SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10255

Length: 2290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10255
GAAGACGATGGAAATGTAATGTGTCATGGAGTGAGATGAGTAACAGCGAATCCTTGGTAGTAAAGCTTAAATATGGCATCAACACCCCTAGCCTTACCACGCACATTAGCTCAGTATTTGCCTAGATCGTCCTTTCTGTCGTTCAAATTATACCAGGAACTGAGTCTTCCTTCAAGCTTGTCACACCGTTGTAGTAGGCGATTTGGGTCATCTCCCAAGGCCTTGTTTCAAGTGGGTTTTGCTGGACTGAGGCCTAAACTCATCTGGCAGGAGCAAACAAGGAAGTTCACTGCAATGGGTGCAGGGGGGGTTTCTGATATCACGTCCTCGGCTGCTGTGACCGGGACTAACCTTGGATTGACGAAACCTGCAGAGGTCACTTTGCCAGAGTTCACATTTTCTGCCAAGGAAATCCACGTGACAGAGTGGAAAGGTGATATCTTGGCAGTGGGTGTGTTTGAAAACGACGTGACAAAGGATGAGAGTGGGGTATTTGCAAATCCTACACTGAAGAAGCTTGACAGCCATGTCGGGGGTGTGTTGAGTGATGTCATGAAGGAGGAGGACTTCTCAGGGAAGGCTGGTCAGGCAACATTTGTTAGGCTTCCTGGTTTTGGGTTTAAGAGAGTGGGATTGATTGGCCTCGGAAAGAATGGGTCTACTTCTTTGACTAAGTCATTGAAAGGGTTTGCGGAGAATCTTGCTGGAGCTGCAAAGACTGCCCAGGCCACCGAAGTGGCTGTGACTTTAGCTTCCACCGAAGATCTTTCTATTTCTTTGAAGCTCAACGCTGTATTGACTATAGCAGCAGGGGTGCTTCTGGGTATTTATGAGGACACTCGTTTCAAGTCAGAGGCAAAGAAGCCTTCATTCCTCAAGTGTTTGGATTTTCTTGGACTTGGCAGTGGTCCTGAGTTTGAACAGAAGTTCAAGTATATCCAGCAAGTTTGTTCTGGAGTTATTCTATCTAGGCAACTTGTAAATGCACCTGCAAACGTAATTACTCCTAGTGCACTTGCAAACGAAGCGTCCAACATTGCCTCTGCTTACAGTGATGTACTCACTGCAAAGATATTGGATGTAGAGCAATGTGAAGAGTTGAAAATGGGATCATATTTAGGAGTGGCTGCAGCATCTGCAAACCCTCCAAAGTTCATTCACCTTTGCTACAAGCCTCCAACTGGAGATGTTAAGACTAAACTTGCCATAGTTGGAAAAGGATTGACATTTGATAGTGGAGGTTACAACATCAAGACAGGACCAGGATGTCTTATTGAACTCATGAAGTTTGACATGGGAGGTTCTGCAGCAGTTCTTGGTGCAGCAAAGGCTATTGGTCAAATTAAACCTCCCGGGGTGGAGGTCCATTTCATTGTTGCTGCATGTGAAAACATGATTAGTGGCACTGGTATGCGGCCTGGTGACATAGTTACAGCTTCAAACGGGAAGACAATTGAGGTAAATAACACGGATGCTGAAGGCAGGTTGACATTGGCAGATGCTTTGGTTTATGCATGTAAACAAGGCGTTCATAAGGTGGTCGATCTTGCAACTCTCACTGGAGCCTGCATAATTGCTCTTGGAAATGAAATTGCTGGAATGTACACTCCTAATGATGAAATGGCAGAAGAAATATCCAAAGCTGCAGAAATTGCAGGAGAAAAGTTTTGGAGAATGCCACTTGAGGAAAGCTATTGGGAATCAATGAAATCTGGGATTGCTGATATGGTGAACACTGGAGGCCGTCAAGGTGGCTCCATCACTGCTGCACTTTTTCTTAAGCAGTTTGTGGATGAAAATGTGCAATGGCTGCATATAGACATGGCTGGACCAGTGTGGAGTGATAAGAAACGTGGTGCAACAGGATTTGCTGTCTCAACCTTGGTTGAATGGGTTGTGGAAAACTCATCATGAATACTAGCTGAACAAAAGGGGTTCTGTTGACGTTTATTATTTCAATATTTCTGTGAACATGGTATTATCATCCTAGTTGTCTAAGAGCTTAGAATTAATGTTTATTAATTTTGAGGTTCATATGAAGCTACGTGGGTAGATTCTGTAGGATGCAGGGCTGCTTTATTTTAAATATCTTCTTATTGTGGCACAGATCAACTGGTCTGCTGTATCTTCTTTTCTGGCATGGATTGACTGGTCAAATAAATATGAAGATGGGGGGAGAGTAATAGTATTAAATGTTAATACATTTTTGTAGACTGGAATTGTGGCCCTAGCAGTTAACCATCTGGAATATAAAATAAATTCTTAATAATAAATAAAGGTTTATCAATGT

Ace file of the UniGene sp_v3.0_unigene10255 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine aminopeptidase, putative n=1 Tax=Ricinus communis RepID=B9STR1_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	metalloexopeptidase activity	GO:0008235	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M17	IPR011356	-	-
Sma3	Peptidase M17, leucyl aminopeptidase, C-terminal	IPR000819	-	-
Sma3	Peptidase M17, leucyl aminopeptidase, N-terminal	IPR008283	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30920.1	Cytosol aminopeptidase family protein chr4:15046589-15049304 REVERSE LENGTH=583	66%
RefSeq	Arabidopsis thaliana	NP_194821.1	leucine aminopeptidase 3 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002325134.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY6

Fln msg:

Fln protein: MASTPLALPRTLAQYLPRSSFLSFKLYQELSLPSSLSHRCSRRFGSSPKALFQVGFAGLRPKLIWQEQTRKFTAMGAGGVSDITSSAAVTGTNLGLTKPAEVTLPEFTFSAKEIHVTEWKGDILAVGVFENDVTKDESGVFANPTLKKLDSHVGGVLSDVMKEEDFSGKAGQATFVRLPGFGFKRVGLIGLGKNGSTSLTKSLKGFAENLAGAAKTAQATEVAVTLASTEDLSISLKLNAVLTIAAGVLLGIYEDTRFKSEAKKPSFLKCLDFLGLGSGPEFEQKFKYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSDVLTAKILDVEQCEELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKTKLAIVGKGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVHKVVDLATLTGACIIALGNEIAGMYTPNDEMAEEISKAAEIAGEKFWRMPLEESYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSDKKRGATGFAVSTLVEWVVENSS*

Protein Length: 615

Fln nts: GAAGACGATGGAAATGTAATGTGTCATGGAGTGAGATGAGTAACAGCGAATCCTTGGTAGTAAAGCTTAAAT_-_ATGGCATCAACACCCCTAGCCTTACCACGCACATTAGCTCAGTATTTGCCTAGATCGTCCTTTCTGTCGTTCAAATTATACCAGGAACTGAGTCTTCCTTCAAGCTTGTCACACCGTTGTAGTAGGCGATTTGGGTCATCTCCCAAGGCCTTGTTTCAAGTGGGTTTTGCTGGACTGAGGCCTAAACTCATCTGGCAGGAGCAAACAAGGAAGTTCACTGCAATGGGTGCAGGGGGGGTTTCTGATATCACGTCCTCGGCTGCTGTGACCGGGACTAACCTTGGATTGACGAAACCTGCAGAGGTCACTTTGCCAGAGTTCACATTTTCTGCCAAGGAAATCCACGTGACAGAGTGGAAAGGTGATATCTTGGCAGTGGGTGTGTTTGAAAACGACGTGACAAAGGATGAGAGTGGGGTATTTGCAAATCCTACACTGAAGAAGCTTGACAGCCATGTCGGGGGTGTGTTGAGTGATGTCATGAAGGAGGAGGACTTCTCAGGGAAGGCTGGTCAGGCAACATTTGTTAGGCTTCCTGGTTTTGGGTTTAAGAGAGTGGGATTGATTGGCCTCGGAAAGAATGGGTCTACTTCTTTGACTAAGTCATTGAAAGGGTTTGCGGAGAATCTTGCTGGAGCTGCAAAGACTGCCCAGGCCACCGAAGTGGCTGTGACTTTAGCTTCCACCGAAGATCTTTCTATTTCTTTGAAGCTCAACGCTGTATTGACTATAGCAGCAGGGGTGCTTCTGGGTATTTATGAGGACACTCGTTTCAAGTCAGAGGCAAAGAAGCCTTCATTCCTCAAGTGTTTGGATTTTCTTGGACTTGGCAGTGGTCCTGAGTTTGAACAGAAGTTCAAGTATATCCAGCAAGTTTGTTCTGGAGTTATTCTATCTAGGCAACTTGTAAATGCACCTGCAAACGTAATTACTCCTAGTGCACTTGCAAACGAAGCGTCCAACATTGCCTCTGCTTACAGTGATGTACTCACTGCAAAGATATTGGATGTAGAGCAATGTGAAGAGTTGAAAATGGGATCATATTTAGGAGTGGCTGCAGCATCTGCAAACCCTCCAAAGTTCATTCACCTTTGCTACAAGCCTCCAACTGGAGATGTTAAGACTAAACTTGCCATAGTTGGAAAAGGATTGACATTTGATAGTGGAGGTTACAACATCAAGACAGGACCAGGATGTCTTATTGAACTCATGAAGTTTGACATGGGAGGTTCTGCAGCAGTTCTTGGTGCAGCAAAGGCTATTGGTCAAATTAAACCTCCCGGGGTGGAGGTCCATTTCATTGTTGCTGCATGTGAAAACATGATTAGTGGCACTGGTATGCGGCCTGGTGACATAGTTACAGCTTCAAACGGGAAGACAATTGAGGTAAATAACACGGATGCTGAAGGCAGGTTGACATTGGCAGATGCTTTGGTTTATGCATGTAAACAAGGCGTTCATAAGGTGGTCGATCTTGCAACTCTCACTGGAGCCTGCATAATTGCTCTTGGAAATGAAATTGCTGGAATGTACACTCCTAATGATGAAATGGCAGAAGAAATATCCAAAGCTGCAGAAATTGCAGGAGAAAAGTTTTGGAGAATGCCACTTGAGGAAAGCTATTGGGAATCAATGAAATCTGGGATTGCTGATATGGTGAACACTGGAGGCCGTCAAGGTGGCTCCATCACTGCTGCACTTTTTCTTAAGCAGTTTGTGGATGAAAATGTGCAATGGCTGCATATAGACATGGCTGGACCAGTGTGGAGTGATAAGAAACGTGGTGCAACAGGATTTGCTGTCTCAACCTTGGTTGAATGGGTTGTGGAAAACTCATCATGA___ATACTAGCTGAACAAAAGGGGTTCTGTTGACGTTTATTATTTCAATATTTCTGTGAACATGGTATTATCATCCTAGTTGTCTAAGAGCTTAGAATTAATGTTTATTAATTTTGAGGTTCATATGAAGCTACGTGGGTAGATTCTGTAGGATGCAGGGCTGCTTTATTTTAAATATCTTCTTATTGTGGCACAGATCAACTGGTCTGCTGTATCTTCTTTTCTGGCATGGATTGACTGGTCAAATAAATATGAAGATGGGGGGAGAGTAATAGTATTAAATGTTAATACATTTTTGTAGACTGGAATTGTGGCCCTAGCAGTTAACCATCTGGAATATAAAATAAATTCTTAATAATAAATAAAGGTTTATCAATGT

Fln Alignment:

Contig10255___MASTPLALPRTLAQYLPRSSFLSFKLYQELSLPSSLSHRCSRRFGSS-PKALFQVGFAGLRPKLIWQEQTRKFTAMGAGGVSDITSSAAVTGTNLGLTKPAEVTLPEFTFSAKEIHVTEWKGDILAVGVFENDVTKDESGVFANPTLKKLDSHVGGVLSDVMKEEDFSGKAGQATFVRLPGFGFKRVGLIGLGKNGSTSLTKSLKGFAENLAGAAKTAQATEVAVTLASTEDLSISLKLNAVLTIAAGVLLGIYEDTRFKSEAKKPSFLKCLDFLGLGSGPEFEQKFKYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSDVLTAKILDVEQCEELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKTKLAIVGKGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVHKVVDLATLTGACIIALGNEIAGMYTPNDEMAEEISKAAEIAGEKFWRMPLEESYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSDKKRGATGFAVSTLVEWVVENSS
A9NUY6_______________MASTPLAIPRTLALYLPRSSSLSVKLYQEPSLPSSLLHRRIRPSGSSSPKALFQVGSAGVRPKLIWQVQRRKFIQMGAGGVSDVSSLAAVSEPNLGLTKPAEVTLPELTFSAKEIHVTEWKGDILAVGVFEKDVTKDESGVFENPTLKKLDSHVGGVLSDVIKEEDFSGKAGQAAFVRLPGFGFKRVGLIGLGKNGSASLTKSLKGFAENLAGAAKTAQATEVAVTLSSTEDLSISLKLNSVLTIAAGVLLGIYEDTRFKSETKKP-FLKGLDFLGLGSGPEFEQKFEYIQQVCSGVILSRQLVNAPANVITPSALANEASNIASAYSNVLTAKILDVEQCKELKMGSYLGVAAASANPPKFIHLCYKPPTGDVKIKLAIVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACKQGVDKVVDLATLTGACVVALGNDIAGMFTPNDEMAEEISKAAEIAGEKFWRMPLEENYWESMKSGIADMVNTGGRQGGSITAALFLKQFVDENVQWLHIDMAGPVWSEKKRGATGFAVSTLVEWVLENSS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
2150		91	8		0.999766
2159		8	91		0.999766
2193		5	47		1.0
2194		47	15		1.0
2195		57	26	15	1.0
2196	15	57		26	1.0
2197	26	47	5		1.0
2199			41	58	1.0
2200			87	12	0.992554
2201		87	12		0.992554
2260	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain