SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10476

Length: 1375 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10476

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7U593_VITVI	-	-	0.0	45%
FL-Next	tr=Extensin-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	At2g16630	-	-	8.285e-06	-

Source	Gene names
Sma3	At2g16630; GSVIVT00036073001; POPTRDRAFT_556598; RCOM_0738830; VITISV_029831;

Source	GOs	Term	Type	e value	Identity
Sma3	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002305491.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E0ZE90

Fln msg: your sequence is longer than subject: 333 - 159

Fln protein: MGSIRTSELFAVLVLVVVAGYADAVATIVGNVFCDQCRDGQRSLFDVPIYGAKVGVECRDSDGQMTMSMQETTDLLGDFIMKVDGTPDMSGCSARVIDSPADSGCNITASPAQPLKLSFKLFSVELYIVGSLFCQPLKPMASLCPNTDPPAITPPHNLPVFSPPNRAPPATAPPRNPPSLPQPHPAPPATTPPTHSSPIISLPPLPFFQDSACSYEYWVKIQYRCYWRLVSPNTKVSFAFGEAAAKKYGRNMTLWEGLQGRGDVYRVLLREATTSLLNSYNSFSFRYNTLNVFLHMNSALQGSLHDALKQALYFKRANLGGGNTKCLLKPCK*

Protein Length: 334

Fln nts: ATGGGGAGATGATAGAAGCTATCGTCGTGACCTTGGCTGTCACTCAAAGTTTTCAGAGTCATGCCTCTATATAAATCTCTGCATATACTTATTCCCCAGGAAGGAAATAAAAAGGTTGCTTGACCGTCTAACAGGAAGGGCTAGGGAGCA_-_ATGGGTAGCATTCGAACATCGGAACTGTTTGCAGTTCTGGTTCTTGTGGTAGTTGCAGGATATGCTGATGCAGTGGCCACAATAGTGGGCAATGTGTTTTGTGATCAATGTCGGGATGGTCAACGTTCTCTCTTTGATGTTCCTATATATGGGGCAAAAGTAGGAGTTGAATGCAGAGATAGTGATGGACAGATGACAATGTCGATGCAGGAAACCACTGATCTGCTCGGAGACTTCATCATGAAAGTTGATGGTACTCCTGACATGTCTGGATGTTCCGCTAGAGTCATCGACAGCCCGGCAGATTCTGGATGCAACATAACCGCGAGCCCGGCCCAGCCCCTCAAGCTGAGCTTCAAGCTGTTCAGTGTGGAACTGTACATAGTGGGTTCTCTCTTCTGTCAACCACTCAAGCCTATGGCCTCATTATGTCCCAACACTGACCCACCTGCAATTACCCCTCCACACAATCTTCCCGTTTTTTCTCCGCCCAACCGCGCCCCACCTGCAACCGCCCCTCCACGTAATCCTCCTTCTCTTCCACAGCCGCACCCTGCCCCACCTGCAACAACTCCTCCCACTCACTCATCTCCCATCATCTCTTTACCACCGCTGCCATTCTTTCAGGATTCTGCCTGTTCTTACGAGTATTGGGTAAAGATACAATACAGGTGTTACTGGAGGCTAGTGAGTCCTAATACCAAAGTGAGTTTTGCATTTGGGGAAGCAGCTGCGAAGAAGTATGGAAGAAACATGACTCTGTGGGAAGGCTTACAAGGACGAGGGGATGTGTATAGAGTATTGCTCAGAGAAGCAACAACATCACTCCTCAATTCTTATAACAGTTTTAGCTTTCGTTACAATACTCTCAACGTATTTCTGCATATGAACTCTGCATTACAAGGATCTCTCCATGATGCTCTAAAACAAGCTTTATATTTCAAGAGAGCTAATCTGGGAGGAGGAAATACTAAGTGCCTGCTTAAACCTTGTAAATGA___CCACCAACAAAGGAGATCAACTGTCCACAAGTCTTACTTTTTCCAGTACATCATGCTTCCTCCTCTTCTTGTTAGCATATCAATGGCATACCCGCCATTTATTTATGCTCTCTATATACATTGTAGTAGCAGGTATATTACTGCAGAACATATATATTCATCGATGAATCCACATCCACATTACCATATATTTATCGCATTTCAATGTCTCTAAATTTATATATCT

Fln Alignment:

Contig10476___IVGNVFCDQCRDGQRSLFDVPIYGAKVGVECRDSDGQMTMSMQETTDLLGDFIMKVDGTPDMSGCSARVIDSPADSGCNI-TASPAQPLKLS
E0ZE90_______________VTGKVYCDNCAAGYPTRISPPIPGATVAVECKDRAGKRLFYNEQSTDNNGLFNIAVQGEHEHDACEAFTVSSP--TSCNIPTDSSRGPVFLT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1337		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain