SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10320

Length: 1381 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10320

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	2.0e-09	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	RNA and export factor binding protein, putative	-	-	3.345e-16	-

Source	Gene names
Sma3	At1g66260; At5g02530; At5g37720; At5g59950; GSVIVT00018525001; GSVIVT00022454001; GSVIVT00024369001; Hin19; LOC_Os03g17010; LOC_Os11g01020; LOC_Os12g01010; MICPUN_79216; OJ1663_D06.13; OSJNBb0032E15.120; Os03g0278300; Os06g0256200; Os07g0237100; Os08g0427

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02530.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr5:564332-565776 REVERSE LENGTH=292	4.06377e-44	52%
RefSeq	Arabidopsis thaliana	NP_001190207.1	THO complex subunit 4 [Arabidopsis thaliana]	5.04467e-44	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG8

Fln msg:

Fln protein: MANSLDMSLDDLIKNNKPFRGRGRGGGSGGFRRGGFRGGGGFRGGRGGGGRGGPMRRGGGLPVRSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDYGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAEVVFSRNSDALAAMQRYNGVQLDGKPMKIEVVGTNLALPVLTGTSAGRGRGASMTGGYAGATSSRRRGGGWNWGRGLGFRRGRGRGRGRGRGRGRRNQVPDKSMEELNKELEEYHAEAMQTS*

Protein Length: 271

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGGTTCCAGCATTTTAACTTCATCTTTGCACTAAAGTATTCCCCTTCTCGCGAAGCTATTCTGCTCGAAAGGAAACATCCCAAGTTCCCAGTTAAAATACATACTAGGTTTTCAACCGAGGGTTTAGGGTTTTGAAGCCAGTGTTTGCGAGCAGGCAGTTTTTAGACCTCGAACGCAGCTCAAAGGTGTAGGCCATAAACCCTCTGGACTGTTATTTACCCTCTGGTTTTTTCGTCTTGTTTTGGGTTGGTTGTTGCATTTTCAAAATATATCGAACATCGTGGTGAAAGTGGTTTTGGTTGGGTGGACAGGACAGCGGATTGATCCTCGCGAAG_-_ATGGCAAACTCTCTGGATATGTCATTAGACGACCTCATTAAGAACAACAAGCCCTTCCGTGGCCGTGGCAGAGGAGGAGGAAGTGGTGGTTTTCGCAGAGGTGGTTTTCGGGGTGGTGGTGGTTTCCGCGGCGGCAGAGGCGGCGGCGGCAGAGGAGGACCCATGCGCAGAGGAGGAGGGCTGCCGGTTCGATCTACGCCATATACAATTGCCAAGTCTTTCGGCCGAGCCAAGGGTTCTGTTTGGCAGAATGATATGTTTGAGGATAGCATGGAAGCCTTTGGCGTGCAGCTTGGATTTGAGACTGGTACAAAATTGTACGTCTCCAATTTGGATTATGGAGTGTCCAATGACGATATGAAGCAACTGTTTTCAGAGGTTGGCGAGCTTAAACGGTGTTCAATCCATTATGATAGAAGTGGTCGTTCCAAGGGTACAGCAGAAGTGGTTTTTTCAAGGAACAGTGATGCACTTGCAGCAATGCAGAGGTACAATGGTGTCCAGCTCGATGGCAAGCCAATGAAGATTGAGGTTGTTGGTACAAACTTGGCTTTGCCTGTTTTGACTGGAACATCTGCTGGAAGAGGACGGGGAGCTTCCATGACAGGTGGATACGCAGGGGCTACTTCCTCAAGAAGAAGAGGTGGTGGCTGGAACTGGGGCCGTGGGCTTGGATTTAGGCGTGGCCGTGGTCGTGGACGGGGACGCGGAAGAGGGCGTGGCCGAAGAAACCAAGTACCTGATAAGTCTATGGAGGAACTCAATAAAGAGTTGGAAGAATATCACGCTGAAGCAATGCAAACTTCTTAA___AATTGTAGCCTGTACAGGCAGGATCTTGTAGGAGAGGTTTTTTTTGTATTTTTGAGAGTTGTTCCAGGGAAACACACAGATGATGTAGAGAAGGTACTTTTTTTCGGTATTTATGTTGCTATCCTATCTTTTTTGCCCAGGCACAATATTTTGGATTAATCTTTTATCTTGTCAATCGGTGGGTCATCTTTAATTTTAACCTTTTAAA

Fln Alignment:

Contig10320___MANSLDMSLDDLIKNNKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVRSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDYGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAEVVFSRNSDALAAMQRYNGVQLDGKPMKIEVVGTNLALPV-----LTGTSAGRGRGASM--TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVPDKSMEELNKELEEYHAEAMQTS
D5AEG8_______________MANSLDMSLEDLIKNNKQFSGGRGRGGSRGRGRGGGRGGSRGGDGVGRGRRGQQLRVNSN--ARPSPYSIAKSFNRAKGVVWQHDMFEDSMAAIGMPIGLETGTKLYVSNLDSGVSNQDIKELFTEVGDLKSCALHYDRSGRSNGTAEVVFVKKVDAVAAVKRYNNVQLDGKPMKIELVGTGLSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGRGGRRGRGRSQVPDKSAAELDKELENYHTEAMQTS

SSRs (tot: 2)

Start position	End position	Sequence	Length
475	486	GGT GGT GGT GGT	12
502	513	GGC GGC GGC GGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain