SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10345

Length: 2075 nt

UniGene Fasta

>sp_v3.0_unigene10345
ATGGGGGCTGCCTACTTGCCTGTCTGCCTTCCTTTGTCGGTGTTAGTGGCACTGGCCTCCGTTGTATGCCTTGTCCATATAGAGATAGAGGTTTTTTGGGGCGGCAATGGCGAAGTGTAATTAAAAGGGAGCAGCCTACTGCCAAAGGTGGAGACCGCGATGAGGCCCCGCGTCAGGCTCGCCGAGGAGTCGAGATGCATGAAACAAATTGAGAATTTCTCTCCGAGAGGCATGGAGGTTCTGGTGGTGGATGATGACCCTCTCTGTCTCATGGTGCTCGAAAGAATGCTCCGGCAATGCGATTACAACGTGACGACCTGTAGCCGTGTTTCAGAAGCAATCTCCATGGTTAAGGAACGGAAAGATCGTTTTGATCTGGTAATGAGCGATGTGTATATGCCAAACGAGGACGGCTTCAAATTGCTCGAATTCATTGGTCTGACGCTCGATTTGCCAGTAATCATGATGTCGGCTAATGGAGAAACAAGTATGGTAATGAAGGGAATAACTCATGGAGCATGCGATTATTTGGTTAAACCTGTGCGAATGGAAGAGCTGCGGAACATATGGCAGCATGTTGTCCGCAGAAGAGGAAGAGAGTACCTTAGAGAGGAATCTGGGGACAGCGAGAATGAGACTAGTAAACTAGTCGAGAGCTCAGAATCGTCATCCAAAAAGAGAAAGGATTCCCAAAATTTGGACCATTCCAGCGAAATCATAGACGACATAAGTAGCCTGAAGAAGACCAGGATTCACTGGACTGTGCAACTCCATCAACAATTCGTAGCTGCGGTGAATCAATTGGGAATAGATAAGGCTGTCCCCAAGAGAATAATAGAAATCATGGGAGTACATGGTCTCACAAGAGAGAACGTAGCAAGCCATCTTCAGAAATACCGTCTTTACTTGAAGAGACTGAGCGGTTCGATTCCGGCACCATATCCAGTGGCTTCGTTCCAGGCTGCTGAGGGCGGCAAATCCGGTGGGAGAATGCATATACAACCTCCTGCAAAGAGTGGAGCCTCATCACCTGTATTAACCAAGGGCTTAAATTTGGGTTTTGCTACGAGCCCAAACAGTACAGGCAGTTTTGGAATTGGTGGAATCGACCAAGGCACTCTGAAATCACTGGAGCAGTACAGAGCTTACGAGCAGAAACGGGCAGCTAATCGAGCTCAGGTGTTGGGAGGGATTGGTATCATGCCTAGTAAACAATCAAGTGTTGGTCAATTACCAGCTGAATCGAAAGGTGGTCTCCAGCGAATGGCTTCTGTTGATCTAAGTCTGCTATGGAAAGCTCAACGGGATCAAGCTTCCAACCAAAAACCTGCCGGGTTGAACATCGGAGACGATTTAGCAGATCAGAGTTTCAAGAAAGCTGTGAAGCTCGAGAATGTTCAACTGGAGCCGTTCACTGTACAACCAACTTCCAAACATTCAAGGGCACACAGCATGAGCAATGTCTTGACGGATTTCTGTAATATTGATCCGCCTCTAACAGGTTTCCAAAGGTCAGGCATGCTCAAAGAGATCAATGAACTACAGCCAATGGAGGGCATCTCATGGGAGGGAAGCACAAGCGCCAAGGGTGAATTTAAGCCAGTGGAAGAAATGTCATGGAAAGGAAGCACAAGCACTGGGGGTGCTGGCGCTGAAGTTGGGGTAGACACTAGTGTTGATTTATTTGATGATTTCGTGGAGGAATATGGAATCACTTCTCTTTCTCCTCCTCCCACTGAAATGGATGAACAGAGCTTCGCTGGTGCTGACTTTGAAGGGATGGGCGAGGCTGGAAATCAGGATCCCTCGCCCATTGCACCAGATGATATTGCAGACTATCTTTTCGATGATTTCCTTCCTCGTTCAAGGTAGAAAGCTTTTCATTTCAATACGTACACCTGCAAAAAACCATTACATTTTGCATGCCATGATAATTGATATATGGTGTTGCTGCATGTTTTTATTTGTGTTTATTGGAACGTTTTCCTCTGTCACTTGGACTTTATAGGCACAATCCATTTTGGATGTGCATTTTGCATGTTCATTATTTTTCTTCTCTTAATTTATGTTTTATT

Ace file of the UniGene sp_v3.0_unigene10345

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type B response regulator n=2 Tax=Selaginella moellendorffii RepID=D8SC74_SELML	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Type-b response regulator	-	-	3.849e-32	-

Source	Gene names
Sma3	ARP3; ARP4; ARP5; ARR1; ARR10; ARR11; ARR12; ARR14; ARR18; ARR2; AT3G16857; At1g67710; At2g01760; At2g25180; At2g40970; At3g16857; At4g16110; At4g31920; At5g58080; CHLREDRAFT_113139; Ehd1; F10N7.270; F12A21.15; F13D4.140; FCAALL.297; GSVIVT00011538001; GS

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	-
Sma3	regulation of anthocyanin metabolic process	GO:0031537	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014778	-	-
Sma3	Response regulator, plant B-type	IPR017053	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16110.1	ARR2, RR2 response regulator 2 chr4:9112979-9115785 FORWARD LENGTH=664	54%
RefSeq	Arabidopsis thaliana	NP_193346.4	two-component response regulator ARR2, partial [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002311532.1	type-b response regulator, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D6

Fln msg: your sequence is longer than subject: 571 - 465

Fln protein: MRPRVRLAEESRCMKQIENFSPRGMEVLVVDDDPLCLMVLERMLRQCDYNVTTCSRVSEAISMVKERKDRFDLVMSDVYMPNEDGFKLLEFIGLTLDLPVIMMSANGETSMVMKGITHGACDYLVKPVRMEELRNIWQHVVRRRGREYLREESGDSENETSKLVESSESSSKKRKDSQNLDHSSEIIDDISSLKKTRIHWTVQLHQQFVAAVNQLGIDKAVPKRIIEIMGVHGLTRENVASHLQKYRLYLKRLSGSIPAPYPVASFQAAEGGKSGGRMHIQPPAKSGASSPVLTKGLNLGFATSPNSTGSFGIGGIDQGTLKSLEQYRAYEQKRAANRAQVLGGIGIMPSKQSSVGQLPAESKGGLQRMASVDLSLLWKAQRDQASNQKPAGLNIGDDLADQSFKKAVKLENVQLEPFTVQPTSKHSRAHSMSNVLTDFCNIDPPLTGFQRSGMLKEINELQPMEGISWEGSTSAKGEFKPVEEMSWKGSTSTGGAGAEVGVDTSVDLFDDFVEEYGITSLSPPPTEMDEQSFAGADFEGMGEAGNQDPSPIAPDDIADYLFDDFLPRSR*

Protein Length: 572

Fln nts: ATGGGGGCTGCCTACTTGCCTGTCTGCCTTCCTTTGTCGGTGTTAGTGGCACTGGCCTCCGTTGTATGCCTTGTCCATATAGAGATAGAGGTTTTTTGGGGCGGCAATGGCGAAGTGTAATTAAAAGGGAGCAGCCTACTGCCAAAGGTGGAGACCGCG_-_ATGAGGCCCCGCGTCAGGCTCGCCGAGGAGTCGAGATGCATGAAACAAATTGAGAATTTCTCTCCGAGAGGCATGGAGGTTCTGGTGGTGGATGATGACCCTCTCTGTCTCATGGTGCTCGAAAGAATGCTCCGGCAATGCGATTACAACGTGACGACCTGTAGCCGTGTTTCAGAAGCAATCTCCATGGTTAAGGAACGGAAAGATCGTTTTGATCTGGTAATGAGCGATGTGTATATGCCAAACGAGGACGGCTTCAAATTGCTCGAATTCATTGGTCTGACGCTCGATTTGCCAGTAATCATGATGTCGGCTAATGGAGAAACAAGTATGGTAATGAAGGGAATAACTCATGGAGCATGCGATTATTTGGTTAAACCTGTGCGAATGGAAGAGCTGCGGAACATATGGCAGCATGTTGTCCGCAGAAGAGGAAGAGAGTACCTTAGAGAGGAATCTGGGGACAGCGAGAATGAGACTAGTAAACTAGTCGAGAGCTCAGAATCGTCATCCAAAAAGAGAAAGGATTCCCAAAATTTGGACCATTCCAGCGAAATCATAGACGACATAAGTAGCCTGAAGAAGACCAGGATTCACTGGACTGTGCAACTCCATCAACAATTCGTAGCTGCGGTGAATCAATTGGGAATAGATAAGGCTGTCCCCAAGAGAATAATAGAAATCATGGGAGTACATGGTCTCACAAGAGAGAACGTAGCAAGCCATCTTCAGAAATACCGTCTTTACTTGAAGAGACTGAGCGGTTCGATTCCGGCACCATATCCAGTGGCTTCGTTCCAGGCTGCTGAGGGCGGCAAATCCGGTGGGAGAATGCATATACAACCTCCTGCAAAGAGTGGAGCCTCATCACCTGTATTAACCAAGGGCTTAAATTTGGGTTTTGCTACGAGCCCAAACAGTACAGGCAGTTTTGGAATTGGTGGAATCGACCAAGGCACTCTGAAATCACTGGAGCAGTACAGAGCTTACGAGCAGAAACGGGCAGCTAATCGAGCTCAGGTGTTGGGAGGGATTGGTATCATGCCTAGTAAACAATCAAGTGTTGGTCAATTACCAGCTGAATCGAAAGGTGGTCTCCAGCGAATGGCTTCTGTTGATCTAAGTCTGCTATGGAAAGCTCAACGGGATCAAGCTTCCAACCAAAAACCTGCCGGGTTGAACATCGGAGACGATTTAGCAGATCAGAGTTTCAAGAAAGCTGTGAAGCTCGAGAATGTTCAACTGGAGCCGTTCACTGTACAACCAACTTCCAAACATTCAAGGGCACACAGCATGAGCAATGTCTTGACGGATTTCTGTAATATTGATCCGCCTCTAACAGGTTTCCAAAGGTCAGGCATGCTCAAAGAGATCAATGAACTACAGCCAATGGAGGGCATCTCATGGGAGGGAAGCACAAGCGCCAAGGGTGAATTTAAGCCAGTGGAAGAAATGTCATGGAAAGGAAGCACAAGCACTGGGGGTGCTGGCGCTGAAGTTGGGGTAGACACTAGTGTTGATTTATTTGATGATTTCGTGGAGGAATATGGAATCACTTCTCTTTCTCCTCCTCCCACTGAAATGGATGAACAGAGCTTCGCTGGTGCTGACTTTGAAGGGATGGGCGAGGCTGGAAATCAGGATCCCTCGCCCATTGCACCAGATGATATTGCAGACTATCTTTTCGATGATTTCCTTCCTCGTTCAAGGTAG___AAAGCTTTTCATTTCAATACGTACACCTGCAAAAAACCATTACATTTTGCATGCCATGATAATTGATATATGGTGTTGCTGCATGTTTTTATTTGTGTTTATTGGAACGTTTTCCTCTGTCACTTGGACTTTATAGGCACAATCCATTTTGGATGTGCATTTTGCATGTTCATTATTTTTCTTCTCTTAATTTATGTTTTATT

Fln Alignment:

Contig10345___MMSANGETSMVMKGITHGACDYLVKPVRMEELRNIWQHVVRRRGREYLREESGDSENXXXXXXXXXXXXXXXXXXXQNLXXXXXXXXXXXXLKKTRIHWTVQLHQQFVAAVNQLGIDKAVPKRIIEIMGVHGLTRENVASHLQKYRLYLKRLSGSIPAPYPVASFQAAEGGKSGGRMHIQPPAKSGASSPVLTKGLNLGFATSPNSTGSFGIGGIDQGTLKSLEQYRAYEQKRAANRAQVLGGIGIMPSKQSSVGQLPAE---SKGGLQRMASVDLSLLWKAQRDQAS--NQKPAGLNIGDDLADQSFKKAVKLENVQLEPFTVQPTSKHSRAHSMSNVLTDFCNIDPPLTGFQRS----GMLKEINELQPMEGISWEGSTSAKGEFKPVEEMSWKGSTSTGGAGAEVGVDTSVDLFDDFVEEYGITSLSPPPT-EMDEQSFAGADFEGMGEA--GNQXXXXXXXXXXXXYLFDDFLPRSR
D5A9D6_______________VMSTNGDTSVVMKGITHGACDYFIKPIRIEELRNIWQHVVRRRGRESLKDDLGECEDREASDSPETTSKKRKDTSSGDFSDEVIDDISS--LKRARVHWTVQLHQQFVVAVNQLGIDKAVPKKIVEIMKVQGLSRENVASHLQKYRLYLKRLSGAISEPYPVASFQAADDSVSGGMMKLQQGEK-GVTSSSGAKGLNLGTGVS----SSLGVRGLDQSTLKSLQQYRSYQQKLVANRAQILGGIGICSPNFSNTAKVPESMGGSKSGLQRMSSVDMGLLWKAQRELAADENEKHGTAN----LQNLSQKKLNSSEQRRFR----GSHPRHSRTRTLTDMPIVFQSAKPEVT-FQNTPPAKSMLQDVDELLPMDDISWLDST-----FRPESPIDSTFRPESPRA--------AVILFDTFVQDVGGSSHSAATTEESNRHAFASTDFEGRKKAGVGNEDFFSSGSTDISDYLVDDLIPHPR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1926	14	85			0.993533
1935		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain