SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10188

Length: 2096 nt

UniGene Fasta

>sp_v3.0_unigene10188
AAGCAGCTGGCAACTTGAGTTACAGGGCATCGGGGATGGAATTGGCCGTTGGAAAAGGCATTTGCAGAAGTAGCAAATGTTACTCAAATCAATGGTCTGCTCGTGGTTCTCTTCATCGTCCCCAAGTCCTTCTCTGGTTTCCAAAACTGAACTGTTTCTTTGTGTCTCCTTCACGGAACTGGGCAAAACCTTCTCTATCGGACTGAGGGTATCCTTACATGGTTGGGCTAACACGTGGCTCTTCACCAGCATTTTATCACACGGTTGTCTATTTTCCTCGGAATCTAGTGCAGGTCAAGGGTGTATCCTCTTCACAAACACATTAAACCCGACTCGATCAGCGGGATGTTCGGATTCTGTCCCAAATAGATTTAATTCCAGAGACTCCATATTGCAAAAGCGAATTTCTTGAAGCAGATGGGTCGCGCTAAGATTCCGATAAAATGGATACCGAGACACACTTCAAGGAACATGACATTCATGAAGCGAAAGAAAGGATTGGAGAAGAAGGTAAAGGAGCTAAGCATTCTGTGTGGAGTGGAGGCGTGCATGGTCTGTTTTGGCCCACAGATGGACCAGCAGACCACATCCGACTATCCTGATGTCTGGCCAGGAAAGTCAAAAGCTCTTGAGATCGTTGAGAGATATAGAAACCTTTCAAAAGAAGAGCAAACAAAGAAGAAGCTTGATAACTCCAGCTTCTTGGAGCAGAGGATAAAAAAATTGAAAGTTGAATTGAGTGCCAAAAGGAAGGAAAACAGAGAATTGGAAATGGATGCTGTGTATTCTTGGGATGCATGTTTAAATTATTTTACCATAGAGCAGCTAAAAGATCTTGTGGATTACATAGATATCAGGCTTCAAAATGAACATGACTGAGAATGAATTTTCTCAGTAGAGATGAACGTGAGATTTCCAATGGTGCCAGGCAGCAAATGGAAGATGGCGGTTCGTACAACTCCATGATGCCTTATCAAAGTGGCCATGATAGCTCGGGTTCAACTTTGGATCATTTGAAGCCCTATCTGAGTTTAGAAGGCCACTACAAGGAACTCATGTCTTCTTGCGAGACAGTGGCCATGGATTATTCCAAGGCCAATCCCCCTTTTATAAGAGCTTTTAACGATTATCATGCACCCAATTACAAGGAAGCCATGGACAATGGTGAAGATGATAGGATGGCCGTTTGCAATGCTCATTTGATGGTTAACGAGAGTTTTCCTCTGTTGGGTATTGATGGCGTGAATCCCATCCAGTCAAGCACAGGAAGTTGCTCACAGTGGTGTCGTACCACCACACCCTGCTCTTTGCACAACCCTTTGTATTCTACTTGCCCTCAACATGATGGTATGAATCCCACAATCCAACAAATGCAATTTTCTTATGAGCCTCATTATCAGCAGTGGTTGGATGAGATGACGGAATCACAGGCCATTCAGAGGGTATTAGGAGATGAAGGCATCAATTTCCAAAACGACAGCAGTGTTCGACCTACTCCCCTTCTGTTGAACAGATCTTTGGGAAGCAATGACCATTGTTACATAAAGAACATATTTTGAAACTTCAAAAAACAGGAAAGTCAAGGTGCTGCTCTGATGAGAAATCTAGACCGAAGGAGCTGGTGCATTTTCCCATTCACTCATACGAGGTTGTAGGAATGATACTTTCCATGGATTACTATGTTGTGTTGCAGGACTCCTATTGGGTTCAAATTTAGTGATTTTACTTACACATGCCCAATTTAATAGTGTAGAATAAGTTCAATTTGATGTGGAACTTTTGATGATCTACTACAAGGGAGTCCATTTTGAAGCATACATAGCAATGAATGTATGCTGGTTTTGATTTCTTTAGTGTATTTGGATCCAAGCAAATTTTTCAAGTAAGAGGTTTGTATTCAAGTTTATGGAACTACATTTTCGCTGTATTTATAAAACATATGTTCTAGCGAGTAGTTATTGAGGATCTAAGATAAAATGGTTTATTAAATTACCCAAGATTTTACCTTATAGTGATGGTCTAGGCCTATCTGCCAGTGCCACATGCTCCCTTTTTGTAACAATCTTTGTACACGTTGTTTCATTTTTAAGAAATAT

Ace file of the UniGene sp_v3.0_unigene10188

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type I MADS-box transcription factor n=1 Tax=Cryptomeria japonica RepID=B2ZX88_CRYJA	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Type I MADS-box transcription factor	-	-	4.873e-06	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE40

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 154 - 183

Fln protein: MGRAKIPIKWIPRHTSRNMTFMKRKKGLEKKVKELSILCGVEACMVCFGPQMDQQTTSDYPDVWPGKSKALEIVERYRNLSKEEQTKKKLDNSSFLEQRIKKLKVELSAKRKENRELEMDAVYSWDACLNYFTIEQLKDLVDYIDIRLQNEHD*

Protein Length: 155

Fln nts: AAGCAGCTGGCAACTTGAGTTACAGGGCATCGGGGATGGAATTGGCCGTTGGAAAAGGCATTTGCAGAAGTAGCAAATGTTACTCAAATCAATGGTCTGCTCGTGGTTCTCTTCATCGTCCCCAAGTCCTTCTCTGGTTTCCAAAACTGAACTGTTTCTTTGTGTCTCCTTCACGGAACTGGGCAAAACCTTCTCTATCGGACTGAGGGTATCCTTACATGGTTGGGCTAACACGTGGCTCTTCACCAGCATTTTATCACACGGTTGTCTATTTTCCTCGGAATCTAGTGCAGGTCAAGGGTGTATCCTCTTCACAAACACATTAAACCCGACTCGATCAGCGGGATGTTCGGATTCTGTCCCAAATAGATTTAATTCCAGAGACTCCATATTGCAAAAGCGAATTTCTTGAAGCAG_-_ATGGGTCGCGCTAAGATTCCGATAAAATGGATACCGAGACACACTTCAAGGAACATGACATTCATGAAGCGAAAGAAAGGATTGGAGAAGAAGGTAAAGGAGCTAAGCATTCTGTGTGGAGTGGAGGCGTGCATGGTCTGTTTTGGCCCACAGATGGACCAGCAGACCACATCCGACTATCCTGATGTCTGGCCAGGAAAGTCAAAAGCTCTTGAGATCGTTGAGAGATATAGAAACCTTTCAAAAGAAGAGCAAACAAAGAAGAAGCTTGATAACTCCAGCTTCTTGGAGCAGAGGATAAAAAAATTGAAAGTTGAATTGAGTGCCAAAAGGAAGGAAAACAGAGAATTGGAAATGGATGCTGTGTATTCTTGGGATGCATGTTTAAATTATTTTACCATAGAGCAGCTAAAAGATCTTGTGGATTACATAGATATCAGGCTTCAAAATGAACATGACTGA___GAATGAATTTTCTCAGTAGAGATGAACGTGAGATTTCCAATGGTGCCAGGCAGCAAATGGAAGATGGCGGTTCGTACAACTCCATGATGCCTTATCAAAGTGGCCATGATAGCTCGGGTTCAACTTTGGATCATTTGAAGCCCTATCTGAGTTTAGAAGGCCACTACAAGGAACTCATGTCTTCTTGCGAGACAGTGGCCATGGATTATTCCAAGGCCAATCCCCCTTTTATAAGAGCTTTTAACGATTATCATGCACCCAATTACAAGGAAGCCATGGACAATGGTGAAGATGATAGGATGGCCGTTTGCAATGCTCATTTGATGGTTAACGAGAGTTTTCCTCTGTTGGGTATTGATGGCGTGAATCCCATCCAGTCAAGCACAGGAAGTTGCTCACAGTGGTGTCGTACCACCACACCCTGCTCTTTGCACAACCCTTTGTATTCTACTTGCCCTCAACATGATGGTATGAATCCCACAATCCAACAAATGCAATTTTCTTATGAGCCTCATTATCAGCAGTGGTTGGATGAGATGACGGAATCACAGGCCATTCAGAGGGTATTAGGAGATGAAGGCATCAATTTCCAAAACGACAGCAGTGTTCGACCTACTCCCCTTCTGTTGAACAGATCTTTGGGAAGCAATGACCATTGTTACATAAAGAACATATTTTGAAACTTCAAAAAACAGGAAAGTCAAGGTGCTGCTCTGATGAGAAATCTAGACCGAAGGAGCTGGTGCATTTTCCCATTCACTCATACGAGGTTGTAGGAATGATACTTTCCATGGATTACTATGTTGTGTTGCAGGACTCCTATTGGGTTCAAATTTAGTGATTTTACTTACACATGCCCAATTTAATAGTGTAGAATAAGTTCAATTTGATGTGGAACTTTTGATGATCTACTACAAGGGAGTCCATTTTGAAGCATACATAGCAATGAATGTATGCTGGTTTTGATTTCTTTAGTGTATTTGGATCCAAGCAAATTTTTCAAGTAAGAGGTTTGTATTCAAGTTTATGGAACTACATTTTCGCTGTATTTATAAAACATATGTTCTAGCGAGTAGTTATTGAGGATCTAAGATAAAATGGTTTATTAAATTACCCAAGATTTTACCTTATAGTGATGGTCTAGGCCTATCTGCCAGTGCCACATGCTCCCTTTTTGTAACAATCTTTGTACACGTTGTTTCATTTTTAAGAAATAT

Fln Alignment:

Contig10188___KQMGRAKIPIKWIPRHTSRNMTFMXXXXXXXXXXXXXSILCGVEACMVCFGPQMDQQTTSDYPDVWPGKSKALEIVERYRNLSKEEQTKKKLDNSSFLEQRIKKLKVELSAKRKENRELEMDAVYSWDACLNYFTIEQLKDLVDYIDIRLQNEHD
D5AE40_______________KQMGRAKITIKWIPRDTSGNMTFMKRKKGLKKKVEELSILCGVEVCMVCFGPQMDQQTASDHPHVWPGKSKALEIVERYRSLSKEEQENKKLDNSSFLEQRIKKLKVELSIKRKENRELEMESVYPWDSCLNFFTDEQLKDLVDYIDIRLETVYD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
544	16		83		0.994512
546	16		83		0.994512
548			83	16	0.994512
592		25	75		0.996473
621	75			25	0.996473
1299		66		33	1.0
1473		20		80	0.995493
1660	33		66		0.997452
1665		25	75		0.996473
1666	75		25		0.996473
1668	75	25			0.996473
1669		75	25		0.996473
1671			25	75	0.996473
1672	25			75	0.996473
1675	75			25	0.996473
1679	75	25			0.996473
1685	75	25			0.996473
1686	25			75	0.996473
1697	75			25	0.996473
1819	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain