SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10392

Length: 2492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10392
AGAGGACCGAGCGGGAATTGTCAGTGAATTGGAATTTTCTTTCTGTACGGGAATTTAGTGCAATGGGAAACCAATGCGCTTCGGACCATGCAGAATTGAGTGCTCATGTGGCCGGCAATCGGGACATTGCGCAGGTTTTGCTTAGCCCTCGGGTATCGGGCACCGTCAGTCCCAGGAACAGGTTTTTTGGCTCCTCGAAGCGTGCGGGCGATGGGGATTCGTTTGCCTCGTCTGATTATTTGGGCAGTGTGGGGGATGGAATATGCGATGGATCCGTGGACCGGGGAAAGAGGCCCTGGATTCTTGAGGCGCTCCTGTACAGTGTGGTGATGAATTTTGTTGCGAGGTATGGGGTGGTGGGGATGAAGAAGATTGGGGACAGAAAATTTGTAAGACAGTCTCTTTTATGTGTGCCATTGGTGTTGGTTACGCTATTGGTTTTGGTGAAGATAACTTCTGTTGCGTGGATCAGTTTTCAATCTGAACAGAGTTTTCCGCACGACACATTTCTGAAACCTGTTGGGGACTCTTCTTTGAATCTACTATTAACAGAGAATTCTCAACTTCTTGCAACTAAAGTTAAATCTTCTAATCTGCGAGAGGTGGATTATTTTTCTAAAACCTTAAATGATAATCATTCAAGTAATGATCTTTGGTCTAAGCCAGATAGTAAACACTTCTTCCAATGCATAGATCGGCCTCGGCATTATAAGCGCCCACGACAGCGACCCAATGGTTATCTTGTTGTGAATGCTAATGGTGGATTGAATCAGATGCGTACAGGGATCTGTGATATGGTTGCCATTGCAAGGATTATGAATGCTGTGCTTGTCATACCAACCTTAGATCACAGTTCTTTCTGGGATGATCCAAGTGAGTTTAAAGATATATTTGATGTTCACCACTTTGTTGACACACTGAAGGAAGATGTGCACATTATTGATTCCTTACCAGCATCCTTAAAAGATGTCGAGTCTTTGAAGAAGGCTCCTGTTTCGTGGTCAAAGGCGTCCTTCTACAAGGATGAGATGCTTCCTCTGCTGAAACAACATAAGGTGTTGTATTTTACACATACTGATGCCCGTCTTGCAAATAATGACCTTCCTGATTCAATTCAGAAACTCCGCTGCCGTGCAAAATTACCAGGCACTGAAGTTTACTAAGCCAATTGAGCGACTATCTCAAACTCTTCTAAGTAGAATACGGGATAAGTCACCATACATTGCCCTCCATCTCAGGTATGAGAAAGATATGCTAGCTTTTACGGGATGTACACATGGATTGTCATCAGAGGAAGGTGAGGAACTCAGGCAGATGCGAATTAATGTTGAACACTGGAAGGAAAAAGATATTGATGGAGAAGAAAGGCGCATACAGGGAAGCTGCCCTTTGACTCCTCATGAGACTGGCCTTTTTTTGAAGGCTTTGGGCTATCCCTCATCGACCAAAATATTCATAGTAGCAGGGAAGCTTTATGGGAATGGAAGTTTAGAGTCCCTTCAGAAGCATTTTCCAAATGTATACACTCATTTAAGTTTGACCACTGAAGAAGAACTTGAGCCATTGAAGGATTATCAAAACAGATTAGCAGGTTTGGATTACATAATGGCGTTAGAAAGTGATGTTTTTGTTTACACCTATGATGGAAATATGGCCAAGGCTGTTCAGGGCCACAGACGATTTGAAGGATTCAGGAAGACAATCAGTCCTGACAGACAAACTCTCGTTAGGTTGATAGATGAGTATGAATCAGAAAGCATTTCATGGGAAATATTTCAACAACAGGTGACAGAAATCCAATGCCCACAGAACAGGAGCTCCAGCAAGTCGACAACCTGGAGAATTTCCTAAAACTGAGGAGTACTTCTATGCAAATCCCTTTCCGGGTTGCATTTGTGAAAAAAAACAATTGCCTAGGAGAGTGTTAAAGGGAAATTTATGAGTATCTTATTGGTTTAGGTAAATCTGTGCGTTTTAATTATTCCTCAATGAATTCCTCTTTACACTTAAATGAATTTGCAGTGTAACTTGGAATTCTTCGCAATATAGTCCAGGAATCATTCTTTTTTCCCGTGACCAATAAGATGCAGTCTGTGTTCCATCTATGCAGACAGAAATTTAACTAATTGTGCCAAAATTCACGGTGTACTTTCATATGCATTCCAAAGGCTTGGTGGCAATCAGGGAAGATTTTTGATGCAGCAGTATATAAATGTTTTTCACTGCTGCCTACTCAAATGAAGGCGTGTTCTTGTTGATATGCCACTTCCCTTTGCTTTGCTATGACAATCCATTGATGTAAATAGACATGATTCATGAGGCAGTATTGTAATTCTGATACTGCTTCCCTGATCTCTATGAAAATATCTGGTTCCTTTGTTCTTTCACCTAAATTGAATGGCAATCTGTATGTGTGCTTATTCTATATATTGTTTTGCCTCTGACATTGGGGCTTTATGGCTTATACTGATATAACCAGTGCTTGCTGGTAC

Ace file of the UniGene sp_v3.0_unigene10392 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-fucosyltransferase-like protein [Arabidopsis thaliana] gb\|AAK25969.1\|AF360259_1 putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb\|AAN71964.1\| putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb\|AEC09474.1\| O-fuc	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative auxin-independent growth promoter	-	-	1.356e-22	-

Source	Gene names
Sma3	AT4g16650; At1g14020; At1g76270; At2g03280; At2g37980; At3g02250; At3g54100; At4g16650; At5g01100; At5g15740; At5g35570; B1121A12.18; F12K8.19; F14F8_120; F14P3.10; F15M4.23; F24B22.60; F7A19.11; F7J8_80; GSVIVT00005936001; GSVIVT00015184001; GSVIVT000155

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37980.1	O-fucosyltransferase family protein chr2:15894162-15897452 REVERSE LENGTH=638	63%
RefSeq	Arabidopsis thaliana	NP_181334.1	O-fucosyltransferase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002326282.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: Separated hits, possible frame ERROR between 1133 and 1138, and overlapping frame ERROR between 1788 and 1745,

Fln protein: MGNQCASDHAELSAHVAGNRDIAQVLLSPRVSGTVSPRNRFFGSSKRAGDGDSFASSDYLGSVGDGICDGSVDRGKRPWILEALLYSVVMNFVARYGVVGMKKIGDRKFVRQSLLCVPLVLVTLLVLVKITSVAWISFQSEQSFPHDTFLKPVGDSSLNLLLTENSQLLATKVKSSNLREVDYFSKTLNDNHSSNDLWSKPDSKHFFQCIDRPRHYKRPRQRPNGYLVVNANGGLNQMRTGICDMVAIARIMNAVLVIPTLDHSSFWDDPSEFKDIFDVHHFVDTLKEDVHIIDSLPASLKDVESLKKAPVSWSKASFYKDEMLPLLKQHKVLYFTHTDARLANNDLPDSIQKLRCxxxNYQALKFTKPIERLSQTLLSRIRDKSPYIALHLRYEKDMLAFTGCTHGLSSEEGEELRQMRINVEHWKEKDIDGEERRIQGSCPLTPHETGLFLKALGYPSSTKIFIVAGKLYGNGSLESLQKHFPNVYTHLSLTTEEELEPLKDYQNRLAGLDYIMALESDVFVYTYDGNMAKAVQGHRRFEGFRKTISPDRQTLVRLIDxxxxxxxxxxxxxxxxxQKSNAHRTGAPASRQPGEFPKTEEYFYANPFPGCICEKKQLPRRVLKGNL*

Protein Length: 629

Fln nts: AGAGGACCGAGCGGGAATTGTCAGTGAATTGGAATTTTCTTTCTGTACGGGAATTTAGTGCA_-_ATGGGAAACCAATGCGCTTCGGACCATGCAGAATTGAGTGCTCATGTGGCCGGCAATCGGGACATTGCGCAGGTTTTGCTTAGCCCTCGGGTATCGGGCACCGTCAGTCCCAGGAACAGGTTTTTTGGCTCCTCGAAGCGTGCGGGCGATGGGGATTCGTTTGCCTCGTCTGATTATTTGGGCAGTGTGGGGGATGGAATATGCGATGGATCCGTGGACCGGGGAAAGAGGCCCTGGATTCTTGAGGCGCTCCTGTACAGTGTGGTGATGAATTTTGTTGCGAGGTATGGGGTGGTGGGGATGAAGAAGATTGGGGACAGAAAATTTGTAAGACAGTCTCTTTTATGTGTGCCATTGGTGTTGGTTACGCTATTGGTTTTGGTGAAGATAACTTCTGTTGCGTGGATCAGTTTTCAATCTGAACAGAGTTTTCCGCACGACACATTTCTGAAACCTGTTGGGGACTCTTCTTTGAATCTACTATTAACAGAGAATTCTCAACTTCTTGCAACTAAAGTTAAATCTTCTAATCTGCGAGAGGTGGATTATTTTTCTAAAACCTTAAATGATAATCATTCAAGTAATGATCTTTGGTCTAAGCCAGATAGTAAACACTTCTTCCAATGCATAGATCGGCCTCGGCATTATAAGCGCCCACGACAGCGACCCAATGGTTATCTTGTTGTGAATGCTAATGGTGGATTGAATCAGATGCGTACAGGGATCTGTGATATGGTTGCCATTGCAAGGATTATGAATGCTGTGCTTGTCATACCAACCTTAGATCACAGTTCTTTCTGGGATGATCCAAGTGAGTTTAAAGATATATTTGATGTTCACCACTTTGTTGACACACTGAAGGAAGATGTGCACATTATTGATTCCTTACCAGCATCCTTAAAAGATGTCGAGTCTTTGAAGAAGGCTCCTGTTTCGTGGTCAAAGGCGTCCTTCTACAAGGATGAGATGCTTCCTCTGCTGAAACAACATAAGGTGTTGTATTTTACACATACTGATGCCCGTCTTGCAAATAATGACCTTCCTGATTCAATTCAGAAACTCCGCTGCCGxxxxxxAAATTACCAGGCACTGAAGTTTACTAAGCCAATTGAGCGACTATCTCAAACTCTTCTAAGTAGAATACGGGATAAGTCACCATACATTGCCCTCCATCTCAGGTATGAGAAAGATATGCTAGCTTTTACGGGATGTACACATGGATTGTCATCAGAGGAAGGTGAGGAACTCAGGCAGATGCGAATTAATGTTGAACACTGGAAGGAAAAAGATATTGATGGAGAAGAAAGGCGCATACAGGGAAGCTGCCCTTTGACTCCTCATGAGACTGGCCTTTTTTTGAAGGCTTTGGGCTATCCCTCATCGACCAAAATATTCATAGTAGCAGGGAAGCTTTATGGGAATGGAAGTTTAGAGTCCCTTCAGAAGCATTTTCCAAATGTATACACTCATTTAAGTTTGACCACTGAAGAAGAACTTGAGCCATTGAAGGATTATCAAAACAGATTAGCAGGTTTGGATTACATAATGGCGTTAGAAAGTGATGTTTTTGTTTACACCTATGATGGAAATATGGCCAAGGCTGTTCAGGGCCACAGACGATTTGAAGGATTCAGGAAGACAATCAGTCCTGACAGACAAACTCTCGTTAGGTTGATAGATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACAGAAATCCAATGCCCACAGAACAGGAGCTCCAGCAAGTCGACAACCTGGAGAATTTCCTAAAACTGAGGAGTACTTCTATGCAAATCCCTTTCCGGGTTGCATTTGTGAAAAAAAACAATTGCCTAGGAGAGTGTTAAAGGGAAATTTATGA___GTATCTTATTGGTTTAGGTAAATCTGTGCGTTTTAATTATTCCTCAATGAATTCCTCTTTACACTTAAATGAATTTGCAGTGTAACTTGGAATTCTTCGCAATATAGTCCAGGAATCATTCTTTTTTCCCGTGACCAATAAGATGCAGTCTGTGTTCCATCTATGCAGACAGAAATTTAACTAATTGTGCCAAAATTCACGGTGTACTTTCATATGCATTCCAAAGGCTTGGTGGCAATCAGGGAAGATTTTTGATGCAGCAGTATATAAATGTTTTTCACTGCTGCCTACTCAAATGAAGGCGTGTTCTTGTTGATATGCCACTTCCCTTTGCTTTGCTATGACAATCCATTGATGTAAATAGACATGATTCATGAGGCAGTATTGTAATTCTGATACTGCTTCCCTGATCTCTATGAAAATATCTGGTTCCTTTGTTCTTTCACCTAAATTGAATGGCAATCTGTATGTGTGCTTATTCTATATATTGTTTTGCCTCTGACATTGGGGCTTTATGGCTTATACTGATATAACCAGTGCTTGCTGGTAC

Fln Alignment:

Contig10392___HSSNDLWSKPDSKHFFQCIDRPRHYKRPRQRPNGYLVVNANGGLNQMRTGICDMVAIARIMNAVLVIPTLDHSSFWDDPSEFKDIFDVHHFVDTLKEDVHIIDSLPASLKDVESLKKAPVSWSKASFYKDEMLPLLKQHKVLYFTHTDARLANNDLPDSIQKLRCRxxNYQALKFTKPIERLSQTLLSRIRDKS-PYIALHLRYEKDMLAFTGCTHGLSSEEGEELRQMRINVEHWKEKDIDGEERRIQGSCPLTPHETGLFLKALGYPSSTKIFIVAGKLYGNGSLESLQKHFPNVYXXXXXXXXXXXXXLKDYQNRLAGLDYIMALESDVFVYTYDGNMAKAVQGHRRFEGFRKTISPDRQTLVRLIDExxxxxxxxxxxxxxxQKSNAHRTGAPASRQPGEFPKTEEYFYANPFPGCICEKKQLPRRVLK
B8LQ81_______________YESPEIWFKPKGDDLEQCIERSKSYKKLEGGTNGFLLVHANGGLNQMRTGICDMVAVARIMNATLVLPSLDHSSFWTDPSDFEDIFDWHHFTKTLREDVRIVKSLPASYAKIEPLQKAPISWSKHTYYKDEMLPLLKKQKVIHFTHTDSRLANNGLPNSIQKLRCRxxNYQALRYTQSIEELGKKLVARMRKNGKPYIALHLRYEKDMLAFTGCAHNLTLGEAEELREMRYNVKHWKEKDIDAEEKRKQGGCPLTPRETALLLKALGYLPTTNIYIAAGEIYGNGSMRALQNEFPNVFSHSTLATEEELEPFKNYQNRLAALDYILALESDVFLYTYDGNMAKAVQGHRRFEGFRKTINPDRENLIKLIDExxxxxxxxxxxxxxxKATHSNRVGAPYLREAGDFPRLEENFYANPFPGCICERHKKNRRLLK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1198		71	28	1.0
1362		33	66	0.997452
1363	33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain