SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10328

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10328
CGTCGTGACCTTGGCTGTCACTCATTTTCTCTTCATTACCAACGTGCATATACAATTGGAATGTCATCTGCCTCGGCCTCCAATTCCACTGCTGCATCTTTCCATGACAGCATTCATTGTTACAGTCGCGGCCCAGATGTCAAGAACACCTTCGCAATCCATCTCTACCATCGTCTTATTCCTTACTGATTGCGAGTTTTCACTGACCACCAGGAATAGGAGGAGGGGCAGAACTTAGCTTCTCAAATAGAAGGAGCTATTGCGGTTGCCTCGGTTCATGTTGCCATTTTCTTTCTGACCTATGCAGAATCAAAATGGTGTCTGAATGAGCTCCTCCTCATGTCCCAGTAGTGGGCTACCATTATTCCAGTCTTTTATGATGTCAAACCCTAA

Ace file of the UniGene sp_v3.0_unigene10328 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	6.0e-22	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ96

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 53 aas, your sequence is shorter than subject: 97 - 166

Fln protein: MSSASASNSTAASFHDSIHCYSRGPDVKNTFAIHLYHRLIPY*LRVFTDHQE*EEGQNLASQIEGAIAVASVHVAIFFLTYAESKWCLNELLLMSQ*

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTCTTCATTACCAACGTGCATATACAATTGGA_-_ATGTCATCTGCCTCGGCCTCCAATTCCACTGCTGCATCTTTCCATGACAGCATTCATTGTTACAGTCGCGGCCCAGATGTCAAGAACACCTTCGCAATCCATCTCTACCATCGTCTTATTCCTTACTGATTGCGAGTTTTCACTGACCACCAGGAATAGGAGGAGGGGCAGAACTTAGCTTCTCAAATAGAAGGAGCTATTGCGGTTGCCTCGGTTCATGTTGCCATTTTCTTTCTGACCTATGCAGAATCAAAATGGTGTCTGAATGAGCTCCTCCTCATGTCCCAGTAGTGGGCTACCATTATTCCAGTCTTTTATGATGTCAAACCCTAA

Fln Alignment:

Contig10328___RGPDVKNTFAIHLYHRLIPY*LRVFTDHQE*EEGQNLASQIEGAIAVASVHVAIFFLTYAESKWCLNELLLMSQ*WATIIPVFYDVKP
B8LQ96_______________RGPDVKKTFASHLYRDLSKYGLKVFLDDPEMQPGDSLIRQIEGAVGTASVHVAVFSSRYAESRWCLVELLLMLKSGKTIIPVFYDVKP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
126	20		80		0.995493
149	20			80	0.995493
169		75	25		0.996473
171		75	25		0.996473
283	75			25	0.996473
286		75	25		0.996473
289		25		75	0.996473
313	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain