SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10402

Length: 1760 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10402

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Musa balbisiana]	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	ATP binding protein, putative	-	-	4.927e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.182e-08	-
Sma3		EC:2.7.11.3-	-	4.222e-09	-

Source	Gene names
Sma3	AT3G24550; AT4g01330; AT4g02010; AT4g32710; AT4g34440; A_IG002N01.22; At1g01540; At1g20650; At1g26150; At1g49270; At1g52290; At1g55200; At1g68690; At1g70450; At1g70460; At2g18470; At2g20300; At2g42960; At3g13690; At3g59110; At4g02010; At4g34440; At4g34440

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G38560.1	Protein kinase superfamily protein chr5:15439844-15443007 FORWARD LENGTH=681	73%
RefSeq	Arabidopsis thaliana	NP_198672.1	protein kinase family protein [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002315972.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: your sequence is shorter than subject: 407 - 656

Fln protein: QNVLGEGGFGCVYKGYLPDGQVVAVKQLKVGSGQGEREFRAEVEIISRVHHRHLVSLVGYCIADSQRLLVYDYVPNGTLEYHLHGGQRPVMDWATRMRIAVGAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVVRALESNAAIGDLNNGVKPGESVMYNSAQYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEAKQTRHWKSELAMSCACGGESPSSVESETRPINRSHIYRDEMNEEKSSGEAPIPINCKSLTGR*

Protein Length: 408

Fln nts: TACAGAATGTTCTAGGGGAGGGTGGTTTTGGATGTGTATACAAAGGATACCTACCAGATGGGCAAGTGGTGGCAGTTAAACAGCTCAAGGTGGGTAGTGGGCAAGGAGAACGAGAATTCCGTGCTGAGGTAGAGATTATTAGTAGGGTGCACCATAGACATCTGGTTTCTCTGGTGGGTTACTGCATTGCTGACAGTCAGCGATTGCTTGTATACGACTACGTCCCAAATGGCACCCTTGAATACCATCTGCATGGGGGCCAAAGACCTGTGATGGATTGGGCTACCAGGATGAGAATTGCTGTTGGAGCAGCTCGTGGAATAGCATATCTACATGAAGATTGTCATCCTAGAATAATTCACAGGGATATCAAGGGATCGAACATTCTATTGGACGACAGATTTGAAGCACAGGTGTCAGATTTTGGACTTGCAAAACTAGCATCAGATACCAATACGCATGTGACAACCCGTGTCATGGGAACCTTTGGGTATATGGCACCGGAATATGCATCAAGTGGAAAGCTCACTGTCAGGTCTGATGTATTCTCATTTGGGGTTGTGTTATTGGAGCTTGTGACTGGGCGGAAGCCTGTTGATGTGTCACAGCCTCTTGGTGATGAGAGCTTGGTTGAATGGGCTCGACCTTTACTTAACCGTGCCCTTGAAGAGGGGAACTTTGAAGAATTAGCTGATCCAAGGCTTGAGAAAAACTTTGATGAGGGTGAAATGTTTCGGATGGTTGAAGCTGCAGCAGCATGTGTACGTCACTCAGCTCGTAGAAGGCCAGGGATGGGGCAGGTGGTAAGGGCATTGGAAAGTAATGCTGCAATTGGAGATCTGAACAATGGAGTCAAACCTGGTGAGAGTGTAATGTATAATTCTGCACAGTACTCTGCAGATATCAGGAGATTTCAGAGGATGGCATTTGGCAGCCATGACAATGCTAGTGATTTCAGTGAAGTCACTAGTGAAAACGACATGAATCTCTCTGCATATAGCAATGAGTTTCGCAGGAGCAAGGAATTAGAAGCTAAACAAACCAGGCACTGGAAATCAGAGTTAGCCATGTCATGTGCTTGTGGTGGTGAGTCCCCAAGCAGTGTTGAATCAGAGACACGTCCAATAAACAGGTCACATATTTACAGGGATGAAATGAATGAGGAGAAAAGTTCTGGTGAGGCTCCAATTCCAATCAATTGTAAATCTCTTACAGGACGTTAG___CTAACCTCTGAGAGAAATTTCTGCCCCAAATGAAAGAATGTATGGGCGGCTTCTATCAATGTCGGATCAGTAGGCCCACTCTACCTGAATTACTCACACGAGGTTGTCAAACAATTGGATTCTCTGAAGTTGGGCAGGCGACTAAATCCAATGAAGGAAGCTCTGAGCCTTGACAAGTTCTTGGTGGGTATGAATGTTTGAAAATGGAAGTGTGAAGGTAAAAGCTTGAATTACATTTTTGCTGGAATGCCCGACGTCCGAGTAGATTCAACAATAACTGGGTGACTTGTATTCCATGTCACAGTGTACACAACAAAAAATCTCGCTCTTTTGTATTCTTTTGTTTTGATTTGTTTTTTCTCTTTTACATAATTTTTTTACCTCTTCCATAGGATACAATATGATAGCTGATCTTGTTATTATTCAATTGTATATGCCATACTGGCATAGCGACAAGATTTGCCTGGCAATTTATTCTTTTGAGTATAGTCATCAACATTTTGCAGCCTTTTCTCTCCAAAAAAAAAAAAAAAAAAA

Fln Alignment:

Contig10402___NVLGEGGFGCVYKGYLPDGQVVAVKQLKVGSGQGEREFRAEVEIISRVHHRHLVSLVGYCIADSQRLLVYDYVPNGTLEYHLHGGQRPVMDWATRMRIAVGAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVVRALESNAAIGDLNNGVKPGESVMYNSA--------QYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEA
C0PRI9_______________NLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVDTTPSFAEDSLVDWARPLLARAMEDGNLDALVDPRIQNNYNLNEMMRVVACAASSVRHSARRRPRMGQIVRVLEGDVSLDDLNEGVRPGHSTHYGSVGSSDYDTNQYSEDMKKFRKMALGSQEHGSEYSDPTSEYGLNQSVSSSEYLQSKEVES

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
28			33	66	0.997452
141	85	14			0.993533
144	85	14			0.993533
146			85	14	0.993533
148	14			85	0.993533
149		14	85		0.993533
151	85			14	0.993533
152		85		14	0.993533
153		85	14		0.993533
154	85		14		0.993533
155		14		85	0.993533
156	85			14	0.993533
158	85			14	0.993533
301	10	90			0.90298
305			10	90	0.90298
619	87		12		0.992554
621		11	88		0.923564
623	11		88		0.923564
626		88		11	0.923564
628		11		88	0.923564
629		11	88		0.923564
630		11	88		0.923564
633			88	11	0.923564
634	88	11			0.923564
636	11			88	0.923564
1170	85			14	0.993533
1172			14	85	0.993533
1173			14	85	0.993533
1548		33		66	0.997452
1718	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain