SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10448

Length: 1801 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10448

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase [NADP], chloroplastic n=2 Tax=Flaveria RepID=MDHP_FLABI	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	malate dehydrogenase (NADP+) activity	GO:0046554	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, NADP-dependent, plants	IPR011273	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58330.1	lactate/malate dehydrogenase family protein chr5:23580010-23582287 REVERSE LENGTH=443	82%
RefSeq	Arabidopsis thaliana	NP_568875.2	lactate/malate dehydrogenase family protein [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002311056.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX63

Fln msg:

Fln protein: MAMADISFTGTSQLLQRKTNVSLYRLNSSFLPQKPAKFSFNVNTEKCFPSMKVVCSVAPSQTQAPTPAPTTTLTPDGKRTDCFGIFCLTYDLKEEEKQKSWKKLIKVAVSGAAGMISNHLLFMIASGEAFGQDQPIALQLLGSERSFTALEGVAMELEDSLYPLLREVSIGVDPYEVFRDAEWALLIGAKPRGPGMERADLLDINGQIFAAQGKALNDVASPNVKVLVVGNPCNTNALICLKNAPKIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIHGRPVKEIITDIKWLENEFTEKVQKRGGVLIKKWGRSSAASTAVSIVDAIKSLTIPTPEGDWFSSGVYTTGNPYGIADDIVFSMPCRSKGDGDYELVPEIIFDESLRARIKKSEDELVAEKRCVAHLIGEGDGYCDLPGDTTLPGEQ*

Protein Length: 449

Fln nts: ATGGGGAAAGAAATTTTTAATAAAATTTGGGGTCTGTCAAAAATTTGAAAACGGGATATCCCATCGCGGCACAACTCTGAATTTAATACAACAAAAACCCATCTATATTCTACTCTTCAACTCAATTTAAGCTCCGACATCTCTGAATTCACGGTGTCTGATCAGCTTGGAT_-_ATGGCCATGGCCGATATCTCGTTTACTGGGACATCTCAGCTTTTGCAGAGGAAGACGAACGTCTCTTTATATCGTCTGAACAGTTCTTTCTTGCCACAAAAACCAGCCAAGTTCTCCTTCAATGTCAATACAGAAAAATGTTTCCCGTCCATGAAAGTTGTCTGCTCAGTTGCTCCAAGCCAAACTCAGGCGCCAACCCCTGCACCCACTACCACCCTGACTCCGGACGGGAAGAGAACAGATTGCTTTGGCATTTTTTGTCTTACATATGATCTAAAAGAGGAAGAAAAGCAGAAGTCATGGAAGAAGCTGATAAAAGTTGCAGTATCAGGTGCTGCAGGAATGATATCAAATCATCTGCTTTTCATGATTGCCTCTGGGGAAGCTTTTGGGCAAGATCAACCAATTGCATTGCAACTGCTTGGGTCGGAGAGGTCATTCACAGCTCTAGAAGGTGTTGCAATGGAACTTGAAGATTCTTTATACCCTTTGCTGAGAGAGGTTAGCATAGGTGTGGATCCATATGAGGTTTTCCGTGATGCTGAATGGGCTCTCCTTATTGGAGCAAAGCCACGTGGGCCTGGAATGGAACGGGCTGACTTACTTGACATAAATGGACAGATTTTTGCAGCACAGGGAAAGGCTCTTAATGATGTTGCAAGCCCAAATGTAAAGGTTCTAGTAGTGGGCAATCCATGCAATACAAATGCCTTAATTTGCCTTAAGAATGCACCCAAGATTCCCCCTAAAAACTTTCATGCATTGACAAGGCTGGATGAAAATAGAGCTAAGTGTCAGCTTGCTCTAAAAGCTGGAGTGTTCTATGATAAGGTGTCAAACATGACAATTTGGGGAAATCATTCAACAACTCAGGTTCCAGATTTTCTCAATGCGAAAATTCATGGAAGACCTGTAAAAGAGATTATCACAGATATCAAGTGGTTGGAAAATGAATTCACTGAAAAGGTTCAAAAGCGTGGAGGTGTCTTGATAAAGAAATGGGGAAGATCTTCAGCTGCATCTACTGCCGTCTCAATTGTGGATGCGATAAAATCACTCACCATCCCCACTCCTGAAGGGGACTGGTTTTCTTCAGGGGTGTACACGACTGGAAATCCTTACGGAATTGCAGATGACATTGTATTTAGCATGCCATGCAGATCAAAGGGAGATGGAGATTATGAATTAGTCCCTGAAATCATATTTGATGAATCTCTTCGGGCAAGAATAAAGAAGAGTGAAGATGAGCTCGTGGCTGAGAAGAGATGTGTTGCTCACCTGATTGGCGAGGGAGATGGCTATTGTGATTTACCTGGTGACACAACCCTCCCAGGGGAGCAATAG___GCAGTCGTTGGTTGATGGTTAATGATGTTTGCTTCTGAGGAAGCAGAAGAGTCACCTCATTTGATAGTGAATTGAGTATAGGATTTTTTTTCTGTGATCTTTCCTGGAGGAAATCGCATGTATTTTTAATATCTGAATGAAACTTTGTCCAACTCAATGGGAAGTAAGACAAAGAAAGACAAGGGAGCAATGAAATAACAATAGCATAGGTTCATCGTTTACCTCACCTTTACTCACCCTGTGTTAAGAGTAAATTCTCTTTACAACAATTTATTTTTATTATTT

Fln Alignment:

Contig10448___MAMADISFTGTSQLLQRKTNVSLYRLNSSFLPQKPAKFSFNVNTEKCFPSMKVVCSVXXXXXXXXXXXXXXXXXXDGKRTDCFGIFCLTYDLKEEEKQKSWKKLIKVAVSGAAGMISNHLLFMIASGEAFGQDQPIALQLLGSERSFTALEGVAMELEDSLYPLLREVSIGVDPYEVFRDAEWALLIGAKPRGPGMERADLLDINGQIFAAQGKALNDVASPNVKVLVVGNPCNTNALICLKNAPKIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIHGRPVKEIITDIKWLENEFTEKVQKRGGVLIKKWGRSSAASTAVSIVDAIKSLTIPTPEGDWFSSGVYTTGNPYGIADDIVFSMPCRSKGDGDYELVPEIIFDESLRARIKKSEDELVAEKRCVAHLIGEGDGYCDLPGDTTLPGEQ
A9NX63_______________MAMADISFSGTCQLFQRRTNVSLHNLNSSFLPQKPVKFSSNFNTEKCLPSMKVVCSVAPSQTQTPTPAPTTTITADGKRTDCYGIFCLTYDLKEEEKQKSWKKLIKVAVSGAAGMISNHLLFMIASGEAFGQDQPIALQLLGSERSFAALEGVAMELEDSLYPLLREVSIGVDPYEVFRDVEWALLIGAKPRGPGMERADLLDINGQIFAAQGKALDAVASPNVKVLVVGNPCNTNALICLKNAPKIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKILGRPVKEIITDIKWLEVEFTEMVQKRGGVLIKKWGRSSAASTAVSIVDAIKSLTIPTPEGDWFSSGVYTTGNPYGIADDLIFSMPCRSKGDGDYELAPDILLDDSLRARIKKSEAELLAEKRCVAHLIGEGDGYCDLPGDTTLPGEQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1783	25	75			0.996473
1784		25	75		0.996473
1786	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain