SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10275

Length: 1511 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10275 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxyacylglutathione hydrolase 2 [Arabidopsis thaliana] gb\|AEC08531.1\| Hydroxyacylglutathione hydrolase 2 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Glyoxalase II	-	-	1.96e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 2.7.11.1.	EC:2.7.1.37	-	2.972e-08	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.697e-10	-
Sma3	Hydroxyacylglutathione hydrolase.	EC:3.1.2.6	-	3.032e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		3.032e-20	%

Source	Gene names
Sma3	AT4g08480; At1g06130; At1g53570; At1g63700; At2g31350; At2g43430; At3g10850; At4g08470; At4g08480; At4g08500; At4g12020; At5g66850; B0103C08-B0602B01.10; CHLREDRAFT_121660; CHLREDRAFT_133171; CHLREDRAFT_98709; DUPR11.32; F16J13.90; F22G10.18; GLO_2; GLX2-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	hydroxyacylglutathione hydrolase activity	GO:0004416	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	beta-lactamase activity	GO:0008800	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	kinase binding	GO:0019900	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	MAPK cascade	GO:0000165	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	antibiotic catabolic process	GO:0017001	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Reticulon	IPR003388	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Hydroxyacylglutathione hydrolase	IPR017782	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G31350.1	GLX2-5 glyoxalase 2-5 chr2:13368451-13370802 FORWARD LENGTH=324	68%
RefSeq	Arabidopsis thaliana	NP_850166.1	Hydroxyacylglutathione hydrolase 2 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002309787.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT10

Fln msg: No stop codon before M and low homology subject,

Fln protein: MAKHVPCLKDNYAYLLHDSSSGTTGIVDPSEPGPIRDILSKRRYKLTYILNTHHHYDHTGGNLELKATYGAKVIGPLGEKDRIPGIDIALRDGEKWMFGGHEMHVLETPGHTKGHVSFYFPESGVIFTGDTLFSLSCGKLFEGSAEQMWSSLSKIASLSDHVRIFCGHEYTVSNAKFALSIEPGNDALRSYAARASELRSKGLPTVPSTLAEEKSCNPFLRPFSAEIRKSLNIPDTASEAEVLGRVRKAKDMF*

Protein Length: 255

Fln nts: GTACACAACAGATTCTTGCAGGATTGGCATATTTGCATAGCAAAAGTACTGTGCACAGGGACATCAAAGGAGCTAACGTGCTAGTAGATCCCAATGGTCAAGTAAAGCTGGCAGACTTTGGC_-_ATGGCTAAACATGTTCCATGCCTAAAAGACAACTATGCATATCTATTGCATGATTCAAGCTCTGGTACTACAGGGATAGTGGATCCTTCTGAGCCTGGACCAATAAGAGATATCTTAAGTAAGAGAAGGTACAAGCTGACGTATATTCTGAACACTCATCATCACTATGATCATACTGGCGGGAACTTGGAATTGAAAGCCACATATGGTGCCAAGGTAATTGGACCTCTTGGTGAGAAAGACCGAATTCCTGGCATTGATATTGCTTTGCGCGATGGCGAAAAATGGATGTTTGGAGGTCATGAAATGCATGTGCTGGAGACCCCTGGGCATACAAAAGGTCATGTTAGCTTCTATTTTCCAGAATCAGGGGTAATATTCACTGGAGACACACTTTTTAGCTTATCTTGTGGCAAACTTTTTGAAGGATCTGCTGAGCAGATGTGGTCTTCACTCTCGAAAATTGCGTCATTGTCAGATCATGTGCGTATCTTTTGTGGCCATGAATATACTGTGAGCAATGCAAAATTTGCATTGTCCATAGAGCCAGGCAATGATGCACTTCGTTCTTACGCAGCACGTGCATCTGAACTTCGCAGCAAAGGCTTACCAACGGTACCATCAACCCTAGCAGAGGAAAAATCATGTAATCCATTTCTGCGTCCTTTCAGTGCTGAAATTAGGAAGTCTTTAAATATTCCAGACACTGCAAGCGAGGCAGAAGTCTTAGGCAGAGTTCGGAAGGCAAAGGATATGTTTTGAAAAATCAAATCCATTGCTATTGTCAGGATTATTTAGAACAAGTTCCAAGCAAGTATGGCTGATGTTGATGATAAAAGAAGAGTATGGCCCAGGGCCAAATATATTTTTCTTCTTACTGTTAGAGATGAAACGAGTGGAAATGAGGTATCCACATTTTGTCTCGGACAATAATTGGGTTTGAGTTTATCACAGCAATATTTTTGAAGGTAATATCATAACTGGTTGCTAACAGTGTGCATACTTGTTCCAATATTGTCTTAGCACAGGAGAGCTTGTAATTACCACCCACAATTTAATTTTCAGGAGTGTGAAGAGACAAGATTATGTGGTCTCACATGTTGATTCTATATTTTTTGATACTGTACAGAAAATCGGAAGAATATTTTCTGTTCAACAACGTCTCTATAATCTAGTGATAGTGTACTGTTTAATATTCAGTACATTACATCGGAAACATTAATTATGCAAGGTGGAATGCATGCAAATAAAAATGTAAAAACGTAACCCAGGGTAGGCCCCATACCACCATAATTTTGGGGATACATGGTGTTCAATTTGTCCCGAATAAAATTTGGGCTAGGAAGCAAAATTTTATGTTTTTAAATGCCATTCAAAATGATTCTTGCT

Fln Alignment:

Contig10275___VPCLKDNYAYLLHDSSSGTTGIVDPSEPGPIRDILSKRRYKLTYILNTHHHYDHTGGNLELKATY-GAKVIGPLGEKDRIPGIDIALRDGEKWMFGGH-EMHVLETPGHTKGHVSFYFPESG----VIFTGDTLFSLSCGKLFEGSAEQMWSSLSKI-ASLSDHVRIFCGHEYTVSNAKFALSIEPGNDALRSYAARASELRSKGLPTVPSTLAEEKSCNPFLRPFSAEIRKSLNIPDTASEAEVLGRVRKAKD
A9NT10_______________VPCLEDNYAYLIIDEDTGEAAVVDPVEPQNILQAAEVHGANIKFVLTTHHHWDHAGGNEELKKLVPGIEVYG--GAKDHVKGCTVALEHGDELSLGRTVTIKALHTPCHTKGHISYFLTSTSGDDPAVFTGDTLFIAGCGKFFEGSAEQMYQSLCKILASLPRSTQVFCGHEYTVKNLRFAMTVEPENERIKQKLNWAEQQRRENKPTVPSTIQDELESNPFMRVDRLELKE---LVGHNSPVHVLGEIRQMKD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
912		11		88	0.923564
1180		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain