SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10494

Length: 1323 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10494

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine-rich receptor-like protein kinase 42 [Arabidopsis thaliana] sp\|Q9FNE1.1\|CRK42_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 42; Short=Cysteine-rich RLK42; Flags: Precursor dbj\|BAB11593.1\| receptor-like serine/threonine kinase [Ar	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Chromosome undetermined scaffold_278, whole genome shotgun sequence	-	-	7.259e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	6.353e-22	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	2.026e-13	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.688e-13	-

Source	Gene names
Sma3	AT1G53440; AT1G56145; A_TM018A10.18; At1g16670; At1g19090; At1g56145; At1g70520; At1g70530; At4g00970; At4g21400; At4g21410; At4g38830; At5g40380; CRK1; CRK2; CRK26; CRK28; CRK29; CRK3; CRK41; CRK42; F14D16.24; F14G9.24; F18E5.20; F19K19.4; F24J13.10; F24

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G40380.1	CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 chr5:16152121-16155038 FORWARD LENGTH=651	51%
RefSeq	Arabidopsis thaliana	NP_198854.3	cysteine-rich receptor-like protein kinase 42 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002314608.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 369 - 702

Fln protein: WHMPR*VCGACDCLAGEEGALMLNPNIAASEFNFKYDILREATSNFKPENKLGEGSFGPVFKGVLPGGREIAVKRLYMSPRLGDAEFVNEANLMSRVEYKNLVKLLGCSVGGSERLLVYEYLPNRSLDEILFDTTRRHLLDWKKRFEIIVGIARGLTYLHDEPDIKIIHRGIKASNILLDEDYRAKIADFGLAKLFAEDLSRLTTTVIGTVGYMAPEYALRGQLTEKADVFSFGVLLLEIISGRKSQSLAADAEFLIEETWKLYKEDRGLEAMDATLEGSYSVEEAIKVIKIGLLCTQAAAALRPSMSRVVWMLTNEVEHDIPSPTKPVFIDLDCEGAHGEVKRPAPENPDGTSRGRTETSAGTLEPR*

Protein Length: 370

Fln nts: CTGGCATATGCCTAGATAAGTCTGCGGTGCCTGTGATTGTTTGGCAGGTGAGGAAGGAGCACTCATGTTAAACCCAAATATAGCTGCTTCGGAATTCAATTTCAAGTATGATATTTTGAGAGAGGCTACCTCTAACTTCAAACCAGAAAATAAGCTCGGCGAAGGAAGCTTTGGACCCGTCTTCAAAGGGGTTCTTCCAGGTGGAAGAGAGATTGCAGTGAAACGTTTGTATATGAGTCCTAGGCTTGGAGATGCTGAATTTGTGAATGAAGCCAATCTAATGAGCCGTGTTGAGTACAAGAATCTAGTCAAACTGCTTGGTTGCTCCGTTGGTGGCTCAGAAAGGCTATTAGTTTATGAATACCTTCCCAACCGGAGTCTCGACGAGATTCTATTCGATACAACGAGACGTCATTTACTTGATTGGAAAAAAAGGTTTGAAATCATTGTCGGAATTGCCCGCGGCCTAACCTATCTTCACGACGAACCTGACATTAAGATAATACACAGAGGTATTAAAGCAAGTAATATTTTACTTGACGAAGATTACAGAGCCAAGATAGCAGACTTTGGGTTAGCCAAACTCTTTGCAGAAGATCTGAGCCGCCTTACGACTACAGTTATAGGAACTGTAGGTTACATGGCCCCTGAGTACGCCTTACGTGGACAGCTGACAGAGAAAGCAGATGTATTCAGCTTTGGAGTGCTTCTACTAGAAATAATCAGCGGAAGAAAGAGTCAGAGTTTGGCTGCAGACGCAGAGTTTCTCATCGAAGAAACATGGAAACTCTATAAAGAAGACAGAGGTTTAGAAGCTATGGATGCCACATTGGAGGGAAGCTATTCAGTGGAGGAAGCGATTAAAGTGATTAAAATTGGTCTTCTGTGCACACAAGCAGCTGCAGCGTTGCGGCCTTCAATGTCCCGCGTGGTGTGGATGCTCACAAATGAGGTAGAACACGATATTCCGTCGCCCACAAAGCCTGTTTTTATAGATCTCGATTGTGAGGGCGCACATGGCGAAGTGAAACGTCCTGCTCCTGAAAACCCTGACGGAACATCAAGAGGTCGCACAGAGACTTCTGCAGGGACTCTGGAGCCGCGGTGA___AAATCAGCCAATGCCGGTTGGCATTATATTAGTTTAGCCTGTTGACATTATATTACTTTAATTTATTATATCTTCTCTCTTTGTTCTTTTAGGCTCTCTCATAAAGACACCTGGGTTTTTATTTCATTCCTGACATATCCTGCGCATTTTGTTTCACCTGGAACAGTACTGTAATCTTCCGAAGTGTATTGGGTTTTTGTTATGAATAATTTGTA

Fln Alignment:

Contig10494___GEEGALMLNPNIAASEFNFKYDILREATSNFKPENKLGEGSFGPVFKGVLPGGREIAVKRLYMSPRLGDAEFVNEANLMSRVEYKNLVKLLGCSVGGSERLLVYEYLPNRSLDEILFDTTRRHLLDWKKRFEIIVGIARGLTYLHDEPDIKIIHRGIKASNILLDEDYRAKIADFGLAKLFAEDLSRLTTTVIGTVGYMAPEYALRGQLTEKADVFSFGVLLLEIISGRKSQSLAADAEFLIEETWKLYKEDRGLEAMDATLEGSYSVEEAIKVIKIGLLCTQAAAALRPSMSRVVWMLTNEVEHDIPSPTKPVFIDLDCEGAHGEVKRPAPENPDGTSRGRTETS
C0PPW7_______________GDEGDSVLMPTIANPELIFKFDILRESTSNFKAENKLGEGGFGSVFKGVLPDGREVAVKRLFMGTRQADAEFLNEANLISRVQHRNLVKLLGCSVEVSERLLVYEYLQNSSLDKILFDPTKRHLLDWKKRSEIILGTARGLAYLHEESDVRVIHRDIKASNILLDDKHRPKIADFGLARFFAEDQSHVSTRVAGTLGYMAPEYALRGQLTEKADVFSFGVLVLEIISGRKNQSSTEDMEFLIEGTWRLYKANRGLEIMDPALKDSYSWEDGIRAIKIGLLCTQAAAALRPSMFRVVSMLTSEREH-LPSPTRPAFIDLDAAGAAQQLKRGRIIDPERTSSSAATSS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1124		75		25	0.996473
1155	50		50		1.0
1171	50		50		1.0
1206		50	50		1.0
1208		50	50		1.0
1221	33	66			0.997452
1223			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain