SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10538

Length: 2798 nt

UniGene Fasta

>sp_v3.0_unigene10538
CTTCCACATCACAACTGAACTGACGTCATTTCATAGGAAAACGTAAGAAATTCATCGATAAGGAAGGACGGAGCAGAGTATGATTGAGTAGATAAGGACATCCGACTCCCAAAAAATCGTTTGGATTTTTTGAGATCAAGGGGATCTTCTCCACTATATATTCTCCGCTATCTTCTGAGATCGGGGAAGGGGCCGACTGTATTCTCTTCGTTTATGTGTTTGGAAGGCTTAATTGGGCTCCTGGAATTAAATTGTTTTACAGTCGAGGTGTGTGTGGGGAATCATGGTGAAGGTGGAAGTGACCATGGAGGTTGGAGCCGATGGAGTTGCCATAATCAAGATGACCAATCCGCCGGTCAATGCTCTGGCAGTAACAGTTCTTGCAGGCCTGAAAGAAAAATATGACGAAGCAATGAGGAGAAATGATGTGAAGGCCATTGTTGTCACTGGTAATGGAGGCAAATTCTCAGGTGGTTTTGACATCAACGTTCTCCAGGAAGTACAACGGACTGGGAACTTGTCGCATTTGGGTAGAGTTTCTGTTGATCTTATGATCAATACTATTGAAGAGGCTAAGAAACCTTCCGTAGCTGCTATTCAAGGGCTTGCGCTTGGTGGTGGATTAGAATTAGCAATGTCTTGTCATGCCCGTATTTCAACCCCAAAAGCGCAGCTTGGGTTGCCAGAACTTCAACTTGGGATTATTCCAGGATTTGGAGGTACGCAGCGCCTTCCTCGTCTTGTAGGGCTTCAAAAGGCGGTTGAAATGATGCTGTTATCAAAATCGATCATGTCAGAGGAGGGGAGTAAACTAGGTTTAATTGACGCAATTGTATCTCCGGGAGAGTTGATGGCCACAGCACGAATGTGGGCTTTAGATATTGCAGAACGGCGGAGACCCTGGATAATTAGTCTAAAAAGGACCGATAAAATTGAGTCACTAGGGGAAGCACGTGAAATTCTGAAATTTGCAAGGGCTCAGGCAACAAAGGCTGCCCCAAATCTGCCACATCCCCAACTCTGCCTAGATGTTATCGAGGAGGGTATTGTAGCAGGAGGCCTGGCAGGAGTTCTCAAGGAAGAAAAGGGATTTTATGATATTGTTCTCTCAGACACTGCAAAAGGGCTGGTACACTTCTTCTTTGGCCAGCGAGCAACTACAAAGGTTCCCGGAGTGACTGACTTAGGGCTAAAACCAAGACAAATTAAAAAGGTAGCAGTTCTTGGTGGAGGGTTAATGGGTTCAGGTATAGCTACATCTCTTGTTCTCAGTAATATTCCAGTCGTTCTGAAGGAGGTAAATGCTGGTTTTCTTCAGCAAGGTATCAATAGAATTTCAGCAAACCTGAAGAGTCGTGTAAAGAAAGGAAGCATGACACAAGAAAAATTTGAGAAAACTATGTCTCTGATCACGGGAGTTGTAGATTATGCAGAATTCAGGAATGTCGATATGGTGATAGAGGCTGTAATAGAGAAAATTTCCTTGAAGCAAGAAATATTTAGTGACCTGGAAAAGATTTGTCCTGCACACTGCATCTTGGCCTCTAATACATCTACGATTGATCTCAATCTCATTGGTGCAAAAACACATGTTCAAGACCGTATAGTAGGGGCACATTTTTTCAGTCCCGCGCATGTGATGCCACTCCTTGAAATTGTTCGAACAGAGAAAACTTCACCTCAGATTATTGTTGACCTTATAAATGTTGGAAAGAATATAAAGAAAGTCCCTATAGTGGTGGGAAATTGCACCGGCTTTGCTGTCAATCGAATGTTCTTTCCATACACTCAATCGGCTCATATGTTGGCAATTCTTGGTGTAGATATTTATAGAATAGACAAAGTCATCACAAGTTTTGGAATGCCAATGGGTCCGTTCAGATTGCAAGATCTTGTTGGATATGAAGTATCTATTGAGGTTGGCAAGCAATTTGTTACAGCCTTTGGAGATCGAACCTTCAAGACACCACTAACCGAACTTATGATAGAAAATAAACGAGCTGGGGAAAAGAATGGTAAGGGCTACTATATATATGATGAGAAGAGGAGAGCTCGTCCAGCACCTGAGGTCAAAGAGATCATCGAACAAGCAAGAAAAATTTCTAAAATAATGCCTGGTGGAAAGCCTATTGTTGTCACTGACCGGGAAATATTGGAGATGATATTCTTCCCGGTTGTGAATGAGACATGCCGGGTCCTGGATGAAGGGATTGCGATTAAAGCATCAGATCTTGATGTTTCATCTGTCCTAGGGATGGGCTTCCCTGCATACAGAGGCGGGATAGTTTTTTGGGGAGATTCTGTTGGTGCAGGGCATATATACAATAGTCTTAAGAAGTGGTCTGAATCCTATGGTGGACTTTTCAAACCATCTGCTTATTTGGAAGAACGAGCTGCAAGAGGCATTCCCCTGAGTGCACCCGTTGCTGCTAAAAAAGTCGGATCGCGCCTGTAAGATGTACATGCACGAGAGCATTTTATTATCTAAGCAGCAAAGTTGAAAAACATTTCGCACGAGAGTCTTGGCCAGTAATATAGTTACTTTTCCTAGGTGGGTCGAGTCTCTGAGCAAGGTCGAAGCTTATTTTGTGCCTGAGCGGATTGAAGGGGATTGAGAATTTTCTTAATAGATACATTCTCAGACTTTTATAGTTGTAGAAAGAGTTTTGAGATGCACCCCATGGACATATCCAACTTTTAATTACATATGCACAAAAAAATATGGATATGCTTAGCTTTTAATAAAGTGATATTTGGAGCTGAGAGAAGTTATAAAAAATGGATCTAATATTTCCTGT

Ace file of the UniGene sp_v3.0_unigene10538

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[I] COG1250 3-hydroxyacyl-CoA dehydrogenase	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	Crotonase, core	IPR001753	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29010.1	AIM1 Enoyl-CoA hydratase/isomerase family chr4:14297312-14302016 REVERSE LENGTH=721	66%
RefSeq	Arabidopsis thaliana	NP_194630.1	enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002324426.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR51

Fln msg:

Fln protein: MVKVEVTMEVGADGVAIIKMTNPPVNALAVTVLAGLKEKYDEAMRRNDVKAIVVTGNGGKFSGGFDINVLQEVQRTGNLSHLGRVSVDLMINTIEEAKKPSVAAIQGLALGGGLELAMSCHARISTPKAQLGLPELQLGIIPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSEEGSKLGLIDAIVSPGELMATARMWALDIAERRRPWIISLKRTDKIESLGEAREILKFARAQATKAAPNLPHPQLCLDVIEEGIVAGGLAGVLKEEKGFYDIVLSDTAKGLVHFFFGQRATTKVPGVTDLGLKPRQIKKVAVLGGGLMGSGIATSLVLSNIPVVLKEVNAGFLQQGINRISANLKSRVKKGSMTQEKFEKTMSLITGVVDYAEFRNVDMVIEAVIEKISLKQEIFSDLEKICPAHCILASNTSTIDLNLIGAKTHVQDRIVGAHFFSPAHVMPLLEIVRTEKTSPQIIVDLINVGKNIKKVPIVVGNCTGFAVNRMFFPYTQSAHMLAILGVDIYRIDKVITSFGMPMGPFRLQDLVGYEVSIEVGKQFVTAFGDRTFKTPLTELMIENKRAGEKNGKGYYIYDEKRRARPAPEVKEIIEQARKISKIMPGGKPIVVTDREILEMIFFPVVNETCRVLDEGIAIKASDLDVSSVLGMGFPAYRGGIVFWGDSVGAGHIYNSLKKWSESYGGLFKPSAYLEERAARGIPLSAPVAAKKVGSRL*

Protein Length: 725

Fln nts: CTTCCACATCACAACTGAACTGACGTCATTTCATAGGAAAACGTAAGAAATTCATCGATAAGGAAGGACGGAGCAGAGTATGATTGAGTAGATAAGGACATCCGACTCCCAAAAAATCGTTTGGATTTTTTGAGATCAAGGGGATCTTCTCCACTATATATTCTCCGCTATCTTCTGAGATCGGGGAAGGGGCCGACTGTATTCTCTTCGTTTATGTGTTTGGAAGGCTTAATTGGGCTCCTGGAATTAAATTGTTTTACAGTCGAGGTGTGTGTGGGGAATC_-_ATGGTGAAGGTGGAAGTGACCATGGAGGTTGGAGCCGATGGAGTTGCCATAATCAAGATGACCAATCCGCCGGTCAATGCTCTGGCAGTAACAGTTCTTGCAGGCCTGAAAGAAAAATATGACGAAGCAATGAGGAGAAATGATGTGAAGGCCATTGTTGTCACTGGTAATGGAGGCAAATTCTCAGGTGGTTTTGACATCAACGTTCTCCAGGAAGTACAACGGACTGGGAACTTGTCGCATTTGGGTAGAGTTTCTGTTGATCTTATGATCAATACTATTGAAGAGGCTAAGAAACCTTCCGTAGCTGCTATTCAAGGGCTTGCGCTTGGTGGTGGATTAGAATTAGCAATGTCTTGTCATGCCCGTATTTCAACCCCAAAAGCGCAGCTTGGGTTGCCAGAACTTCAACTTGGGATTATTCCAGGATTTGGAGGTACGCAGCGCCTTCCTCGTCTTGTAGGGCTTCAAAAGGCGGTTGAAATGATGCTGTTATCAAAATCGATCATGTCAGAGGAGGGGAGTAAACTAGGTTTAATTGACGCAATTGTATCTCCGGGAGAGTTGATGGCCACAGCACGAATGTGGGCTTTAGATATTGCAGAACGGCGGAGACCCTGGATAATTAGTCTAAAAAGGACCGATAAAATTGAGTCACTAGGGGAAGCACGTGAAATTCTGAAATTTGCAAGGGCTCAGGCAACAAAGGCTGCCCCAAATCTGCCACATCCCCAACTCTGCCTAGATGTTATCGAGGAGGGTATTGTAGCAGGAGGCCTGGCAGGAGTTCTCAAGGAAGAAAAGGGATTTTATGATATTGTTCTCTCAGACACTGCAAAAGGGCTGGTACACTTCTTCTTTGGCCAGCGAGCAACTACAAAGGTTCCCGGAGTGACTGACTTAGGGCTAAAACCAAGACAAATTAAAAAGGTAGCAGTTCTTGGTGGAGGGTTAATGGGTTCAGGTATAGCTACATCTCTTGTTCTCAGTAATATTCCAGTCGTTCTGAAGGAGGTAAATGCTGGTTTTCTTCAGCAAGGTATCAATAGAATTTCAGCAAACCTGAAGAGTCGTGTAAAGAAAGGAAGCATGACACAAGAAAAATTTGAGAAAACTATGTCTCTGATCACGGGAGTTGTAGATTATGCAGAATTCAGGAATGTCGATATGGTGATAGAGGCTGTAATAGAGAAAATTTCCTTGAAGCAAGAAATATTTAGTGACCTGGAAAAGATTTGTCCTGCACACTGCATCTTGGCCTCTAATACATCTACGATTGATCTCAATCTCATTGGTGCAAAAACACATGTTCAAGACCGTATAGTAGGGGCACATTTTTTCAGTCCCGCGCATGTGATGCCACTCCTTGAAATTGTTCGAACAGAGAAAACTTCACCTCAGATTATTGTTGACCTTATAAATGTTGGAAAGAATATAAAGAAAGTCCCTATAGTGGTGGGAAATTGCACCGGCTTTGCTGTCAATCGAATGTTCTTTCCATACACTCAATCGGCTCATATGTTGGCAATTCTTGGTGTAGATATTTATAGAATAGACAAAGTCATCACAAGTTTTGGAATGCCAATGGGTCCGTTCAGATTGCAAGATCTTGTTGGATATGAAGTATCTATTGAGGTTGGCAAGCAATTTGTTACAGCCTTTGGAGATCGAACCTTCAAGACACCACTAACCGAACTTATGATAGAAAATAAACGAGCTGGGGAAAAGAATGGTAAGGGCTACTATATATATGATGAGAAGAGGAGAGCTCGTCCAGCACCTGAGGTCAAAGAGATCATCGAACAAGCAAGAAAAATTTCTAAAATAATGCCTGGTGGAAAGCCTATTGTTGTCACTGACCGGGAAATATTGGAGATGATATTCTTCCCGGTTGTGAATGAGACATGCCGGGTCCTGGATGAAGGGATTGCGATTAAAGCATCAGATCTTGATGTTTCATCTGTCCTAGGGATGGGCTTCCCTGCATACAGAGGCGGGATAGTTTTTTGGGGAGATTCTGTTGGTGCAGGGCATATATACAATAGTCTTAAGAAGTGGTCTGAATCCTATGGTGGACTTTTCAAACCATCTGCTTATTTGGAAGAACGAGCTGCAAGAGGCATTCCCCTGAGTGCACCCGTTGCTGCTAAAAAAGTCGGATCGCGCCTGTAA___GATGTACATGCACGAGAGCATTTTATTATCTAAGCAGCAAAGTTGAAAAACATTTCGCACGAGAGTCTTGGCCAGTAATATAGTTACTTTTCCTAGGTGGGTCGAGTCTCTGAGCAAGGTCGAAGCTTATTTTGTGCCTGAGCGGATTGAAGGGGATTGAGAATTTTCTTAATAGATACATTCTCAGACTTTTATAGTTGTAGAAAGAGTTTTGAGATGCACCCCATGGACATATCCAACTTTTAATTACATATGCACAAAAAAATATGGATATGCTTAGCTTTTAATAAAGTGATATTTGGAGCTGAGAGAAGTTATAAAAAATGGATCTAATATTTCCTGT

Fln Alignment:

Contig10538___MVKVEVTMEVGADGVAIIKMTNPPVNALAVTVLAGLKEKYDEAMRRNDVKAIVVTGNGGKFSGGFDINVLQEVQRTGNLSHLGRVSVDLMINTIEEAKKPSVXXXXXXXXXXXXXXXMSCHARISTPKAQLGLPELQLGIIPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSEEGSKLGLIDAIVSPGELMATARMWALDIAERRRPWIISLKRTDKIESLGEAREILKFARAQATKAAPNLPHPQLCLDVIEEGIVAGGLAGVLKEEKGFYDIVLSDTAKGLVHFFFGQRATTKVPGVTDLGLKPRQIKKVAVLGGGLMGSGIATSLVLSNIPVVLKEVNAGFLQQGINRISANLKSRVKKGSMTQEKFEKTMSLITGVVDYAEFRNVDMVIEAVIEKISLKQEIFSDLEKICPAHCILASNTSTIDLNLIGAKTHVQDRIVGAHFFSPAHVMPLLEIVRTEKTSPQIIVDLINVGKNIKKVPIVVGNCTGFAVNRMFFPYTQSAHMLAILGVDIYRIDKVITSFGMPMGPFRLQDLVGYEVSIEVGKQFVTAFGDRTFKTPLTELMIENKRAGEKNGKGYYIYDEKRRARPAPEVKEIIEQARKISKIMPGGKPIVVTDREILEMIFFPVVNETCRVLDEGIAIKASDLDVSSVLGMGFPAYRGGIVFWGDSVGAGHIYNSLKKWSESYGGLFKPSAYLEERAARGIPLSAPVAAKKVGSRL
B8LR51_______________MVKVDVSMEVGADGVAIIKMTNPPVNALAVTVLAGLKEKYDEAMRRNDVKAIVVTGNGGKFSGGFDINVIQEVQQTGNLSHLGRVSVDLMINTIEDAKKPSVAAIQGLALGGGLELAMSCHARISTPKALLGLPELQLGIFPGFGGTQRLPRLVGLQKAVEMMLLSKSIMSEEGNKLGLIDAVVSPGELMTTARMWALDIAERRRPWIISLKRTDKLESLGEAREILKFARAQAKKTAPNLPHPQLCLDVIEEGIVAGGLAGVLKEEKGFNDIVISDTAKGLVHFFFSQRATTKVPGVTDLGLKPRQIKKVAVLGGGLMGSGIATSLVLSNIPVVLKEVNAGFLQQGINRISANLKSRVKKGSMTEEKFEKTMSLITGVVDYAEFRNVDMVIEAVLEKISLKQEIFSDLEKICPAHCILATNTSTIDLNLIGAKTHVQDRIIGAHFFSPAHVMPLLEIVRTEKTSPQIIIDLINVGKNIKKVPVVVGNCTGFAVNRMFFPYTQAAHMLANLGVDIYRIDKVITSFGMPMGPFRLQDLVGYGVSLEVGKQFVTAFADRTFTSPLTQLMIENKRAGEKNGKGYYVYDEKRRARPAPEVKEIIEQSIKITKIMPGGKAVVVTDREILEMIFFPVVNEACRVLDEGIASKASDLDVSVVLGMGFPSYRGGIVFWADSVGAGHIYSSLKKWYESYGGLFKPCAYLEERAARGIPLSAPVAAKNFGSRL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
182		62	12		1.0
843			85	14	0.999981
863	10	90			0.90298
977	11		88		0.923564
986	90		10		0.90298
1030		10		90	0.90298
1052	11		88		0.923564
1055			88	11	0.923564
1056			88	11	0.923564
1099		12		87	0.992554
1168	10			90	0.90298
1170	10	90			0.90298
1171		90		10	0.90298
1172			90	10	0.90298
1286	33		66		1.0
1480			10	90	0.90298
1490		90		10	0.90298
1645	20		80		0.995493
1870	20		80		0.996423
1871		20	80		0.996423
1872	20		80		0.996423
1874		80		20	0.996423
2456			10	90	0.90298
2468		90		10	0.90298
2484		10		90	0.90298
2485	10	90			0.90298
2487	90			10	0.90298
2512	12		87		0.992554
2515		87		12	0.992554
2516			87	12	0.992554
2701	90		10		0.90298
2704	90		10		0.90298
2716	78	5	15		1.0
2773		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain