SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10282

Length: 1854 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10282

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Utp14 multi-domain protein	-	-	4.0e-12	23%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%

Source	Gene names
Sma3	AT2G25670; AT4g32610; At2g25670; At4g32610; At4g32615; F4D11.190; GSVIVT00016798001; GSVIVT00032535001; Os01g0179300; Os05g0179800; OsI_00641; OsI_18680; OsJ_00610; OsJ_17336; P0406H10.18; P0453H11.1; P0509B06.20; PHYPADRAFT_107057; PHYPADRAFT_234439; POP

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25670.1	" BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13	3.0e-13	52%
RefSeq	Arabidopsis thaliana	NP_850066.1	uncharacterized protein [Arabidopsis thaliana]	4.0e-13	52%
RefSeq	Populus trichocarpa	XP_002308632.1	predicted protein [Populus trichocarpa]	9.0e-14	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SUI8

Fln msg:

Fln protein: MVGGGNKRDDVSLGISSTNIFAALDSRRRKSSKKKSDKDQGSTSSRNSSKDKSDQKSAEPQQFWAPAPVTAKSWADVDDDEDYYATTAPPPPVWGSQPPVQSNEETRANLSQAEESDGEEDAFDEVDDDAEEEQDHEAEIAAPTEPVVNKPLLPTLVVSREPERQLSKKELKKKELAELDAVLAELGLGPKETNESNGFDEEAKPETPNGDVNGEGAAALIESKSSKRRKAKKEKSFKEQKDEDINPKDGENKVKNGENEQPVEDDNSRKEEEEDQGAVPIDPKERIKKIASFKKKKSSKELDAAAKAAAIEAAARAAKLAAAKKKEKNHYNQQPVR*

Protein Length: 339

Fln nts: AATAACAATAATAATATGGTGGAGGGTTCTACAAATTGTGCCCTGCGGGGAATAGCAAGTTATGGTTAAAGTCGGCGTGTGAGAATAGGAAAAGTCCTGGATAAACAAACGAACCATTTGATTATTATAGTTCCCACAAATATTTTCTCCTTTGGCGTGATCCTATAAACGCTTTTCCTTTCAGCTATCTCACTCTGGCCCTATGACTCTCCATATCGAGGGTTTCCCATCACCCACAGCAACAGTAGAAGTGGATCGCGTCCTGCACTAAGAAAACCTCAGGCATTCTCTGCCCTTTGGCCCTCTGCAACATATATTGATCTCGTCTGCAATTTAATCATCCGTGCGGAGCTGTGGCTAATACTAAAGAGAAGAAGAGCAGAAGAAACGAGGGTTTAATCCGTAGGATAGG_-_ATGGTCGGAGGGGGAAACAAGAGGGACGATGTATCGCTGGGAATAAGCAGCACCAATATCTTTGCAGCGCTCGACAGCCGACGAAGAAAGTCAAGCAAGAAGAAGTCCGACAAAGATCAGGGCAGCACATCCTCCCGGAATAGCAGCAAGGACAAGTCGGATCAAAAGTCGGCGGAGCCCCAGCAATTCTGGGCTCCTGCACCCGTCACCGCTAAATCCTGGGCCGACGTCGACGACGATGAAGACTATTATGCTACCACCGCGCCTCCTCCACCTGTCTGGGGATCGCAACCTCCAGTGCAGAGCAATGAGGAGACCAGAGCGAACTTGAGTCAGGCCGAGGAAAGTGATGGTGAGGAGGATGCTTTTGATGAAGTTGATGATGACGCTGAGGAGGAACAGGATCATGAAGCTGAAATTGCTGCTCCCACAGAGCCAGTGGTGAATAAGCCCCTTCTTCCTACATTAGTAGTGTCACGAGAGCCAGAGAGACAGCTTTCCAAGAAAGAATTAAAAAAGAAAGAATTGGCCGAGCTTGATGCGGTTCTCGCTGAGCTAGGCCTCGGACCAAAGGAGACAAACGAGTCAAATGGATTTGATGAAGAGGCTAAACCAGAAACACCTAATGGAGATGTAAATGGTGAAGGAGCTGCTGCTCTTATAGAGAGTAAAAGTTCAAAAAGACGGAAAGCAAAGAAGGAAAAGTCTTTCAAGGAACAAAAAGATGAAGATATCAATCCAAAGGATGGTGAGAATAAAGTGAAAAACGGAGAAAATGAACAACCAGTTGAGGACGACAATTCTAGGAAAGAGGAAGAAGAAGATCAAGGTGCAGTCCCTATTGATCCTAAGGAGCGAATAAAAAAGATTGCTTCTTTCAAGAAGAAGAAGTCGAGCAAAGAACTTGATGCTGCAGCTAAAGCAGCTGCTATAGAGGCTGCTGCCAGAGCTGCTAAGCTTGCTGCAGCCAAGAAAAAGGAGAAAAATCACTATAATCAGCAGCCTGTAAGGTAA___AGGGATAATTCAGGATCAATTTAGAGCTTAGGATAGGCGAGCAATGAGAGCACTGCAATAGATAAATTGTGATATTTGATTGAGAGGCTTATTGCCAAGTTTTTAACATTTGATGGTGGGTGAATTGTTAATTATTCAAAGATTTCAATTAATGATCTTGGGAGAACACCCAATGTAAAGCATTTTGTGTCAAGTTAGTATGTTGATGTTTAGCTTGTGCGTTATAATACTGAATAACAAGCAGTACACAAAACTGTGCTTCTAAGGGTTCAGTTCGATATTTAGAATCATCTGTTATGGATTGGTTAGATAAATTATTCATTCTGGAAACTCTGTCACGAATGTTTGTAAAATTGTCGGTAAGACAGATTTCAAGGTCTCTTTTAAGTCTCAATTGTTGAAATGATTCTAATTATTAGTTGGTGATG

Fln Alignment:

Contig10282___MVGGGNKRDDVSLGISSTNIFAALXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXXXXAEPQQFWAPAPVTAKSWADVDDDEDYYATTAXXXXXXXXXXXXXXNEETRANLSQAEESXXXXXXXXXXXXXXXXXXXXXXXXXXPTEPVVNKPLLPTLVVSREPXXXXXXXXXXXXXXXXXXXXXXXXXXGPKETN---ESNGFDEEAKPETPNGDVNGEG
D7SUI8_______________MVGGGSRRDEGSMVINNNNVFAVLESLRKKKKSDKERGSS-----KSKGSSKAQEKDPEPQVFWAPARLTVKSWADVDDDDDYYATTA----PPQSVWGTSEQSQTMEKPTQVEESESEEDILDEVDDDLEEEHDHEPEVPVQPEPVVKKPVESSL-VSKETERQLTKKERKKKELAELEALLADFGVSQKESNGQVESHGVSQEKKEEDKKGELNGDG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1108	87			12	0.992554
1110	87		12		0.992554
1111	87		12		0.992554
1128	33		66		0.997452
1129	66	33			0.997452
1131		66		33	0.997452
1132	66			33	0.997452
1243	33		66		1.0
1290	20			80	0.995493
1381		75		25	0.996473
1382	50			50	1.0
1455	83		16		0.994512
1471	10		90		0.90298
1474	90		10		0.90298
1658	89			10	0.999919
1824	75		12	12	0.975346
1830	16		83		0.994512
1831	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1292	1303	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain