SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10262

Length: 2801 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10262
AGTACTAACAAATACCTATTGGCTTTCTTCAATGTGAAACCCAAGGTACAATCTTGGCGGACTGTTTTAACCTTAGCGTATCAAAGCCTTGGTGTTGTTTATGGTGATTTAAGTATCTCTCCCCTCTATGTTTACAAAAGCACCTTTGCAGAAGACATTCAGCACTCTCAGACCAATGAAGAGATTTTTGGTGTTTTGTCCTTTGTCTTTTGGACTTTGACCCTGGTCCCTCTGTTCAAATATGTGTTTATAGTGCTGAGAGCTGATGACAATGGGGAAGGTGGTACATTTGCATTATATTCTTTATTATGCAGGCATGCCAATATTAGTCTGTTGCCAAACCGTCAGCTTGTTGATGAGGAAGTCTCCACCTACAAATTGGAATATCCCCCTGAGACAAAGAGTGGGTCAAGGGTTAAAAAGATTCTTGAAAATCATAAGAATTTGCATACTGCATTGCTAATCGTGGTTCTACTTGGCACCTGTATGGTTATTGGAGATGGGATACTAACCCCGGCCATTTCTGTTTTTTCTGCAGTATCTGGGCTCGAACTTTCCATGACAAGGGAACACCATGAATATGCAGTTGTTCCTATCACATGCTTCATATTGGTTTGTCTGTTTGCCTTGCAACACTACGGTACACACAGGGTGGGTTCAATATTTGCACCTATTATTGTGGCTTGGCTTCTGTGCATTAGTGCACTTGGTCTCTACAACATCATCCACTGGAACCCACATGTTTATCGAGCCCTCTCGCCATATTATATGTACAAATTTTTAAGGAAGACGAGAAAGGCAGGTTGGATGTCCTTGGGTGGCATTCTGTTGTGCATCACAGGTTCAGAGGCAATGTTTGCTGATCTTGGACACTTCTCCCATTTGTCTATCAAGATTGCTTTCACTTCTATAGTTTATCCTGCTTTGATTTTAGCTTATATGGGTCAAGCTGCTTATCTCTCAAAACATCATCATATGGGAAATAGCTATGCAATTGGTTTCTATGTATCTGTTCCAGAGGCTGTGCGGTGGCCAGTACTAGGAGTTGCGATACTTGCAGCAGTGGTTGGAAGTCAAGCAATCATCACTGGGACATTTTCAATTATCAACCAGAGCTTGGCACTGGGTTGCTTTCCTAGGGTGAAAGTAGTGCATACTTGTGACAAAATACATGGACGGATATACATTCCAGAAATCAACTGGATTTTGATGATCCTATGTCTAGCTGTTACTATTGGTTTTCAAGATACCAAACGAATGGGAAATGCATCTGGTTTAGCTGTCATCACAGTCATGCTAGTTACTACCTGCCTTACATCATTGGTAATAATTATATGCTGGCATAAGAGTATTCTACTAGCAGTATGCTTTCTACTTTTCTTTGGATCTATCGAAGCCCTCTACTTCTCAGCTTCTCTCATTAAGTTTCTAGAAGGGGCCTGGGTACCTATTCTTCTGGCTCTCATATTCATGACTATCATGTATGTGTGGCATTATGGGACAATAAAGAAGTATGACTTCGATTTGCAAAACAAGGTATCCATAAAATGGCTGCTTTCACTTGGTCCTAGTTTGGGGATTGTGCGTGTCCCTGGAATTGGCCTTATGTACACAGAACTTGTCACTGGGATACCTGCAAATTTTACACATTTTGTAACAAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTATATGCATTAAATCGGTGCCAGTGCCGTATGTTCCCGCAGAAGAACGGTTTCTCATTGGTCGCGTAGGGCCTAAAGAGTACAGGTTATACAGATGCATTGTTCGATATGGTTACCGCGATGTCCATGGGGATACTGATGATTTTGAGGATCAGCTTATTCTCAACCTCGGAGAGTTTATTCGTTCAGAAGCAAAACATTCTTGCTCAAGTGACAATTACTCTGCAGACTCTGCAGATGGAAGAATGGCTGTGATTGGAACCCCTGTGCAAGGCTTGGAGAGCATTCTAAGTTACGAAACAACAGAAGAGAGCATACAGTCTGTTAATCTATCCCATCTTCCGTCACAGACCATCCAAAGCATACAGGATCTTATAGAAACTGACTCTCCTCATCTGGCTCGGAGGAGGAAAGTCCGATTTTTGCTGCCTAGCAGTCCTGATATTGATTCTGATGTAAAGGATGAGTTGCAAGAACTCTTTCAGGCTAGGGAATCTGGAGTTGCCTTTATATTAGGGCACTCTTATGTTAAAGCAAAAAATGACTCGTCTTTTTTGAAAAAGCTTGCCATTAATTGTGCGTACAATTTTCTCAGAAAAAATTGCAGGGGACCTTCAGTGGCATTGCGCATTCCCCATATCTCACTTTTAGAGGTTGGTATGGTTTATCTCGTTTGAGTCAGGATCTATATTCCCTGTTGCTGCTTCCAAAGAACATGGGCATCACGTGGCAGTTTTGATCTCTTTTCCTGAGTTTGGCACGGATTATCTTGATTGGGTCAGAGTATCATTGTACCCTAATGCACTGGCCCATGCACATAGATACAGTCCAAACATTTTCTGATGCGCAGCGTGGAGGCAGTACATATTCTGAAAGGAATTGGTACAAATTTAGCTTAACATCGATGCATTATAAGCATCAACTTTAAAGGAAACAAATTCAGCTTTAAGAGGCCTGAAAATGTAACAACATTATAAAGCTTTCAGGCGCTGCATATTTTCTCCCGACTAGCATTAATTAGAATAGACACATTAGTGAATTTCTTGGAATGTAAGTAGCCTGTTTACATTCTGCTTGGTAACCTTGAAAAAGAATTCTAACATAGGTTTTC

Ace file of the UniGene sp_v3.0_unigene10262 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9S4D1_RICCO	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Potassium transporter, putative	-	-	3.78351e-44	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At5g09400; At5g14880; CHLREDRAFT_121823; F17O7.17; F18F4.60; F1C9.17; F23F1.18; F9D16.110; GSVIVT00000271001; GSVIVT00002512001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40540.1	KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 potassium transporter 2 chr2:16931445-16934516 FORWARD LENGTH=794	69%
RefSeq	Arabidopsis thaliana	NP_001078032.1	potassium transporter 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002328990.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 627 - 250

Fln protein: MVIGDGILTPAISVFSAVSGLELSMTREHHEYAVVPITCFILVCLFALQHYGTHRVGSIFAPIIVAWLLCISALGLYNIIHWNPHVYRALSPYYMYKFLRKTRKAGWMSLGGILLCITGSEAMFADLGHFSHLSIKIAFTSIVYPALILAYMGQAAYLSKHHHMGNSYAIGFYVSVPEAVRWPVLGVAILAAVVGSQAIITGTFSIINQSLALGCFPRVKVVHTCDKIHGRIYIPEINWILMILCLAVTIGFQDTKRMGNASGLAVITVMLVTTCLTSLVIIICWHKSILLAVCFLLFFGSIEALYFSASLIKFLEGAWVPILLALIFMTIMYVWHYGTIKKYDFDLQNKVSIKWLLSLGPSLGIVRVPGIGLMYTELVTGIPANFTHFVTNLPAFHQVLVFICIKSVPVPYVPAEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDDFEDQLILNLGEFIRSEAKHSCSSDNYSADSADGRMAVIGTPVQGLESILSYETTEESIQSVNLSHLPSQTIQSIQDLIETDSPHLARRRKVRFLLPSSPDIDSDVKDELQELFQARESGVAFILGHSYVKAKNDSSFLKKLAINCAYNFLRKNCRGPSVALRIPHISLLEVGMVYLV*

Protein Length: 628

Fln nts: AGTACTAACAAATACCTATTGGCTTTCTTCAATGTGAAACCCAAGGTACAATCTTGGCGGACTGTTTTAACCTTAGCGTATCAAAGCCTTGGTGTTGTTTATGGTGATTTAAGTATCTCTCCCCTCTATGTTTACAAAAGCACCTTTGCAGAAGACATTCAGCACTCTCAGACCAATGAAGAGATTTTTGGTGTTTTGTCCTTTGTCTTTTGGACTTTGACCCTGGTCCCTCTGTTCAAATATGTGTTTATAGTGCTGAGAGCTGATGACAATGGGGAAGGTGGTACATTTGCATTATATTCTTTATTATGCAGGCATGCCAATATTAGTCTGTTGCCAAACCGTCAGCTTGTTGATGAGGAAGTCTCCACCTACAAATTGGAATATCCCCCTGAGACAAAGAGTGGGTCAAGGGTTAAAAAGATTCTTGAAAATCATAAGAATTTGCATACTGCATTGCTAATCGTGGTTCTACTTGGCACCTGT_-_ATGGTTATTGGAGATGGGATACTAACCCCGGCCATTTCTGTTTTTTCTGCAGTATCTGGGCTCGAACTTTCCATGACAAGGGAACACCATGAATATGCAGTTGTTCCTATCACATGCTTCATATTGGTTTGTCTGTTTGCCTTGCAACACTACGGTACACACAGGGTGGGTTCAATATTTGCACCTATTATTGTGGCTTGGCTTCTGTGCATTAGTGCACTTGGTCTCTACAACATCATCCACTGGAACCCACATGTTTATCGAGCCCTCTCGCCATATTATATGTACAAATTTTTAAGGAAGACGAGAAAGGCAGGTTGGATGTCCTTGGGTGGCATTCTGTTGTGCATCACAGGTTCAGAGGCAATGTTTGCTGATCTTGGACACTTCTCCCATTTGTCTATCAAGATTGCTTTCACTTCTATAGTTTATCCTGCTTTGATTTTAGCTTATATGGGTCAAGCTGCTTATCTCTCAAAACATCATCATATGGGAAATAGCTATGCAATTGGTTTCTATGTATCTGTTCCAGAGGCTGTGCGGTGGCCAGTACTAGGAGTTGCGATACTTGCAGCAGTGGTTGGAAGTCAAGCAATCATCACTGGGACATTTTCAATTATCAACCAGAGCTTGGCACTGGGTTGCTTTCCTAGGGTGAAAGTAGTGCATACTTGTGACAAAATACATGGACGGATATACATTCCAGAAATCAACTGGATTTTGATGATCCTATGTCTAGCTGTTACTATTGGTTTTCAAGATACCAAACGAATGGGAAATGCATCTGGTTTAGCTGTCATCACAGTCATGCTAGTTACTACCTGCCTTACATCATTGGTAATAATTATATGCTGGCATAAGAGTATTCTACTAGCAGTATGCTTTCTACTTTTCTTTGGATCTATCGAAGCCCTCTACTTCTCAGCTTCTCTCATTAAGTTTCTAGAAGGGGCCTGGGTACCTATTCTTCTGGCTCTCATATTCATGACTATCATGTATGTGTGGCATTATGGGACAATAAAGAAGTATGACTTCGATTTGCAAAACAAGGTATCCATAAAATGGCTGCTTTCACTTGGTCCTAGTTTGGGGATTGTGCGTGTCCCTGGAATTGGCCTTATGTACACAGAACTTGTCACTGGGATACCTGCAAATTTTACACATTTTGTAACAAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTATATGCATTAAATCGGTGCCAGTGCCGTATGTTCCCGCAGAAGAACGGTTTCTCATTGGTCGCGTAGGGCCTAAAGAGTACAGGTTATACAGATGCATTGTTCGATATGGTTACCGCGATGTCCATGGGGATACTGATGATTTTGAGGATCAGCTTATTCTCAACCTCGGAGAGTTTATTCGTTCAGAAGCAAAACATTCTTGCTCAAGTGACAATTACTCTGCAGACTCTGCAGATGGAAGAATGGCTGTGATTGGAACCCCTGTGCAAGGCTTGGAGAGCATTCTAAGTTACGAAACAACAGAAGAGAGCATACAGTCTGTTAATCTATCCCATCTTCCGTCACAGACCATCCAAAGCATACAGGATCTTATAGAAACTGACTCTCCTCATCTGGCTCGGAGGAGGAAAGTCCGATTTTTGCTGCCTAGCAGTCCTGATATTGATTCTGATGTAAAGGATGAGTTGCAAGAACTCTTTCAGGCTAGGGAATCTGGAGTTGCCTTTATATTAGGGCACTCTTATGTTAAAGCAAAAAATGACTCGTCTTTTTTGAAAAAGCTTGCCATTAATTGTGCGTACAATTTTCTCAGAAAAAATTGCAGGGGACCTTCAGTGGCATTGCGCATTCCCCATATCTCACTTTTAGAGGTTGGTATGGTTTATCTCGTTTGA___GTCAGGATCTATATTCCCTGTTGCTGCTTCCAAAGAACATGGGCATCACGTGGCAGTTTTGATCTCTTTTCCTGAGTTTGGCACGGATTATCTTGATTGGGTCAGAGTATCATTGTACCCTAATGCACTGGCCCATGCACATAGATACAGTCCAAACATTTTCTGATGCGCAGCGTGGAGGCAGTACATATTCTGAAAGGAATTGGTACAAATTTAGCTTAACATCGATGCATTATAAGCATCAACTTTAAAGGAAACAAATTCAGCTTTAAGAGGCCTGAAAATGTAACAACATTATAAAGCTTTCAGGCGCTGCATATTTTCTCCCGACTAGCATTAATTAGAATAGACACATTAGTGAATTTCTTGGAATGTAAGTAGCCTGTTTACATTCTGCTTGGTAACCTTGAAAAAGAATTCTAACATAGGTTTTC

Fln Alignment:

Contig10262___MYTELVTGIPANFTHFVTNLPAFHQVLVFICIKSVPVPYVPAEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDDFEDQLILNLGEFIRSEAKHSCSSDNYSADSADGRMAVIGTPVQGLESILSYETTEESIQSVNLSHLPSQTIQSIQDLIETDSPHLARRRKVRFLLPSSPDIDSDVKDELQELFQARESGVAFILGHSYVKAKNDSSFLKKLAINCAYNFLRKNCRGPSVALRIPHISLLEVGMVYLV
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSAD---GRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1912	88	11			0.923564
1913		11		88	0.923564
1915			88	11	0.923564
2032	90	10			0.90298
2036	88			11	0.923564
2041	12		87		0.992554
2042		12	87		0.992554
2043	12	87			0.992554
2044			87	12	0.992554
2045	87			12	0.992554
2130	90			10	0.90298
2257		75		25	0.996473
2417	50		25		0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain