SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10149

Length: 2904 nt

UniGene Fasta

>sp_v3.0_unigene10149
ATGGGGCTTAATATTTAAACTAAGGCATTTATTTGACATATGCTGCTTAGTCTTCGGGGAAGATTATGTCAATGAACTTCGAATGGCTCATCTGCCTTTCCAAAGCTGGGTAATCATGGAGTTGGGACCTTAAAATGTTTTGGACTGGAGACTCGGGTATGACATCCTGATTTTTCTACGCGTCCCTACAGAAACGGCTCCTGTTCAGGGTTATTCTATCTGCTTTGGGTTTCTCATGCCCAATTCTTTCTGAAAATTGGCTCAATTTGACAGAGCTACACTTCTATAGTTCCAACAGAACAGCATGTGGTGTGGGTTAAAAAATCTGCCTGCATAAGAGGAGAATGTTGAATGCATTGAATTGGGGTTTGTTGAATGCCAGGATTTGAATGCAGGATTTTGAAGATTTCACCAGGGAATGAAGTTGGGAGAAAACCCTTTTGGTTACTGGAAATTTAACACTGGTTGATCATTTCATAACATTTTATTTTGATGTTTTATTGATTTTAATTGGTTCATAGGCAAATCAGAGTATTGGCTATTTTGGGTTTGTTAAAAATCGGACTTTCGGGTTCTGAGGACGCAGTTAAGAGTCTCGCTCTCTGTGACTTGTAAAATTTGAAAATTTTACTACATTTTGTTGTTGGTCGGAGAAAATTGCCTCTGATTGTGGGGGGTGGATTCAAGATTTTGGTCTTGCAAGGGCCATTACAGGCTTTGAATGTAAGAATTCTGGTGGTTGTCATTCTCTGAAGATATTAGCCTAGTGGCAGATTTGGTTGGCAATGGACAGATGACACAAGAAAGAATTGGGTAAATTGGCAAGTTATGATCTGACCAGTCGCAGTTTGAAAACCTCTCACAATGGTCCGAATTGTTGTAGTGACTACAGTATGTTTATCGTTGCTAGTTGTTTTACAGGGCTTTGCCTTGGCAGATTTGATGGTTGGTGCCATCGGAATAAGGCAGCAACTGAGTGCTGAAAAATCTGATCAAGTTGATGCGGCGCCGACTCGGAAATTAGAAACCTCAGGCATTGGAGCATCAGGGAGAGAGGCTGGTAGCGGTGATAGTAGAGATGACATCATCAAGTTTGAGGGACACAAGGATGGAGATAAAAGAGTGCCAGTGTCTACTGTTGCCTGGCTAACATTGGTAATGGCAGCGGCAACAGGCTTTGGTGCAGTGCCTTTCTTCTTTGTAGAAATAGAAGCACAGTGGGCTGGAATATGCAATGGGTTAGCAGCGGGAGTCATGTTGGCAGCAAGCTTTGACCTTGTTCAAGAAGGTCAGGAATACGGCGGTGGCAGCTGGGTTGTAATTGGCATCCTGGCTGGAGGAATTTTCATTTTATGCTGTCAGAAGTGGCTGGAACGATATGGTGAAGTTAGCATGCTAGATATAAAAGGGGCAGATGCCAGAAAGATGGTCCTGGTGGTTGGAATAATGACTCTTCATTCATTTGGCGAAGGTTCAGGTGTTGGAGTCTCCTTTGCAGGCTCAAAAGGACTGTCACAAGGTGTTTTGGTAACTATAGCCATCGCTGTGCACAACATTCCAGAAGGCTTAGCTGTGAGTATGGTTCTGGCATCACGTGGGGTTTCTCCAACCAATGCACTGATATGGAGTGTCATTACGTCCTTGCCACAGCCTCTGGTGGCTGTTCCAGCATTCATATGCGCTGAAGCCTTCCACAAATTCTTGCCATTCTGCATGGGTTTTGCAGCTGGCTGTATGATATGGATGGTAATTGCAGAAGTTGTGCCTGATAGTTTTAAGGAAGCATCTCCATCTCAAGTTGCCACAGCTGCTACACTGGCTGTAGCATTTATGGAGACACTTAGCGCAGTCCTTGAAACATTTGAACATGGACAAAGTTGGAAGAATACATCAGGCTTCCTGGTTTCACTTCTTTTTGGCCTTGGACCTTTCATTGGAGGTCTTATTCTTGTAACATTTGCAAGCTCGGTCAAGATGCAACATTCATTCCTTACAGGAATGGCTTCAGGTATAGCTATTATTTTAGCTGCGTGGAGACCATTGCAGTTATGGGTTGGAGGTAAAATGGGCTTATTCTATGATATAAGCCTGCTTGTGGGAGGTGCTTTTTTCTTTCATGTGATAAGCCGTATGACAAGTCTGAATGTGTTCCAAGGCCGAGCTGCTGGAAATGACATTATGAGGTCAAACACTATAAGTCCTCTTACATTGAAGGCTTTTTTAGCTTGTGGAGCAGTGGCATTGCATGCATTTGCAGAAGGGCTTGCTTTGGGTGTTGCTGCACCTAAAGCTTATGGGCTGGGTAGACATATGATGCTACCTGTCTCTCTCCATGGACTTCCAAGAGGTGCTGCTGTGGCAAGCTGTATATATGGTGCAACAGATAGCTGGCGTAGTGCTCTATTTGCTGCAGCTTTTACGGGGTTTGCTGGTCCACTTGCTGCTATTGGGGCTATTGTGGCAGAAATTGATTACACTGGGCTTGACACGTGGATGGTTTTTGCCTGTGGTGCTTTGCTTCCTGCATTTGGAGGCAGTCTTATCCGTCGCTTTTTCAAGTTAAATTCTAAACATACTTCGTATGGATTGGTGATAGGTCTGGCCTTTGCATTCGTATGCCTCACAAGTACAAGATTAGTTTGCTTGCATACTCCTTATTGCAATTCTGCCCCTGAAGCTGTAACATAAGAAATTTATGCTGGCAAGTCAGAGTTTTTATAGATTCAATACACCCTCTTTTATCACTCAGTTATTGCCAATCTTGCAGCGCCATGGAATAACCTTGTTTATGTCACTGAAAGAAAATGTTGTTTTCGACAAACGATTTTTTGTTTCAAACTATATTCATGTTGCACCAAGTTTGGTACATTTATGAAAACTGTAGCAGAGTCCATACCTTTATTA

Ace file of the UniGene sp_v3.0_unigene10149

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ZIP metal ion transporter-like protein [Arabidopsis thaliana] sp\|Q9C9Z1.2\|ZTP50_ARATH RecName: Full=Putative zinc transporter At3g08650 gb\|AEE74659.1\| ZIP metal ion transporter-like protein [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Sma3	Zinc permease family	-	-	1.015e-07	-

Source	Gene names
Sma3	At3g08650; CHLREDRAFT_196638; GSVIVT00033649001; MICPUCDRAFT_13879; MICPUN_56999; OSJNBa0065C11.1; OSTLU_86026; Os05g0316100; OsI_19433; OsJ_18031; Ot01g00740; PHYPADRAFT_203300; POPTRDRAFT_577221; POPTRDRAFT_589614; RCOM_0126280; THAPSDRAFT_268980; VITIS

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	phosphorylation	GO:0016310	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3		IPR000173	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3		IPR008512	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08650.2	ZIP metal ion transporter family chr3:2624694-2627308 REVERSE LENGTH=619	66%
RefSeq	Arabidopsis thaliana	NP_187477.1	ZIP metal ion transporter-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002326428.1	ZIP transporter [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Y4

Fln msg: your sequence is longer than subject: 608 - 275

Fln protein: MVRIVVVTTVCLSLLVVLQGFALADLMVGAIGIRQQLSAEKSDQVDAAPTRKLETSGIGASGREAGSGDSRDDIIKFEGHKDGDKRVPVSTVAWLTLVMAAATGFGAVPFFFVEIEAQWAGICNGLAAGVMLAASFDLVQEGQEYGGGSWVVIGILAGGIFILCCQKWLERYGEVSMLDIKGADARKMVLVVGIMTLHSFGEGSGVGVSFAGSKGLSQGVLVTIAIAVHNIPEGLAVSMVLASRGVSPTNALIWSVITSLPQPLVAVPAFICAEAFHKFLPFCMGFAAGCMIWMVIAEVVPDSFKEASPSQVATAATLAVAFMETLSAVLETFEHGQSWKNTSGFLVSLLFGLGPFIGGLILVTFASSVKMQHSFLTGMASGIAIILAAWRPLQLWVGGKMGLFYDISLLVGGAFFFHVISRMTSLNVFQGRAAGNDIMRSNTISPLTLKAFLACGAVALHAFAEGLALGVAAPKAYGLGRHMMLPVSLHGLPRGAAVASCIYGATDSWRSALFAAAFTGFAGPLAAIGAIVAEIDYTGLDTWMVFACGALLPAFGGSLIRRFFKLNSKHTSYGLVIGLAFAFVCLTSTRLVCLHTPYCNSAPEAVT*

Protein Length: 609

Fln nts: ATGGGGCTTAATATTTAAACTAAGGCATTTATTTGACATATGCTGCTTAGTCTTCGGGGAAGATTATGTCAATGAACTTCGAATGGCTCATCTGCCTTTCCAAAGCTGGGTAATCATGGAGTTGGGACCTTAAAATGTTTTGGACTGGAGACTCGGGTATGACATCCTGATTTTTCTACGCGTCCCTACAGAAACGGCTCCTGTTCAGGGTTATTCTATCTGCTTTGGGTTTCTCATGCCCAATTCTTTCTGAAAATTGGCTCAATTTGACAGAGCTACACTTCTATAGTTCCAACAGAACAGCATGTGGTGTGGGTTAAAAAATCTGCCTGCATAAGAGGAGAATGTTGAATGCATTGAATTGGGGTTTGTTGAATGCCAGGATTTGAATGCAGGATTTTGAAGATTTCACCAGGGAATGAAGTTGGGAGAAAACCCTTTTGGTTACTGGAAATTTAACACTGGTTGATCATTTCATAACATTTTATTTTGATGTTTTATTGATTTTAATTGGTTCATAGGCAAATCAGAGTATTGGCTATTTTGGGTTTGTTAAAAATCGGACTTTCGGGTTCTGAGGACGCAGTTAAGAGTCTCGCTCTCTGTGACTTGTAAAATTTGAAAATTTTACTACATTTTGTTGTTGGTCGGAGAAAATTGCCTCTGATTGTGGGGGGTGGATTCAAGATTTTGGTCTTGCAAGGGCCATTACAGGCTTTGAATGTAAGAATTCTGGTGGTTGTCATTCTCTGAAGATATTAGCCTAGTGGCAGATTTGGTTGGCAATGGACAGATGACACAAGAAAGAATTGGGTAAATTGGCAAGTTATGATCTGACCAGTCGCAGTTTGAAAACCTCTCACA_-_ATGGTCCGAATTGTTGTAGTGACTACAGTATGTTTATCGTTGCTAGTTGTTTTACAGGGCTTTGCCTTGGCAGATTTGATGGTTGGTGCCATCGGAATAAGGCAGCAACTGAGTGCTGAAAAATCTGATCAAGTTGATGCGGCGCCGACTCGGAAATTAGAAACCTCAGGCATTGGAGCATCAGGGAGAGAGGCTGGTAGCGGTGATAGTAGAGATGACATCATCAAGTTTGAGGGACACAAGGATGGAGATAAAAGAGTGCCAGTGTCTACTGTTGCCTGGCTAACATTGGTAATGGCAGCGGCAACAGGCTTTGGTGCAGTGCCTTTCTTCTTTGTAGAAATAGAAGCACAGTGGGCTGGAATATGCAATGGGTTAGCAGCGGGAGTCATGTTGGCAGCAAGCTTTGACCTTGTTCAAGAAGGTCAGGAATACGGCGGTGGCAGCTGGGTTGTAATTGGCATCCTGGCTGGAGGAATTTTCATTTTATGCTGTCAGAAGTGGCTGGAACGATATGGTGAAGTTAGCATGCTAGATATAAAAGGGGCAGATGCCAGAAAGATGGTCCTGGTGGTTGGAATAATGACTCTTCATTCATTTGGCGAAGGTTCAGGTGTTGGAGTCTCCTTTGCAGGCTCAAAAGGACTGTCACAAGGTGTTTTGGTAACTATAGCCATCGCTGTGCACAACATTCCAGAAGGCTTAGCTGTGAGTATGGTTCTGGCATCACGTGGGGTTTCTCCAACCAATGCACTGATATGGAGTGTCATTACGTCCTTGCCACAGCCTCTGGTGGCTGTTCCAGCATTCATATGCGCTGAAGCCTTCCACAAATTCTTGCCATTCTGCATGGGTTTTGCAGCTGGCTGTATGATATGGATGGTAATTGCAGAAGTTGTGCCTGATAGTTTTAAGGAAGCATCTCCATCTCAAGTTGCCACAGCTGCTACACTGGCTGTAGCATTTATGGAGACACTTAGCGCAGTCCTTGAAACATTTGAACATGGACAAAGTTGGAAGAATACATCAGGCTTCCTGGTTTCACTTCTTTTTGGCCTTGGACCTTTCATTGGAGGTCTTATTCTTGTAACATTTGCAAGCTCGGTCAAGATGCAACATTCATTCCTTACAGGAATGGCTTCAGGTATAGCTATTATTTTAGCTGCGTGGAGACCATTGCAGTTATGGGTTGGAGGTAAAATGGGCTTATTCTATGATATAAGCCTGCTTGTGGGAGGTGCTTTTTTCTTTCATGTGATAAGCCGTATGACAAGTCTGAATGTGTTCCAAGGCCGAGCTGCTGGAAATGACATTATGAGGTCAAACACTATAAGTCCTCTTACATTGAAGGCTTTTTTAGCTTGTGGAGCAGTGGCATTGCATGCATTTGCAGAAGGGCTTGCTTTGGGTGTTGCTGCACCTAAAGCTTATGGGCTGGGTAGACATATGATGCTACCTGTCTCTCTCCATGGACTTCCAAGAGGTGCTGCTGTGGCAAGCTGTATATATGGTGCAACAGATAGCTGGCGTAGTGCTCTATTTGCTGCAGCTTTTACGGGGTTTGCTGGTCCACTTGCTGCTATTGGGGCTATTGTGGCAGAAATTGATTACACTGGGCTTGACACGTGGATGGTTTTTGCCTGTGGTGCTTTGCTTCCTGCATTTGGAGGCAGTCTTATCCGTCGCTTTTTCAAGTTAAATTCTAAACATACTTCGTATGGATTGGTGATAGGTCTGGCCTTTGCATTCGTATGCCTCACAAGTACAAGATTAGTTTGCTTGCATACTCCTTATTGCAATTCTGCCCCTGAAGCTGTAACATAA___GAAATTTATGCTGGCAAGTCAGAGTTTTTATAGATTCAATACACCCTCTTTTATCACTCAGTTATTGCCAATCTTGCAGCGCCATGGAATAACCTTGTTTATGTCACTGAAAGAAAATGTTGTTTTCGACAAACGATTTTTTGTTTCAAACTATATTCATGTTGCACCAAGTTTGGTACATTTATGAAAACTGTAGCAGAGTCCATACCTTTATTA

Fln Alignment:

Contig10149___VSTVAWLTLVMAAATGFGAVPFFFVEI----EAQWAGICNGLAAGVMLAASF-DLVQEGQEYGGGSWVVIGILAGGIFILCCQKWL--------ERYGEVSMLDIKGADA----RKMVLVVGIMT---LHXXXXXXXXXXXXXXXXXLSQGVLVTIAIAVHNIPEGLAVSMVLASRGVSPTNALIWSVITSLPQPL-VAVPAFICAEAFH-KFLPFCMGFAAGCMIWMVIAEVVPDSFKEASPSQVATAATLAVAFMETLSAVLE
A9P0Y4_______________VMVALMLSLVGGASTSLGAL---FVVINPAPKLKVLGLLQGFAAGLMLSISFLDLAHNAINSIGFLKANLWFFGGVVVFAFIVNFIPEPTLVPSQNQADTSEKYDGGKDLMKKHRRQVFYSGIITAIGISLHNFPEGMAVFLGSIKGLRVGLNLALAIALHNIPEGIAVALPVYFATESKWQAFKLASLSGLAEPLGVVLVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAIKAVFIGMAVMSTSLYFLE

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
142		33	66		0.997452
145	20	80			0.995493
148			80	20	0.995493
180		20	80		0.995493
184		80		20	0.995493
270	80	20			0.995493
310	20		80		0.995493
320	20	20			0.99255
450	33	66			0.997452
453			66	33	0.997452
464	33	66			0.997452
574	33		66		0.997452
648		33	66		0.997452
651		66		33	0.997452
690	60	40			1.0
698		60	40		1.0
745	40			60	1.0
823	20		80		0.995493
835		40		60	1.0
836	40	60			1.0
838			60	40	1.0
1879	88		11		0.923564
2010		87		12	0.992554
2135		57		42	1.0
2141	57		42		1.0
2228		33		66	0.997452
2377	83	16			0.994512
2378	16			83	0.994512
2493	85		14		0.993533
2521			18	81	1.0
2523		18		81	1.0
2525		81		18	1.0
2526			18	81	1.0
2527	18			81	1.0
2532		81	18		1.0
2533	81	18			1.0
2535			18	81	1.0
2538		18	81		1.0
2540		18	81		1.0
2541			81	18	1.0
2714		38		61	1.0
2856		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain