SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10357

Length: 1440 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10357 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RR32_RICCO	-	-	4.0e-18	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	BHLH transcription factor	-	-	3.807e-15	-

Source	Gene names
Sma3	AP22.3; AT4G02590; At1g03040; At1g26260; At1g59640; At2g18300; At2g24260; At3g07340; At3g23690; At4g02590; At4g30980; At4g36540; At5g48560; At5g50915; At5g58010; BEE2; BHLH137; BHLH31; BHLH58; BHLH59; BHLH62; BHLH64; BHLH66; BHLH69; BHLH7; BHLH76; BHLH77;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	petal morphogenesis	GO:0048446	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3		IPR001092	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58010.1	LRL3 LJRHL1-like 3 chr5:23483670-23484889 REVERSE LENGTH=297	2.0e-18	96%
RefSeq	Arabidopsis thaliana	NP_200609.1	transcription factor bHLH82 [Arabidopsis thaliana]	2.0e-18	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSU4

Fln msg: Distance to subject end: 118 aas,

Fln protein: MEDFLDQFLSSSSSWMDMSGVQASGMAGDSMGPFQETLKHATTPSDALHRLVDSNTVAGTPVSLQLNTSVPVTRQGSTSQFLTAVVGPSRTAASLTELASAGSSSSEASGFQQALADPHPPGPVWSESYTVSAALPAAAGQGKVEGFTLKEEIGQGDGHILGKRSHSEDKMLARENRSGETEHDDLQGTLLTSYTGPQGGQTVLPRTPGAQSHQQNLSTQTIQSGEGTSLQQYGNHSAVSQLQSGAGGGNAANGAARPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMS

Protein Length: 326

Fln nts: CAATGGGTTTCAAACTTACAAGTGTTTTTTCAAACCCTAACGTTTGAATTCGTTCATGTCGACCAAACTCAGGCTCCTCCAGCACGCGTTTGCGCTTTTCCGTTTCCAGGCAGCCAGAGAAAATTTCGACCAGAAAAGAGCAAGATGAAGTGCTTTGGCTAGTACCGGGACATTAAAATTATCAAATATTGCTTGTAAGATATATGATTTAGCTAGCACACATAAACTTTTTAATTTTCTGTTTTTCACTGGTTATAAATAACCAGTAAAGATTGGTATTGCTGATTTCTTGTTACTGGATATTTTTTGATTACTATATCATGTCATGTCAGTATTAGCAATATGGCATTACCAATTCCATCATGGAAGTAAGATGGTATTGTTGTGTAGTTGGAAGTGAGAGAGTATTTTAATAGCATTGTCTTGTCACATCCTCCTGGCAAGTTGACTCCTTGAAATTTGTC_-_ATGGAGGACTTTCTTGATCAATTCTTATCATCATCATCATCATGGATGGATATGAGCGGAGTACAAGCCAGTGGCATGGCTGGTGACTCAATGGGACCATTTCAAGAGACCTTAAAACATGCAACAACACCTAGTGACGCACTGCATAGACTAGTTGATAGCAACACTGTTGCAGGTACTCCTGTTTCTTTGCAATTAAACACATCTGTCCCAGTGACACGACAGGGAAGCACATCCCAATTTCTGACTGCAGTTGTAGGTCCATCAAGAACAGCTGCTTCACTAACTGAATTAGCTTCAGCTGGAAGCAGCAGCAGTGAAGCATCTGGCTTTCAGCAAGCTCTGGCTGATCCTCATCCACCAGGTCCAGTTTGGAGTGAATCCTACACAGTTTCTGCAGCTCTTCCTGCAGCAGCTGGGCAAGGCAAGGTAGAAGGATTTACCTTGAAAGAAGAAATTGGTCAAGGTGACGGGCACATTTTGGGCAAAAGGTCTCACTCTGAAGACAAAATGCTAGCCAGAGAAAATAGATCTGGAGAGACTGAGCATGATGATCTTCAAGGGACCCTTTTGACATCTTATACAGGACCACAAGGAGGTCAGACAGTGCTACCTAGAACTCCAGGGGCACAATCCCATCAACAGAATCTTAGCACACAAACTATACAATCAGGTGAAGGAACTTCTCTACAGCAGTATGGAAACCATTCAGCTGTTTCTCAGCTGCAGTCTGGGGCTGGTGGTGGCAATGCTGCAAATGGAGCTGCAAGGCCACGTGTCAGGGCACGTCGAGGTCAAGCTACCGATCCACACAGTATTGCTGAGCGGCTTCGCAGGGAGAGGATTGCAGAAAGGATGAAATCTTTACAAGAACTTGTTCCAAACTCTAACAAGACAGACAAAGCATCCATGCTTGATGAGATCATAGAGTATGTCAAGTTTTTGCAGCTGCAAGTGAAGGTTTTGAGCATGAGTA

Fln Alignment:

Contig10357___QATDPHSXXXXXXXXXXXXRMKSLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLS
A9NSU4_______________RAAEVHNLSEKRRRNRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKKLQLQVQMLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1222			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
934	950	ATG ATG ATG ATG ATG AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain