SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10465

Length: 1018 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10465 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative prolyl endopeptidase [Arabidopsis thaliana]	-	-	0.0	65%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%
Sma3	Putative prolyl endopeptidase	-	-	7.067e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prolyl oligopeptidase.	EC:3.4.21.26	-	7.067e-09	-

Source	Gene names
Sma3	At1g76140; CHLREDRAFT_103061; CHLREDRAFT_147894; F14O10.2; GSVIVT00015534001; OSJNBa0084K11.14; Os01g0108200; Os04g0561500; OsI_00077; OsI_16976; OsJ_00069; OsJ_15773; P0482C06.18; PHYPADRAFT_114923; PHYPADRAFT_178375; PHYPADRAFT_182722; PHYPADRAFT_199126

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76140.1	Prolyl oligopeptidase family protein chr1:28571187-28574852 FORWARD LENGTH=795	65%
RefSeq	Arabidopsis thaliana	NP_001117606.1	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002300671.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1JSY1

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 339 - 727

Fln protein: YSRYPAPKEGDGIDAGTETNINLDHQLFYHFLGTNQSEDILCWKDSEHPKWSVDSEITEDGKYVLLSITEGCDPVNRLFYCDLTALPQGLEGFKGKKEMLPFQKLIDNFEAQYDLVANDGSVFTFRTNKNAPRYKLVRIDFTQPEAWSDVVRESEDVLELACCVNGNQLLLSYLSDVKYVLQIRDLQSGHLLHNLPIDIGSLDEISGRRKDKEIFIFFTSFLTPRVIYRCNLDVEKPELVVFREIVVPGFDRTEFETKQVFINSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNYSITPQFDVGRIVISRHLGAVFAIANIRGGGEYGEEWHKAGS

Protein Length: 340

Fln nts: TTACAGCCGTTATCCAGCTCCCAAGGAAGGAGATGGGATAGACGCAGGAACAGAAACGAATATCAATCTTGATCATCAACTATTTTACCATTTCTTGGGCACCAATCAATCTGAAGATATTCTCTGCTGGAAAGATTCAGAACATCCCAAGTGGTCAGTTGACTCTGAAATAACTGAAGACGGAAAGTATGTTCTTTTATCTATTACAGAAGGCTGTGACCCTGTGAACCGGCTCTTTTATTGTGATCTCACTGCTCTTCCTCAAGGCCTTGAAGGTTTCAAAGGCAAGAAGGAGATGCTTCCTTTCCAAAAACTTATTGATAACTTTGAAGCACAGTATGATCTTGTTGCAAATGATGGTTCTGTGTTCACTTTCCGAACCAATAAAAATGCTCCTAGGTATAAATTAGTCCGCATAGACTTTACGCAGCCAGAGGCTTGGAGTGACGTTGTTCGAGAATCTGAGGACGTGCTTGAATTAGCTTGCTGTGTCAATGGCAATCAACTTCTATTAAGCTATTTAAGTGATGTCAAATATGTTCTGCAAATACGGGACTTGCAATCGGGACACTTGCTTCATAATTTGCCAATAGATATTGGGTCACTTGATGAGATATCGGGAAGGCGTAAAGACAAGGAGATATTTATTTTTTTTACAAGCTTTCTTACCCCTCGCGTTATCTATCGATGCAACCTTGATGTCGAAAAACCGGAGTTGGTAGTTTTCAGAGAGATTGTTGTTCCAGGGTTTGATCGGACAGAGTTTGAAACTAAACAGGTTTTCATAAACAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTATATGGTTATGGGGGCTTTAACTATAGCATCACCCCACAGTTCGATGTTGGTCGTATTGTCATTTCAAGGCATCTAGGGGCAGTTTTTGCAATTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCT

Fln Alignment:

Contig10465___YSRYPAPKEGDGIDAGTETNINLDHQLFYHFLGTNQSEDILCWKDSEHPKWSVDSEITEDGKYVLLSITEGCDPVNRLFYCDLTALPQGLEGFKGKKEMLPFQKLIDNFEAQYDLVANDGSVFTFRTNKNAPRYKLVRIDFTQPEAWSDVVRESE-DVLELACCVNGNQLLLSYLSDVKYVLQIRDLQSGHLLHNLPIDIGSLDEISGRRKDKEIFIFFTSFLTPRVIYRCNLDVEKPELVVFREIVVPGFDRTEFETKQVFINSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNYSITPQFDVGRIVISRHLGAVFAIANIRGGGEYGEEWHKAGS
I1JSY1_______________YSRYPAPKDGEVVDAGTETNANLHHQLYYHFLGTDQSEDILCWRDPENPKYTFGGSVTDDGKYILLHIAEGCDPVNKLYYCDLSKLPNALEGFRNGNSLLPFAKLIDNFDAQYEAIANDDTVFTFLTNKDAPKYKIVRVDLKEPTAWADVLQESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLKTGSLLHQLPIEIGSVSEISARREDSVVFIGFTSFLTPGIIYQCNLGTEIPDMKIFREIVVPGFDRSEFHVKQDFVTSKDGTKIPMFIVAKKDITLDGSHPCLLYGYGGFNINITPYFSVSRIVLTRHLGVVFSIANIRGGGEYGEEWHKAGS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
512	81			18	0.999994
622	88	11			0.923564
623		11	88		0.923564
624		11	88		0.923564
626			88	11	0.923564
828	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
33	44	CAC CAC CAC CAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain