SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10489

Length: 2554 nt

UniGene Fasta

>sp_v3.0_unigene10489
CGTCGTGACCTTGGCTGTCACTCAAGCTCAAGGTGAAGAAGAGGAAATGGGTGATGGACATGAAGGTGAAGAAGAGAATGAGGAGGATGAACAACATGAACTTGTCAAAGAAAGGCGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCCACTGAAGAAGATCTCAGAAAAGTATTTAGTGAAGTTGGTGAAGTACTTGAAATCAGACTTATGATGAATCCCCAAACACAGAAAAACAAAGGATTTGCCTTTATACGTTATGCAACTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTTAAGAATCCACAGGTTAGGGGTAAAGTTTGTGGGGTCTCACCTAGCCAGGACAATGACACAATTTTTCTGGGCAATATTTGCAAGACGTGGACAAAGGAAGCTCTAAAAGGGAAGCTGAAAAGCTTTGGTATTGATAATATCGAGGATTTAACTCTAGTTGAAGATCCTAAAGACGAGGGAATGAATCGTGGCTTCGCCTTTCTAGAGTTTTCAGCCCGTTCAGATGCCATGAATGCATACAAACGGCTGCAAAAGCGAGATGTTGTATTAGGTACTGATAAAACTGCGAAGGTCTCATTCGCAGAGACATTCATTGAGCCTGATGAGGAAGTTATGGCACAGGTTAAGACTGTATTTATAGATGGACTGCCACCTTCCTGGGATGAAGATCGAATCAAAGAGCAATTTAAGAAATATGGTGATACCGAGAAAATTCAGTTGGCTCGCAACATGCCTTCTGCTAGGCGGAGGGACTTTGGATTTGTACTTTTTTGACCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATGACAATGGGCTTGGAGAAGGTGATAATAAGGTCAAGGTGAAGGCAAGATTATCGAAGCCTCATCAAAGAGGAAGATTATTGAAACATGGTGTTCGTGGTGGTTATAAAATTGGGCGTGGTCGTGGCAGTACACGGGGTGGCAGGGGCCCATGGGTTCGTGCCCCTGCCCATTTTGAACCTCGGAGGTTTGGAGGTCGTGGTGGTCGCTTCACTGGTCGAGGGGGTCAAATTGGAGGTCGTGGAGTAAAGCGCCCTCTGGGACGCAGTTTAGCATATCCACCTGTATCGGAGAGACTTCCAAGTAGGCGCCCACCACCACTTGAAAGGGTACGAGATAGGCGCCCACCAGCTCCAGCATATCCGAGGACTAATTCAAGAAGGGATTATGGAAGACGGGATGAACCGTACAATGATCGTGAAGTGCGATCAGGTCGTTCAGATCCTGATTTTGCAACTCGTGCTGCTGCTGCAAGGCGTTCATCTTATAGAGATGGTTATGCAAATCGCAGGTCTAGTAGCTATTCAGACAATGCACCTCCTCGAGGAGTGTCAAGGACTGCGTCACGTAGACCTCCATATCCAGAAGAAAGCTATGGGCGGCGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGGCCATATTCAGCAGTGGAAGAACCACCTAGATATGAAGAACCAGCTATGAGGAATTCGAGGGCGCGCTTAGACTACGGTGTCAGTGCTAGTGCATCACACTATGGGGATTATGGTGAATCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATACGGGTAGTGCTAGACAGGACTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGCTATGGAGGAAGTAAACCATACAGTTCTCTTGGGCGCAGTGAAGCTGGTGGAACATATTCAAGCTATGCCAATGATTATTTGTCCGGTGGGGCTGATATCGGTGGAGGTTCTTATTCTTCTCTGTATTCAAGCCGCAGTATGGGTAGTGGATACTTACCTGGCAGTGGCTCTGGATCCTATTATTAAATTATTTGTGTTCACGAGGATGTTGTAGGCTGGCATAGATTCAGAGCCTGTGATGCGTATGATTACTTTGGTAGTTTTCACCAGCTAAAACCCAGCCTTCAGTTATTATTGATAAAGAGAAGCCTCTTTGATTTGAGGTTGAATTTAATGGATGGATGTAAGTGGGCGCCATAAAACTAGACAAGCTACAAGTAATGGGTTCAAAAGATTTCAAAAGATAGTGAAGGTAGCAGTGTGTGGCAAAAGATATTTTGATTCCTGATGTGGGATGATATATAGGCGGGAGATGAATTCAGACAATTGTTATTTACATGTAGCCAAGATTATTTCTTTTTTGGTAGGATTTTGTGGTGCAAGGACTATGACAGATAAAGATTTTATGCAATTGAAAGTGCATGTAAGAGTATATTTCAGTTTTATGGTTTTAAGGTGCTCTGCAAATATTTACATATAAGTGCAATCTCAGCTGCTTTAATTGATGGGGTTTTAATTATACAGCAGCAAATATATCCAAGTTTAAGGTTTAGATGGCGACATGGAATGATTTAGTATGCCATTGCTGCTAAGTACTTTACTGTGCCCTTTCTCTGCTGTGCAAGTATGACAATTAAGAAAAAAGAACAACGACATTAAGAAACCC

Ace file of the UniGene sp_v3.0_unigene10489

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	At2g44710; At2g44720; GSVIVT00006155001; GSVIVT00019044001; GSVIVT00027062001; GSVIVT00036809001; MtrDRAFT_AC149129g30v2; OJ1014_E09.27; OSJNBa0075N02.121; OSJNBb0038F03.1; OSJNBb0103I08.18; Os04g0543200; OsI_16837; OsI_17174; OsI_25123; OsJ_15642; OsJ_23

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr2:18432902-18436629 FORWARD LENGTH=809	64%
RefSeq	Arabidopsis thaliana	NP_850422.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002302501.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW5

Fln msg: your sequence is longer than subject: 255 - 219

Fln protein: MGDGHEGEEENEEDEQHELVKERRKRKEFEVFVGGLDKDATEEDLRKVFSEVGEVLEIRLMMNPQTQKNKGFAFIRYATVDQAKRACTELKNPQVRGKVCGVSPSQDNDTIFLGNICKTWTKEALKGKLKSFGIDNIEDLTLVEDPKDEGMNRGFAFLEFSARSDAMNAYKRLQKRDVVLGTDKTAKVSFAETFIEPDEEVMAQVKTVFIDGLPPSWDEDRIKEQFKKYGDTEKIQLARNMPSARRRDFGFVLF*

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTCAAGGTGAAGAAGAGGAA_-_ATGGGTGATGGACATGAAGGTGAAGAAGAGAATGAGGAGGATGAACAACATGAACTTGTCAAAGAAAGGCGCAAGCGAAAGGAATTTGAAGTATTTGTTGGTGGCCTTGACAAGGACGCCACTGAAGAAGATCTCAGAAAAGTATTTAGTGAAGTTGGTGAAGTACTTGAAATCAGACTTATGATGAATCCCCAAACACAGAAAAACAAAGGATTTGCCTTTATACGTTATGCAACTGTTGATCAAGCTAAGCGAGCTTGCACAGAACTTAAGAATCCACAGGTTAGGGGTAAAGTTTGTGGGGTCTCACCTAGCCAGGACAATGACACAATTTTTCTGGGCAATATTTGCAAGACGTGGACAAAGGAAGCTCTAAAAGGGAAGCTGAAAAGCTTTGGTATTGATAATATCGAGGATTTAACTCTAGTTGAAGATCCTAAAGACGAGGGAATGAATCGTGGCTTCGCCTTTCTAGAGTTTTCAGCCCGTTCAGATGCCATGAATGCATACAAACGGCTGCAAAAGCGAGATGTTGTATTAGGTACTGATAAAACTGCGAAGGTCTCATTCGCAGAGACATTCATTGAGCCTGATGAGGAAGTTATGGCACAGGTTAAGACTGTATTTATAGATGGACTGCCACCTTCCTGGGATGAAGATCGAATCAAAGAGCAATTTAAGAAATATGGTGATACCGAGAAAATTCAGTTGGCTCGCAACATGCCTTCTGCTAGGCGGAGGGACTTTGGATTTGTACTTTTTTGA___CCCATGATGCTGCAGTAGCATGTATAGATGGAGTTAATGACAATGGGCTTGGAGAAGGTGATAATAAGGTCAAGGTGAAGGCAAGATTATCGAAGCCTCATCAAAGAGGAAGATTATTGAAACATGGTGTTCGTGGTGGTTATAAAATTGGGCGTGGTCGTGGCAGTACACGGGGTGGCAGGGGCCCATGGGTTCGTGCCCCTGCCCATTTTGAACCTCGGAGGTTTGGAGGTCGTGGTGGTCGCTTCACTGGTCGAGGGGGTCAAATTGGAGGTCGTGGAGTAAAGCGCCCTCTGGGACGCAGTTTAGCATATCCACCTGTATCGGAGAGACTTCCAAGTAGGCGCCCACCACCACTTGAAAGGGTACGAGATAGGCGCCCACCAGCTCCAGCATATCCGAGGACTAATTCAAGAAGGGATTATGGAAGACGGGATGAACCGTACAATGATCGTGAAGTGCGATCAGGTCGTTCAGATCCTGATTTTGCAACTCGTGCTGCTGCTGCAAGGCGTTCATCTTATAGAGATGGTTATGCAAATCGCAGGTCTAGTAGCTATTCAGACAATGCACCTCCTCGAGGAGTGTCAAGGACTGCGTCACGTAGACCTCCATATCCAGAAGAAAGCTATGGGCGGCGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGGCCATATTCAGCAGTGGAAGAACCACCTAGATATGAAGAACCAGCTATGAGGAATTCGAGGGCGCGCTTAGACTACGGTGTCAGTGCTAGTGCATCACACTATGGGGATTATGGTGAATCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATACGGGTAGTGCTAGACAGGACTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGCTATGGAGGAAGTAAACCATACAGTTCTCTTGGGCGCAGTGAAGCTGGTGGAACATATTCAAGCTATGCCAATGATTATTTGTCCGGTGGGGCTGATATCGGTGGAGGTTCTTATTCTTCTCTGTATTCAAGCCGCAGTATGGGTAGTGGATACTTACCTGGCAGTGGCTCTGGATCCTATTATTAAATTATTTGTGTTCACGAGGATGTTGTAGGCTGGCATAGATTCAGAGCCTGTGATGCGTATGATTACTTTGGTAGTTTTCACCAGCTAAAACCCAGCCTTCAGTTATTATTGATAAAGAGAAGCCTCTTTGATTTGAGGTTGAATTTAATGGATGGATGTAAGTGGGCGCCATAAAACTAGACAAGCTACAAGTAATGGGTTCAAAAGATTTCAAAAGATAGTGAAGGTAGCAGTGTGTGGCAAAAGATATTTTGATTCCTGATGTGGGATGATATATAGGCGGGAGATGAATTCAGACAATTGTTATTTACATGTAGCCAAGATTATTTCTTTTTTGGTAGGATTTTGTGGTGCAAGGACTATGACAGATAAAGATTTTATGCAATTGAAAGTGCATGTAAGAGTATATTTCAGTTTTATGGTTTTAAGGTGCTCTGCAAATATTTACATATAAGTGCAATCTCAGCTGCTTTAATTGATGGGGTTTTAATTATACAGCAGCAAATATATCCAAGTTTAAGGTTTAGATGGCGACATGGAATGATTTAGTATGCCATTGCTGCTAAGTACTTTACTGTGCCCTTTCTCTGCTGTGCAAGTATGACAATTAAGAAAAAAGAACAACGACATTAAGAAACCC

Fln Alignment:

Contig10489___LVKERRKRKEFEVFVGGLDKDATEEDLRKVFSEVGEVLEIRLMMNPQTQKNKGFAFIRYATVDQAKRACTELKNPQVRGKVCGVSPSQDNDTIFLGNICKTWTKEALKGKLKSFGIDNIEDLTLVEDPKDEGMNRGFAFLEFSARSDAMNAYKRLQKRDVVLGTDKTAKVSFAETFIEPDEEVMAQV
A9NMW5_______________VAKERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAETFVDPDEEVMAQI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1033	12	87			0.992554
1035		87	12		0.992554
1090	12		87		0.992554
1092		87	12		0.992554
1108	10	90			0.90298
1110		90	10		0.90298
1111			10	90	0.90298
1126		90		10	0.90298
1188	11		88		0.923564
1521		88		11	0.923564
1921		9		90	0.999872
2396	12			87	0.992554
2397		12	87		0.992554
2418		83		16	0.994512
2533	66	33			0.997452
2534	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1308	1319	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain