATTTCTCACAGGATATTTTGATGATATGTTAGGCAAACCTATGTTCCGTCCTAAATTGAATGGATCCAGACAAAATGGGTTATTTCGTCTGCCATTGGGATACCAAATGGACGCATCATACTACTATTTAAAGTTGAGATGGAGCGTACCGTGTGGACCCAACAGTGTGATAACTTACCCAGGTGCTCCATGGTTTAAACCATGGTACTGGTGGTCATGGCCAGTATTGCCACTGGGCATTTCGTGGCACAAACAACGATTAGATACAATAGGGTACGATGAAGAACTACCAGTGGTTGTGATAGAGGCAATTATATACCTGATGATAATGGTCATTGCCAAATTTAGGGGCTTCTTTCTCAACTCAAAGGGTTACTTCTACAGATCCTTTGACAGGGAGCACTGTCGGCATCCTCTGTTTGTGAGAACAATAGGGATATCATGTTTATTGGGAGGTTATCTGATTCCTTGCTTGTTGATACCCAAAACAACACACCCATTATGGGGGTGGGGGCTCTATTTGCTCGGTTCAATGTCTCTTGTATATTCTACCATTAAAGCATATCCAATTCCAGTTTTGGCGGCGTTTACTCTGTGGATGGGCATATTGGGCGTGCTTCTAGTGATGGCGTGTCCTCTATATCCTGATGGGGTGGTGAGAGCGATGTCGGTGTTTATTTATGCAGTAGTGGCAATCCCAATAGCGTGGTCGGCCATTATCAGAGTGGCGAGGTCTCTTGATTACACCATTGACAGAGAATCACAGTCCCAACTATCTGATCAGCTCATAAAAGCGTGTTGA___TGAAGTTTGGTTTCATCTCCCAACAACATTCCTTCAGCTTTTTATGACCTCCCCTGTAACTTCATCCTCCCCACACAACGTTGCTTCAGCTTCTATGGTTCACCTTTTTATTTACATGTTACTGCATCCATCCATGGTCGACAGTGACAGAGATTGTTCGGACTGTTTACGAAGTTTTCATTTTTGACATGAACATGGTTAATCTCGACTGAGCTGACCCATACTATCGGAGTTAACCCATTAGAAGTTGTATGCACTGATAGTTCAACAGGTTCAAGTTCAGTTTTCTTGCAATCTTAGATATTGTATTGACTGATCTCTCAAACGGTCAAGGTCAGTTTTCCTGGAATTATAGAAGTGGTATTGACTTATCTCTCAAAACGTTCATGTTCAGTTTTCTTGTGATCTGGTAGTAGGAACGAAAGTTCTACGCTCTGTTC

Fln Alignment:

Contig10546___KPPVTNAYATMMYMGTPRDYEFYVAVRVMLRSLRRLNVDADLVVIASRDVPQPWINKLHG-DGVKVVMVDNMENPYRHQSNFDKRFTLTLNKLYAWNLVEYERVVMLDADNLFLQKTDELFQCGQFCAVFINPCIFHTGLFVLQPSEVVFKDMLKQLASGRENEDGADQGFLTGYFDDMLGKPMFRPKLNGSRQNGLFRLPLGYQMDASYYYLKLRWSVPCGPNSVITYPGAPWFKPWYWWSWPVLPLGISWHKQRLDTIGYDEELPVVVIEAIIYLMIMVIAKFRGFFLNSKGYFYRSFDREHCRHPLFVRTIGISCLLGGYLIPCLLIPKTTHPLWGWGLYLLGSMSLVYSTIKAYPIPVLAAFTLWMGILGVLLVMACPLYPDGVVRAMSVFIYAVVAIPIAWSAIIRVARSLDYTIDRE
Q8VZP6_______________RPEHKNAYATMMYMGTPRDYEFYVATRVLIRSLRSLHVEADLVVIASLDVPLRWVQTLEEEDGAKVVRVENVDNPYRRQTNFNSRFKLTLNKLYAWALSDYDRVVMLDADNLFLKKADELFQCGRFCAVFINPCIFHTGLFVLQPSVEVFKDMLHELQVGRKNPDGADQGFLVSYFSDLLDQPLFSPPSNGSVLNGHLRLPLGYQMDASYFYLKLRWNIPCGPNSVITFPGAVWLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMPLVIIQAMFYLGIIVVTRLAR--PNITKLCYRRSDRNLTTIQAGFKLIALLSVVAAYIFPFFTIPHTIHPLIGWSLYLMASFALSSISINTLLLPTLPVLTPWLGILGTLLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
333	14		14	71	0.984337
335	83			16	0.994512
337		16		83	0.994512
339	83			16	0.994512
345			85	14	0.993533
346		85		14	0.993533
349	85			14	0.993533
351	14		85		0.993533
355	85	14			0.993533
356	85			14	0.993533
359	14		85		0.993533
361		85		14	0.993533
362			85	14	0.993533
363		85	14		0.993533
367			83	16	0.994512
368	83			16	0.994512
370			83	16	0.994512
372		83		16	0.994512
613		70		30	1.0
679	11			88	0.923564
681		11		88	0.923564
682	88		11		0.923564
687			88	11	0.923564
722		62		37	1.0
810	33		66		1.0
1011		12		87	0.992554
1123	16			83	0.994512
1124		16		83	0.994512
1125	20	80			0.995493
1127		80		20	0.995493
1788	33			66	0.997452
1789		66		33	0.997452
1792			33	66	0.997452
2051		77		22	0.999999
2277			83	16	0.994512
2278	83			16	0.994512
2299		20	20	60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain