SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10438

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9S1L4_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Neutral amino acid transport protein	-	-	3.3e-18	-

Source	Gene names
Sma3	AOC4; AT1G31830; At1g31830; At3g13620; At3g19553; At5g05630; At5g05630/MJJ3_2; CHLREDRAFT_179587; F5M6.16; F5M6.17; GSVIVT00001446001; GSVIVT00003183001; GSVIVT00003185001; GSVIVT00003187001; GSVIVT00024769001; GSVIVT00024770001; GSVIVT00036168001; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	adenosylhomocysteinase activity	GO:0004013	Molecular Function	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31830.1	Amino acid permease family protein chr1:11418875-11420362 REVERSE LENGTH=495	63%
RefSeq	Arabidopsis thaliana	NP_973947.1	amino acid permease-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304384.1	neutral amino acid transport protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 314 - 502

Fln protein: FSLLPFCMMGILAIPRLEPSRWLEIDMKNIDWNVYLNTLFWNLNYWDSISTLAGEVEDPKRTLPKSLFCAVMLVVGTYFIPLLSATGSIELVRSQWNAGYFADVAKILGGVWLQWWMEAASALSNMGMFEAEMSSDSFQLLGMAERGMLPSVFAVRSKYGTPLLGILCSASGVLVLSSMTFQEIVAAENYLYCFGMFAEFAAFIWLRFKEPAISRPYKVPFGTHGVVLLCLPPSLLLILVVVVASRKVMVVSITAVLIGFLLYPCIEFMKKQKWARFVNSLEVPDLPIHRDLKSDRLEDANDANIGLLSAETT*

Protein Length: 315

Fln nts: TCTTCTCTTTACTTCCTTTCTGCATGATGGGTATTCTGGCAATACCGAGGTTGGAACCTTCAAGATGGCTGGAGATCGATATGAAAAATATTGACTGGAATGTTTATCTGAATACACTTTTCTGGAATCTGAATTACTGGGACTCCATAAGTACATTGGCAGGAGAAGTCGAGGATCCAAAGAGAACGCTTCCTAAATCTCTTTTTTGCGCTGTGATGCTTGTGGTTGGTACTTATTTTATTCCCCTGTTATCAGCGACCGGCTCTATAGAGCTGGTTAGAAGTCAATGGAATGCTGGCTATTTTGCAGACGTCGCAAAAATTTTAGGTGGCGTCTGGTTGCAGTGGTGGATGGAAGCAGCTTCAGCTCTTTCAAACATGGGAATGTTTGAGGCGGAGATGAGCAGCGACTCTTTCCAACTTCTAGGAATGGCAGAGAGGGGTATGTTGCCATCAGTATTTGCAGTGAGGTCAAAATACGGGACTCCTCTTTTGGGCATTTTATGTTCTGCCTCAGGAGTGCTTGTCTTATCTTCGATGACTTTCCAAGAGATTGTAGCTGCAGAAAATTATCTGTATTGCTTTGGCATGTTTGCTGAGTTTGCAGCCTTTATCTGGCTAAGATTCAAGGAACCAGCCATCTCTCGCCCCTACAAAGTTCCATTTGGAACTCATGGAGTTGTTTTGCTTTGCCTACCTCCTTCATTGCTGTTGATTTTAGTGGTGGTAGTAGCCTCACGTAAAGTTATGGTTGTCAGCATCACTGCTGTTTTGATTGGGTTTCTTCTGTATCCATGTATTGAGTTTATGAAAAAACAAAAATGGGCAAGGTTTGTCAATAGTTTAGAGGTTCCAGATCTGCCAATTCACAGAGATTTAAAATCAGATCGCTTGGAGGATGCTAATGATGCAAATATAGGGTTGCTTTCAGCTGAAACTACATAA___ACTACAATCCATTTGTGAATCCTAGGCGGTTTGCGAGCAAGAGCAATTTGATTCTGCTTCAGAAAGTTAGAAAAGGCCAGAGGTCAGCGCTTGCATGGAAGTTACCAAATCTCCCTGTAAAAAAGTTCGGGGAGGCTTAGTAGACCTAACATAATGATGCACACTCCTGCATGGTCTGGAGAAATCATACTCATATTGATGAAGGTGAATAAAGGGCATTAAGCCAGGGTGAAACTTGTTATTTTGCATAAATAACATTCTCCTTCAAATTATGAGATAAGGCCTACAATTATTGAAAGCTTTTTCATTCATGAAGCGGAATTCAAACAACAGGTATTTCTGGCCTAAATGCACGTGACATATACTTATGATGGAATAGATGTTAACATTTTATGCTCTTTTCCCCCTGTTTTAACCTCTTTGAACCTGCAGAGTACTTTTTGGGGTCTGTATGATTATACGAATATAAC

Fln Alignment:

Contig10438___FSLLPFCMMGILAIPRLEPSRWLEIDMKNIDWNVYLNTLFWNLNYWDSISTLAGEVEDPKRTLPKSLFCAVMLVVGTYFIPLLSATGSIELVRSQWNAGYFADVAKILGGVWLQWWMEAASALSNMGMFEAEMSSDSFQLLGMAERGMLPSVFAVRSKYGTPLLGILCSASGVLVLSSMTFQEIVAAENYLYCFGMFAEFAAFIWLRFKEPAISRPYKVPFGTHGXXXXXXXXXXXXXXXXXXXXXXXXXXSITAVLIGFLLYPCIEFMKKQKWARFVNSLEVPDLPIHRDLKSDRLEDANDANIGLLS
B8LPK8_______________FSLLPFAVMGVLSIPHLRPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEVESPSKTFPKALMLAVILVVCSYLIPLLAGTGAVDLSTSDWSDGYFAEVAMLIGGAWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPEIFSHRSKHGTPTFSIICSATGVIVLSWMSFQEILEFLNFLYCIGMLLEFAAFVWLRIKHPDLQRPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTLIVSSTVVIVGFLLYPCIGYMKARECLKFVKSDKEVIVP-----TSEGHEQTDEDAIGLLT

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
942	80	20			0.995493
943	20			80	0.995493
944	60			40	1.0
945	60		40		1.0
946	60		20	20	0.99255
949	80			20	0.995493
952	80	20			0.995493
1247		85		14	0.993533
1304			88	11	0.923564
1325	87			12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain