SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10308

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene10308
AAAACTCTCGATGATAGATTCATTATTAAGCAGGTCACTAAAACAGAATTGGAGTCCTTTCTTGTCTTTGCCCCAGAATATTTCAAACATCTTACAAACTCGTTATGTACAGGAAGCCCCACATGCCTGGCAAAAATCCTTGGAATTTATCAGGTTACTGTAAAACATCCAAAAGGTGCAAAAGATGTTAAGATGGACCTTATGGTGATGGAGAATCTTTTGTTTGGAAGGACTGCAACACAGATTTATGACCTGAAAGGCTCTCTTCGCAACCGATACAATACAGATTCAAGTGGAGTTCTTCTAGATCAGAATTTTATT

Ace file of the UniGene sp_v3.0_unigene10308

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa Japonica Group]	-	-	6.0e-38	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Fyve finger-containing phosphoinositide kinase, fyv1, putative	-	-	7.861e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.15-	-	1.555e-15	-

Source	Gene names
Sma3	AT4g33240; At1g34260; At1g71010; At1g71010/F15H11.20; At3g14270; At4g33240; F15H11.20; F23M19.8; F4I10.170; GSVIVT00001768001; GSVIVT00016365001; GSVIVT00030472001; GSVIVT00034002001; LOC_Os03g28140; LOC_Os12g13440; MICPUN_61078; MtrDRAFT_AC183502g30v2; O

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	phosphatidylinositol phosphate kinase activity	GO:0016307	Molecular Function	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	phosphatidylinositol metabolic process	GO:0046488	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14270.1	FAB1B phosphatidylinositol-4-phosphate 5-kinase family protein chr3:4754624-4761185 FORWARD LENGTH=1791	4.06377e-44	71%
RefSeq	Arabidopsis thaliana	NP_188044.1	1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana]	5.04467e-44	71%
RefSeq	Populus trichocarpa	XP_002303331.1	predicted protein [Populus trichocarpa]	4.2039e-45	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABH6

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 107 - 318

Fln protein: KTLDDRFIIKQVTKTELESFLVFAPEYFKHLTNSLCTGSPTCLAKILGIYQVTVKHPKGAKDVKMDLMVMENLLFGRTATQIYDLKGSLRNRYNTDSSGVLLDQNFI

Protein Length: 108

Fln nts: AAAACTCTCGATGATAGATTCATTATTAAGCAGGTCACTAAAACAGAATTGGAGTCCTTTCTTGTCTTTGCCCCAGAATATTTCAAACATCTTACAAACTCGTTATGTACAGGAAGCCCCACATGCCTGGCAAAAATCCTTGGAATTTATCAGGTTACTGTAAAACATCCAAAAGGTGCAAAAGATGTTAAGATGGACCTTATGGTGATGGAGAATCTTTTGTTTGGAAGGACTGCAACACAGATTTATGACCTGAAAGGCTCTCTTCGCAACCGATACAATACAGATTCAAGTGGAGTTCTTCTAGATCAGAATTTTATT

Fln Alignment:

Contig10308___KTLDDRFIIKQVTKTELESFLVFAPEYFKHLTNSLCTGSPTCLAKILGIYQVTVKHPKGAKDVKMDLMVMENLLFGRTATQIYDLKGSLRNRYNTDSSG---VLLDQNFI
D5ABH6_______________KSLDERFIIKQVTRTELESFIKFASEYFKYLSDSLSSGSPTCLAKILGIYQVTIKNTKSGKEIRMDLMVMENLLFGRNVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
42	75			25	0.996473
43	75		25		0.996473
44		75	25		0.996473
45	75		25		0.996473
131	10	90			0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain