SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10463

Length: 1562 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10463

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine protease [Gossypium hirsutum]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09850.1	XBCP3 xylem bark cysteine peptidase 3 chr1:3201848-3203875 FORWARD LENGTH=437	51%
RefSeq	Arabidopsis thaliana	NP_563855.1	xylem bark cysteine peptidase 3 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002317418.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P285

Fln msg:

Fln protein: MANPVHLLLISATIICFFSASTAVQPYEVEDINSENGLVRLFDLWLGKHGKLYGSHEEKARRFQIFRTNLNYIHAHNKNSSSRFRLGLNKFADLTNEEFKSRYFGKNSRQWRDKRRTELEGAEFRSILKQRVGSQSSSCSTASSLDWRTKGVVTGVKDQGQCGSCWAFSTTGAIEGVNAISTGKLVSLSEQELVDCDATNYGCEGGDMDYAFTWVIKNGGIDTEKDYSYTGIDSTCNTKKEAKKIVSIDGYTDVDSEDSALLCAVGSLPVSVGIDGSAMDFQLYSGGIYDGDCSSNPDDIDHAVLVVGYSATNGKDYWIVKNSWGTDWGIDGYFYILRNTELPYGVCAINAMASYPTKTESSVQPK*

Protein Length: 368

Fln nts: ATATGGGGATGCTCAATTAATCGCGAGAG_-_ATGGCCAATCCTGTGCATTTGCTTTTAATTTCTGCCACAATCATCTGTTTTTTTTCGGCTTCAACGGCCGTGCAACCTTATGAAGTCGAAGACATTAATTCCGAGAATGGATTGGTAAGGCTATTCGATCTGTGGCTCGGCAAGCACGGTAAGCTGTACGGAAGCCATGAGGAGAAAGCGAGACGATTCCAGATTTTCAGAACAAATCTCAACTATATCCACGCTCACAATAAGAATTCCAGTTCTCGTTTCCGGTTGGGTTTAAATAAGTTCGCAGACCTTACAAATGAGGAGTTCAAGTCTCGCTACTTCGGTAAAAATTCAAGGCAATGGAGGGACAAGAGGAGAACAGAGCTTGAAGGTGCAGAGTTCAGGTCTATTTTGAAGCAGAGAGTGGGATCTCAGAGCTCTTCGTGTAGTACCGCATCGTCGCTCGATTGGAGGACTAAAGGAGTAGTTACAGGAGTGAAGGATCAGGGTCAATGTGGGAGTTGTTGGGCTTTCTCAACAACAGGAGCGATTGAGGGAGTAAACGCCATATCAACTGGCAAGCTTGTCAGCCTGTCCGAACAAGAACTGGTAGACTGTGATGCCACTAACTATGGCTGCGAGGGAGGAGACATGGACTATGCTTTTACGTGGGTCATAAAAAACGGAGGAATTGATACAGAAAAGGATTATTCTTACACCGGAATAGATTCTACCTGTAATACTAAAAAGGAAGCAAAGAAAATTGTTTCCATAGACGGCTACACCGATGTAGACTCTGAAGATTCAGCATTGCTCTGCGCTGTGGGCAGTCTGCCTGTCAGCGTTGGTATTGATGGTTCAGCCATGGATTTTCAACTTTACAGTGGGGGAATTTATGATGGAGATTGTTCAAGCAATCCCGATGACATCGACCATGCAGTATTGGTTGTGGGATATTCAGCCACAAATGGAAAAGATTATTGGATTGTGAAGAACTCGTGGGGTACGGACTGGGGTATTGATGGCTATTTCTATATTCTACGAAATACTGAACTCCCTTATGGTGTGTGTGCTATAAACGCCATGGCCTCCTATCCCACAAAGACGGAATCGTCAGTACAGCCTAAATGA___GTTAGGCTTCATGGCTTTCCCACCAGTTTAGTCTGGTTGACGATAGTTTAGTTTGGCTGAGGATATATGTGCCCTCTTTCAGGCCTCTTCATTGTTTTAAAGTGTGATATATATATATGCGTATCTTTGTATGAACAAAAGTATATTGAAATTGTGTCTAGTGCATTAAAGGGCCTCTTTCCTGTTTGGAGTAGTAAGCGTATAAATTTAAATTGGTTGAAGAGCTTGTGTTGTTGATACTTCTGATTAATTCAATTAAACTAATTTGGCCATGTTGGACATGGGCAAGAAATAGTAGAACTATATTTCAGATTACCCTGCTGTGTGTGCTTAATTAGTACAATTGAAGATCGGTATAAGCCCCAGGTTTTTGAGTTTCATAACAAAGGAATGTAATCTTGTCTGTCTGTGAACTGAAGATTGGTTGAAGGG

Fln Alignment:

Contig10463___MANPVHLLLISATIICFFSASTAVQ-PYEVEDINSENGLVRLFDLWLGKHGKLYGSHEEKARRFQIFRTNLNYIHAHNKNSSSRFRLGLNKFADLTNEEFKSRYFGKNSRQWRDKRRTELEGAEFRSILKQRVGXXXXXXXXXXXLDWRTKGVVTGVKDQGQCGSCWAFSTTGAIEGVNAISTGKLVSLSEQELVDCDATNYGCEGGDMDYAFTWVIKNGGIDTEKDYSYTGIDSTCNTKKEAKKIVSIDGYTDVDSEDSALLCAVGSLPVSVGIDGSAMDFQLYSGGIYDGDCSSNPDDIDHAVLVVGYSATNGKDYWIVKNSWGTDWGIDGYFYILRNTELPYGVCAINAMASYPTKTESSVQPK
A9P285_______________MANPLHLLLISATIICLVSAAKAVQHSYEVGDINSGNGLVRLFDRWLGRHGKLYGSHEEKARRLQIFRTNLQYIHAHNKNSNSSFRLGLNKFADLTNEEFKTRYFGKNSKQWRDRRRTELEGAELRPVLKQTVGSQSSSCSIASSLDWRKKGAVTGVKDQAQCGSCWAFSTTGAIEGVNFISTGKLVSLSEQELVACDATNYGCEGGDMDYAFTWVIQNGGIDTEKDYSYTGVDSTCNTNKEAKKIVSIDGYTDVSPDDSALLCAAGSQPVSVGIDGSAIDFQLYTGGIYDGDCSGNPDDIDHAVLVVGYSAKNGKDYWIVKNSWGTDWGLEGYFYILRNTELPYGVCAINAMASYPTKTESSVQSK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
674	11	88			0.923564
681	85		14		0.993533
682	85			14	0.993533
685			85	14	0.993533
686	83	16			0.994512
688			85	14	0.993533
689	88			11	0.923564
760	10	90			0.90298
913	4		88	8	0.999262
1196		4		95	0.996252
1197	95		4		0.996599
1202	4	95			0.996599
1208			4	95	0.997218
1209			4	95	0.997218
1212			92	7	0.999999
1214		92		7	0.999999
1216	4			95	0.997218
1249	11		85	3	1.0
1250	3	84		11	1.0
1251	15		84		1.0
1255	11	88			1.0
1257	8			91	0.999766
1270	82			5	0.999919
1288	37	62			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1237	1248	AT AT AT AT AT AT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain