SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10353

Length: 1766 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10353

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein phosphatase 2C 76 [Arabidopsis thaliana] sp\|Q94AT1.1\|P2C76_ARATH RecName: Full=Probable protein phosphatase 2C 76; Short=AtPP2C76 gb\|AAK76493.1\| putative protein phosphatase 2C [Arabidopsis thaliana] gb\|AAM14299.1\| putative phosphatase 2C	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Protein phosphatase 2c, putative	-	-	3.52e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	24K23.16; At1g22280; At1g34750; At1g43900; At2g20630; At2g34740; At2g40180; At3g15260; At4g28400; At4g31750; At5g10740; At5g24940; At5g53140; CHLREDRAFT_95558; F20O9.80; F21H2.4; F23N11.5; F28H19.16; F28M20.60; F6A4.150; F9C16.6; GSVIVT00000234001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53140.1	Protein phosphatase 2C family protein chr5:21549228-21552132 FORWARD LENGTH=420	65%
RefSeq	Arabidopsis thaliana	NP_568786.1	putative protein phosphatase 2C 76 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002321445.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX2

Fln msg:

Fln protein: MNGAEDVVDDVNVMSVEDALNIITTGSPSGIITGVEDVFSDKDYVDDISLVSGGSESEDKRCSYGYASCQGRRATMEDFYDAKISKIDGHMVGFFGVFDGHGGSRAAQYLKQHLFDNLASHPKFMTDTKLAITEIYQQTDAEFLKAASSIYRDDGSTASTAVLVGHNLYVANVGDSRAVMSKAGEAIPLSEDHKPNRVDERERIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKQYVVAEPEIQEAIIDDDFELLVIASDGLWDVITNEDAIALVKAIEDPEVAAKKLIETAYAKGSADNITSVVVRFHHGKHDLP*

Protein Length: 319

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATTTTGGTTTGAAGTGAGCGAGTGGCACGGCAGAGACGATGAACAGAGCACAATGAGATGCGGATGCCCTGGAATAATACATAGACATTGTATATACAACACTTGAGAGCTGAAGTTGGTACTGGCGGTGATTAATTTCAATCTGTTTTGCGTCTTTTCAAAGGGCCTGGAAACCTCTATATTGGTTTTTTTCTAAGGGGTCAATTACCTGCAGATTATATTAAATTAAATTTGCGGCGTTGTAGTTGATTTGGTGGTCTTTTGAGGAAAAGCGGTCGAGTAGGCGCATTTTGTCCTCTGGAATGGTTAGTGCAGTCGATTGAAGAAGAATAACTGGGCACTAACAAGTCCTTTCTTCAGTGGGGTTTAAGGAAAGTTATATCTAATATATTTGTTCCAAAAGGGTTATAGGAGCTGTTGAATTAAGATCGAATTTTGGTTTAAGCTAACGGTAGCAGCGGCACG_-_ATGAACGGCGCTGAGGATGTTGTGGATGACGTCAATGTCATGTCAGTTGAAGATGCACTCAATATCATTACTACTGGATCGCCGAGTGGCATAATTACTGGCGTGGAAGATGTTTTCTCCGACAAAGATTATGTGGACGACATTAGCCTGGTCAGCGGTGGATCAGAAAGTGAAGATAAGCGTTGTAGCTATGGATATGCTAGCTGTCAAGGGAGAAGAGCAACAATGGAGGATTTTTACGATGCAAAAATATCAAAGATTGATGGTCACATGGTTGGCTTTTTTGGGGTTTTTGATGGCCATGGTGGATCTCGCGCTGCTCAGTATCTAAAGCAACATCTTTTTGATAACTTGGCAAGCCACCCCAAATTTATGACGGACACCAAGTTGGCCATAACTGAAATCTATCAGCAAACTGATGCTGAGTTCTTGAAGGCTGCAAGTAGTATTTATAGAGATGATGGGTCAACAGCATCGACAGCTGTGCTAGTTGGTCACAATCTGTATGTTGCCAATGTTGGAGATTCTCGAGCAGTTATGTCAAAGGCAGGCGAAGCTATACCTCTGTCTGAAGATCACAAGCCTAACAGGGTTGATGAACGGGAGCGTATTGAGCAAGCCGGGGGCAATGTTATGTGGGCTGGAACATGGAGAGTAGGAGGTGTTCTTGCTGTATCTCGGGCATTTGGCAATCGGTTATTGAAACAATATGTTGTGGCTGAACCTGAGATTCAGGAAGCAATAATTGATGATGATTTTGAGCTTCTTGTAATTGCGAGTGACGGGCTATGGGATGTAATCACAAATGAGGATGCAATTGCTCTTGTTAAAGCAATAGAAGATCCAGAAGTTGCAGCAAAAAAGTTGATTGAAACTGCCTATGCTAAGGGCAGTGCGGACAATATCACTTCTGTTGTGGTGCGATTTCATCATGGCAAACATGATCTGCCATAA___CAAAACAGCACAACAACAATTTTTACATTCAATGATATTATCTCCAAGTTCTGCTGGTCTATGATAGTCTTTGTAATAGAAATTCCAAGCTTCTTCCTCTGCATCAGCAGGAAAGATGATTGTATGGAAAGCAAAGTGAAAACAACTGTTTGGAAATGCACACTAGTATGGCAGTTTAGTTTTTGTGATAGACTTGTGCAGATACACTTCATTTTAACTATGCTATTTATTTTTAGCATAAGATGGGTGCATGAAGCTTGTACAGATATTTTTTTCTAATGCTTGTTTTATTTCTCATTTTAAAAAATACCATTGCTTT

Fln Alignment:

Contig10353___VVDDVNVMSVEDALNXXXXXXXXXXXXXVEDVFSDKDYVDDISLVSGGSESEDKRCSYGYASCQGRRATMEDFYDAKISKIXXXXXXXXXXXXXXXXSRAAQYLKQHLFDNLASHPKFMTDTKLAITEIYQQTDAEFLKAASSIYRDDGSTASTAVLVGHNLYVANVGDSRAVMSKAGEAIPLSEDHKPNRVDERERIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKQYVVAEPEIQEAIIDDDFELLVIASDGLWDVITNEDAIALVKAIEDPEVAAKKLIETAYAKGSADNITSVVVRFHH
D5ACX2_______________VEDDVHVSSVEDAVISTNTGSPSGIISGLEDVFSDKDYVDDLSLVSGGSESEDKRCSYGYASCQGRRATMEDFYDAKISKIDGDMVGFFGVFDGHGGSRAAQYLKQYLFDNLIRHPKFMTDTKLAITEIYQQTDAEFLKASSSIYRDDGSTASTAVLVGHNLYVANVGDSRAVMSKAGEAIPLSEDHKPNRSDERERIEQAGGNVMWAGTWRVGGVLAVSRAFGNRLLKQYVVAEPEIQEAIIDDDFELFVIASDGLWDVITNEDAIALVKAIEDPEVAAKKLIETAYAKGSADNITSVVVRFHH

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
124		16		83	0.994512
125	83		16		0.994512
127	83		16		0.994512
128		83		16	0.994512
129	83		16		0.994512
137	83		16		0.994512
138		16	83		0.994512
139	83			16	0.994512
142	16			83	0.994512
143		16	83		0.994512
144	83			16	0.994512
145	83	16			0.994512
146	16		83		0.994512
150	16		83		0.994512
221		16		83	0.994512
249		57		42	1.0
279	85		14		0.993533
350	12			87	0.992554
354	87		12		0.992554
396		14		85	0.993533
400	85	14			0.993533
402		14	85		0.993533
731	14			85	0.993533
735		16		83	0.994512
741	83		16		0.994512
756		83		16	0.994512
775		50		50	1.0
822	20			80	0.995493
823	20	80			0.995493
825	80		20		0.995493
826	80			20	0.995493
998	12			87	0.999964
999	12		87		0.999964
1124	85		14		0.993533
1191	80		20		0.995493
1481	91		8		1.0
1723		11		88	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain