SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10296

Length: 3177 nt

UniGene Fasta

>sp_v3.0_unigene10296
CGTCGTGACCTTGGCTGTCAGTGGATGTTTAATAATGGAGAAGGCAAAGAGAAGGTAGTACAGCATTAACCAGGATGACAACATAGTGAGCTTATTATCTATGGCGTAAAATAAACGAATGAAAACGGCAACCAGAGCACGGATGCAAACAAGAACCAATCTCAGATGCCTCTAGCATCCGCCATGGCAGGCGATGGAAGCATTTTGGCAATGGAACTCCTCGCAATTGGAAGGAGCAGCAGCGGTAACAGTTTCCGTCTGCTCAATTTGAAACCCGGCCGAAAAAAATGTACAGTTCCCCAACCCGTCCGCCTCCGTTCCTACACTCCCAAGAGAGAGCTGAATTTGATGCTGAAATCCTCTTCATACGAACGAACCGGCCGTCTATGTGCTTATCGGAAATTGAACATTCTCTGCGCCAACAACCACGGCAAGGGCGAGGCAGACCACTCTCATCACCATCACCATCACCAACACCATCATCATCACCATCATGATCTCCAGGAGAAGGGGCCATCTTCTGGACACTTGGATGAATGCCAAGAGCGGCAGTTAAACAGGGTTCAGAAGGCCCTCGTATTGCTGGCCAAGGCCACGGGATGGGCCAATTTAGCAGATGCTTTGCGGGAGAATTTCCGTCTCTGCTGTTCTTCTATGGTTTTGTTACTTCTGGCTGCCGTTTGCCCTTACGTCATGCCCAAGACCGCTTCACGATCGGCTCAGAATGCCCTAATTGCACTCGCATTTCCTCTCGTTGGGATATCAGCAGCACTTGATGCATCTATTGACATTGCCGGTGGCAGAGTCAATATCCACGTTCTCATGACTTTAGCTGCATTTGCATCTGTGTTTATGGGAAACAGCCTTGAAGGTGGTTTGCTTCTTGCCATGTTTAACCTTGCTCATATTGCGGAGGAATATTACACAAAGCGAGCAATGGGTGATGTCAAGGCACTAAAGGAAAGCAATCCAGAGTTCGCTCTTGTTTTGGATGCATTTGATTCAGCAGTACCTCATCAGTTTTCCTCAATGGCTTCCAAACGTGTTCCTGTGCATGATTTGGAAGTTGGTTCATACATATTGGTCCGGGCTGGTGAGGCTGTACCAGTTGATGGAGAAGTATGCCAAGGAGTATCTATGGTGACTGTTGAACACTTAACAGGAGAGGCTAACCCACTTGAGAAGCAAGTTGGAGATAGTGTTCCTGGTGGTGCTAGAAACTTGGATGGGATGTTGATAATCAAGGCGACCAAGACGTGGAAGGATTCAACCTTGTCCAAGATTATGCATTTGACTGAAGAAGCACAACTGAACAAACCAAAATTACAGAGATGGCTTGATGAGTTTGGAGAACATTACAGCGAGGCTATTGTGGTGGTATCAGCTGTAGTGGCTCTTTTTGGGCCATTTTTATTCAAGTGGCCATTTATAGGTACTCCAGGAGCCCGAGGATCCATTTACAGGGCATTGGGCCTCATGGTAGCGGCTTCCCCATGTGCATTAGCAGTGGCTCCTCTAGCTTATGCAACTGCAATTAGTGCTTGTGCAAGTAAGGGTATCCTGTTAAAAGGTGGACATGCATTGGATGCACTTGCATCTTGCGATACTATTGCATTTGACAAAACTGGAACTTTAACCACGGGGGGTCTTGTCTGCAAGGGAATTGAACCAATCCATGGACATAGTTTACTTGGACGGAATGACAAGAATGTTAATGCTTGCTGCAATCCAAGCTGTGAAAACGAAGCTCTTGCGGTGGCATCTGCTATGGAAAAAGGAACCACACATCCCATTGCAAGAGCAGTCGCAGATCACAGCGAGGGAAAAGAACTTCCTCCTGTTTCAATTGAACATTTTGAATCTCTACCAGGCAAAGGTCTAGTTGCTACATTGACTGGCATACAGTCAGGGGATGGTGTTCCTCTAAAGGCCACACTTGGTTCGGTGGAGTATATTTCATCTTTATTTAGAAATGAGTTTGAATCAAGGAAAATCAAAGAGGCAGCAAGTGCTTCTCCTTATGGTCAAGATCTGGTGCATGCAGTACTGTCTGTAAACAATAAGGTCACTCTTTTTCACTTTGAGGATAAAATTCGACCTGGAGCTACAGATGTCGTGTCCACATTAAAAAATAAAGCTGGCCTTCGTTTGATGATGTTGACGGGTGATCATGCATCAAGTGCATCACGGGTTGCTAAGGCTGTTGGTATTGATGAGGTCTATTCTGGTCTTAAGCCTGAGGATAAGCTCCATCAAGTAAAATCTCTGTCACGCAATGGGGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCACCAGCTTTGGCTGCTGCAACTGTGGGGATTGTTCTTGCACAACGTGCAAGTGCAACGGCGGTGGCTGTAGCAGATGTTCTTCTCTTAGAGGATAATATCAACAGTGTACCTTTCATTATTGCAAAGGCACGTCAAACAACTTCCTTGGTAAAGCAGAGCGTGCTGCTTGCATTATCATGTATCTTTTTTGCTGCTCTTTCATCTGTGATGGGATTTCTGCCTCTCTGGCTGACGGTTCTTCTGCATGAAGGTGGAACACTTTTAGTGTGTGTCAATTCTGCCCGTGCACTGAACAATCCTACTTGGTCATGGACCCATGATTTAAGAAGAGCAGTAGACGATTTGGTGGCATCAATATCCAACATCTTGAAGCAGTTCTCTTCCAATGATGTTCAAGCAGCGCCATCTTAAATGCTAACTAGTCTTCGTTTTATTTTCATTATTTTATGGATCTTATTTCCTAATTTATTTGTATATGCTAGTTGAATTGAGCCATTTGTGCCAAGGCTATTAAGTTCAAATTAAAGCATTAAATATTGTAACAACTTTTTTAAACTCAGTTCTGTAGCCATGTATTTGGGATCGCCATGCGTCTCACATCTTTTAAGGTAAAGGTTGTTATCTTCATAGCAACCAAGAGAATAACCAATAGAATTGATGGTTTCAGTCAATCCTGATTGTGTTGTTGTAATTTTAGTTCTTGGGCAATCAAGCCTAAAATTGGATTTGACAAAACAGTGACATACCTTGGAAGATATATACAAAGGTGATGTCAGGGAAGCCTCGCCTCTTCAAAATATGCATTTTATGGCAAGTTTTAAAACATGAATGTTCTCAAGCTATATTACTTAAATG

Ace file of the UniGene sp_v3.0_unigene10296

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cadmium/zinc-transporting ATPase HMA1 [Arabidopsis thaliana] sp\|Q9M3H5.2\|AHM1_ARATH RecName: Full=Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; Flags: Precursor emb\|CAB16773.1\| Cu2+-transporting ATPase-like protein [Arabidopsis t	-	-	0.0	60%
FL-Next	sp=Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Sma3	Zinc-exporting ATPase.	EC:3.6.3.5	-	5.391e-11	-

Source	Gene names
Sma3	AP22.4; At2g23280; At4g37270; C7A10.90; GSVIVT00001769001; GSVIVT00019567001; GSVIVT00027081001; HMA1; MICPUN_62740; Os06g0690700; OsI_24259; OsJ_22445; P0532H03.5; P0661G04.38; PHYPADRAFT_125638; PHYPADRAFT_148958; POPTRDRAFT_651119; POPTRDRAFT_819936; R

Source	GOs	Term	Type	Identity
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	cadmium-exporting ATPase activity	GO:0008551	Molecular Function	-
Sma3	cadmium-transporting ATPase activity	GO:0015434	Molecular Function	-
Sma3	zinc transporting ATPase activity	GO:0015633	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	zinc-exporting ATPase activity	GO:0016463	Molecular Function	-
Sma3	cadmium ion binding	GO:0046870	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	cellular copper ion homeostasis	GO:0006878	Biological Process	-
Sma3	response to toxin	GO:0009636	Biological Process	-
Sma3	response to light intensity	GO:0009642	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-
Sma3	zinc ion homeostasis	GO:0055069	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating	IPR006404	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37270.1	HMA1, ATHMA1 heavy metal atpase 1 chr4:17541987-17546352 REVERSE LENGTH=819	66%
RefSeq	Arabidopsis thaliana	NP_195444.1	putative cadmium/zinc-transporting ATPase HMA1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002310116.1	heavy metal ATPase, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M3H5

Fln msg: your sequence is longer than subject: 856 - 819

Fln protein: MPLASAMAGDGSILAMELLAIGRSSSGNSFRLLNLKPGRKKCTVPQPVRLRSYTPKRELNLMLKSSSYERTGRLCAYRKLNILCANNHGKGEADHSHHHHHHQHHHHHHHDLQEKGPSSGHLDECQERQLNRVQKALVLLAKATGWANLADALRENFRLCCSSMVLLLLAAVCPYVMPKTASRSAQNALIALAFPLVGISAALDASIDIAGGRVNIHVLMTLAAFASVFMGNSLEGGLLLAMFNLAHIAEEYYTKRAMGDVKALKESNPEFALVLDAFDSAVPHQFSSMASKRVPVHDLEVGSYILVRAGEAVPVDGEVCQGVSMVTVEHLTGEANPLEKQVGDSVPGGARNLDGMLIIKATKTWKDSTLSKIMHLTEEAQLNKPKLQRWLDEFGEHYSEAIVVVSAVVALFGPFLFKWPFIGTPGARGSIYRALGLMVAASPCALAVAPLAYATAISACASKGILLKGGHALDALASCDTIAFDKTGTLTTGGLVCKGIEPIHGHSLLGRNDKNVNACCNPSCENEALAVASAMEKGTTHPIARAVADHSEGKELPPVSIEHFESLPGKGLVATLTGIQSGDGVPLKATLGSVEYISSLFRNEFESRKIKEAASASPYGQDLVHAVLSVNNKVTLFHFEDKIRPGATDVVSTLKNKAGLRLMMLTGDHASSASRVAKAVGIDEVYSGLKPEDKLHQVKSLSRNGAGGLIMVGDGINDAPALAAATVGIVLAQRASATAVAVADVLLLEDNINSVPFIIAKARQTTSLVKQSVLLALSCIFFAALSSVMGFLPLWLTVLLHEGGTLLVCVNSARALNNPTWSWTHDLRRAVDDLVASISNILKQFSSNDVQAAPS*

Protein Length: 857

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATGTTTAATAATGGAGAAGGCAAAGAGAAGGTAGTACAGCATTAACCAGGATGACAACATAGTGAGCTTATTATCTATGGCGTAAAATAAACGAATGAAAACGGCAACCAGAGCACGGATGCAAACAAGAACCAATCTCAG_-_ATGCCTCTAGCATCCGCCATGGCAGGCGATGGAAGCATTTTGGCAATGGAACTCCTCGCAATTGGAAGGAGCAGCAGCGGTAACAGTTTCCGTCTGCTCAATTTGAAACCCGGCCGAAAAAAATGTACAGTTCCCCAACCCGTCCGCCTCCGTTCCTACACTCCCAAGAGAGAGCTGAATTTGATGCTGAAATCCTCTTCATACGAACGAACCGGCCGTCTATGTGCTTATCGGAAATTGAACATTCTCTGCGCCAACAACCACGGCAAGGGCGAGGCAGACCACTCTCATCACCATCACCATCACCAACACCATCATCATCACCATCATGATCTCCAGGAGAAGGGGCCATCTTCTGGACACTTGGATGAATGCCAAGAGCGGCAGTTAAACAGGGTTCAGAAGGCCCTCGTATTGCTGGCCAAGGCCACGGGATGGGCCAATTTAGCAGATGCTTTGCGGGAGAATTTCCGTCTCTGCTGTTCTTCTATGGTTTTGTTACTTCTGGCTGCCGTTTGCCCTTACGTCATGCCCAAGACCGCTTCACGATCGGCTCAGAATGCCCTAATTGCACTCGCATTTCCTCTCGTTGGGATATCAGCAGCACTTGATGCATCTATTGACATTGCCGGTGGCAGAGTCAATATCCACGTTCTCATGACTTTAGCTGCATTTGCATCTGTGTTTATGGGAAACAGCCTTGAAGGTGGTTTGCTTCTTGCCATGTTTAACCTTGCTCATATTGCGGAGGAATATTACACAAAGCGAGCAATGGGTGATGTCAAGGCACTAAAGGAAAGCAATCCAGAGTTCGCTCTTGTTTTGGATGCATTTGATTCAGCAGTACCTCATCAGTTTTCCTCAATGGCTTCCAAACGTGTTCCTGTGCATGATTTGGAAGTTGGTTCATACATATTGGTCCGGGCTGGTGAGGCTGTACCAGTTGATGGAGAAGTATGCCAAGGAGTATCTATGGTGACTGTTGAACACTTAACAGGAGAGGCTAACCCACTTGAGAAGCAAGTTGGAGATAGTGTTCCTGGTGGTGCTAGAAACTTGGATGGGATGTTGATAATCAAGGCGACCAAGACGTGGAAGGATTCAACCTTGTCCAAGATTATGCATTTGACTGAAGAAGCACAACTGAACAAACCAAAATTACAGAGATGGCTTGATGAGTTTGGAGAACATTACAGCGAGGCTATTGTGGTGGTATCAGCTGTAGTGGCTCTTTTTGGGCCATTTTTATTCAAGTGGCCATTTATAGGTACTCCAGGAGCCCGAGGATCCATTTACAGGGCATTGGGCCTCATGGTAGCGGCTTCCCCATGTGCATTAGCAGTGGCTCCTCTAGCTTATGCAACTGCAATTAGTGCTTGTGCAAGTAAGGGTATCCTGTTAAAAGGTGGACATGCATTGGATGCACTTGCATCTTGCGATACTATTGCATTTGACAAAACTGGAACTTTAACCACGGGGGGTCTTGTCTGCAAGGGAATTGAACCAATCCATGGACATAGTTTACTTGGACGGAATGACAAGAATGTTAATGCTTGCTGCAATCCAAGCTGTGAAAACGAAGCTCTTGCGGTGGCATCTGCTATGGAAAAAGGAACCACACATCCCATTGCAAGAGCAGTCGCAGATCACAGCGAGGGAAAAGAACTTCCTCCTGTTTCAATTGAACATTTTGAATCTCTACCAGGCAAAGGTCTAGTTGCTACATTGACTGGCATACAGTCAGGGGATGGTGTTCCTCTAAAGGCCACACTTGGTTCGGTGGAGTATATTTCATCTTTATTTAGAAATGAGTTTGAATCAAGGAAAATCAAAGAGGCAGCAAGTGCTTCTCCTTATGGTCAAGATCTGGTGCATGCAGTACTGTCTGTAAACAATAAGGTCACTCTTTTTCACTTTGAGGATAAAATTCGACCTGGAGCTACAGATGTCGTGTCCACATTAAAAAATAAAGCTGGCCTTCGTTTGATGATGTTGACGGGTGATCATGCATCAAGTGCATCACGGGTTGCTAAGGCTGTTGGTATTGATGAGGTCTATTCTGGTCTTAAGCCTGAGGATAAGCTCCATCAAGTAAAATCTCTGTCACGCAATGGGGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCACCAGCTTTGGCTGCTGCAACTGTGGGGATTGTTCTTGCACAACGTGCAAGTGCAACGGCGGTGGCTGTAGCAGATGTTCTTCTCTTAGAGGATAATATCAACAGTGTACCTTTCATTATTGCAAAGGCACGTCAAACAACTTCCTTGGTAAAGCAGAGCGTGCTGCTTGCATTATCATGTATCTTTTTTGCTGCTCTTTCATCTGTGATGGGATTTCTGCCTCTCTGGCTGACGGTTCTTCTGCATGAAGGTGGAACACTTTTAGTGTGTGTCAATTCTGCCCGTGCACTGAACAATCCTACTTGGTCATGGACCCATGATTTAAGAAGAGCAGTAGACGATTTGGTGGCATCAATATCCAACATCTTGAAGCAGTTCTCTTCCAATGATGTTCAAGCAGCGCCATCTTAA___ATGCTAACTAGTCTTCGTTTTATTTTCATTATTTTATGGATCTTATTTCCTAATTTATTTGTATATGCTAGTTGAATTGAGCCATTTGTGCCAAGGCTATTAAGTTCAAATTAAAGCATTAAATATTGTAACAACTTTTTTAAACTCAGTTCTGTAGCCATGTATTTGGGATCGCCATGCGTCTCACATCTTTTAAGGTAAAGGTTGTTATCTTCATAGCAACCAAGAGAATAACCAATAGAATTGATGGTTTCAGTCAATCCTGATTGTGTTGTTGTAATTTTAGTTCTTGGGCAATCAAGCCTAAAATTGGATTTGACAAAACAGTGACATACCTTGGAAGATATATACAAAGGTGATGTCAGGGAAGCCTCGCCTCTTCAAAATATGCATTTTATGGCAAGTTTTAAAACATGAATGTTCTCAAGCTATATTACTTAAATG

Fln Alignment:

Contig10296___NRVQKALVLLAKATGWANLADALRENFRLCCSSMVLLLLAAVCPYVMPKTASRSAQNALIALAFPLVXXXXXXXXXXXXXXXRVNIHVLMTLAAFASVFMGNSLEGGLLLAMFNLAHIAEEYYTKRAMGDVKALKESNPEFALVLDAFDSAVPHQFSSMASKRVPVHDLEVGSYILVRAGEAVPVDGEVCQGVSMVTVEHLTGEANPLEKQVGDSVPGGARNLDGMLIIKATKTWKDSTLSKIMHLTEEAQLNKPKLQRWLDEFGEHYSEXXXXXXXXXXLFGPFLFKWPFIGTPGARGSIYRALGLMVAASPCXXXXXXXXXXXXISACASKGILLKGGHALDALASCDTIAFDKTGTLTTGGLVCKGIEPIHGHSLLGRNDKNVNACCNPSCENEALAVASAMEKGTTHPIARAVADHSEGKELPPVSIEHFESLPGKGLVATLTGIQ--SGDGVPLKATLGSVEYISSLFRNEFESRKIKEAASASPYGQDLVHAVLSVNNKVTLFHFEDKIRPGATDVVSTLKNKAGLRLMMLTGDHASSASRVAKAVGIDEVYSGLKPEDKLHQVKSLSRNGAGGLIMVGDGINDAPALAAATVGIXXXXXXXXXXXXXXXXXXXEDNINSVPFIIAKARQTTSLVKQSVLLALSCIFFAALSSVMGFLPLWLTVLLHEGGTLLVCVNSARALNNPTWSWTHDLRRAVDDL
Q9M3H5_______________SKPQKMLFGFAKAIGWVRLANYLREHLHLCCSAAAMFLAAAVCPYLAPEPYIKSLQNAFMIVGFPLVGVSASLDALMDIAGGKVNIHVLMALAAFASVFMGNALEGGLLLAMFNLAHIAEEFFTSRSMVDVKELKESNPDSALLIEVHNGNVPN-ISDLSYKSVPVHSVEVGSYVLVGTGEIVPVDCEVYQGSATITIEHLTGEVKPLEAKAGDRVPGGARNLDGRMIVKATKAWNDSTLNKIVQLTEEAHSNKPKLQRWLDEFGENYSKVVVVLSLAIAFLGPFLFKWPFLSTAACRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGAQVLDALASCHTIAFDKTGTLTTGGLTCKAIEPIYGHQ--GGTNSSVITCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSIFVESFEYFPGRGLTATVNGVKTVAEESRLRKASLGSIEFITSLFKSEDESKQIKDAVNASSYGKDFVHAALSVDQKVTLIHLEDQPRPGVSGVIAELKSWARLRVMMLTGDHDSSAWRVANAVGITEVYCNLKPEDKLNHVKNIAREAGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADILLLRDNITGVPFCVAKSRQTTSLVKQNVALALTSIFLAALPSVLGFVPLWLTVLLHEGGTLLVCLNSVRGLNDPSWSWKQDIVHLINKL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
100		42		57	1.0
165	66		33		1.0
289	66		33		0.997452
320		33		66	0.997452
727		11		88	0.923564
808		12		87	0.992554
1168	85		14		0.993533
1288	16			83	0.999991
1292		83		16	0.999991
1366		88		11	0.923564
1510	81			18	0.999994
1616	12		87		0.992554
1632	12		87		0.992554
1633		12	87		0.992554
1635	87			12	0.992554
1636		85		14	0.993533
2397	33			66	0.997452
2400		66		33	0.997452
2626		18		81	0.999994
3075		70	30		1.0
3100		12		87	0.992554
3101	12		87		0.992554
3103		87		12	0.992554
3131			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
454	473	CATCAC CATCAC CATCAC CA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain