SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10133

Length: 1998 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10133
GAATGAAGTAACTATCTTGATACCCATGAAATGAACTGAAACTTCAAGGATTTTGTTTGGTGGAAGTGTTTCACTCAGTGGCGGGGAAGTCGCTCGATATAAGTGGAAGTAGTAGCGGAAAGAGGAACGCTCAATTGATTCAACGGAAGCATAGAAAGCGGGGAGAGCAAACAGAGGCAAACAAAGGGAGAACAGAATTGATTTGGAATTGAAATTGGGTGAAGATGGATTGGGAAGAAAGCACGGAGGGGAACGTTGTGGGTGAGAGTAACAAGAAGAGTGTAATCAGCAGCGAGCAGATGGACGTGGAGGCTTATGGCTCTCTGTACAGCGGGAGGACAAAGATAACGCGTTTAATCTTCATCGCTGACCACTGCGGCAATGAGAGCATGAGGGTGGAGGCCCTGCGGATGGCCTACGATGAGATCAAGAAGGGCGACAACACCCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGGCTTTTTCCACGGATGGCGATTTAGGAGGTTGTTCGGTCCCAAGGTTTCCAAAGTCTGCTGGCCTGCTTAAGTTTTGAGTATTTACTTCTGATGCTCATTTCCCCAAGTCAAGATTGTTCACAGCGTTATTCATGAATGTTTCCAATAGGGAAATCAATTATTCTTCCAATGAACTGGTGAAGCCATGGTTCAGTTGATATCAGTCCTGTATTGTACTTGGTAATTTTGGAAATTTTATTTTTCAGTTAGAGCTCATCTTGGTAAAGACTGAGCAATAAGTGCTGACAAGAATGAGTTTATTCAAGGTGATTATGAGTTGATGCTTTGAGGATGCTGTTTCTTTCATTCTCTAATCATAATTTCGGTTTGGTTCTTTGTTAAACTGATCTATTTTGTTTGAGAGGCACTATATACATCTTTTCAATTGTGTTTTTCAGCTCAAGCAACTCTTAACTGCACCTGCTAAAATGAAAAATTTGCTTAATAACAAGCAAATCTCATGCAAAA

Ace file of the UniGene sp_v3.0_unigene10133 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp\|P45432.2\|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb\|AAK2	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	COP9 signalosome complex subunit 1	-	-	4.617e-09	-

Source	Gene names
Sma3	At3g61140; CHLREDRAFT_194712; COP11; COP9-like; CSN1; FUS6; GSVIVT00026238001; LOC_Os03g02540; MICPUCDRAFT_3283; MICPUN_78447; MtrDRAFT_AC160924g12v1; Os03g0116500; OsI_09737; OsJ_09174; Ot04g00135; PHYPADRAFT_178664; PHYPADRAFT_197994; POPTRDRAFT_710292;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein complex assembly	GO:0006461	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	cullin deneddylation	GO:0010388	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61140.1	" FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain chr3:22626335-22628895 FORWARD LENGTH=441"	75%
RefSeq	Arabidopsis thaliana	NP_567109.1	COP9 signalosome complex subunit 1 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002320757.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg:

Fln protein: MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQPVVVAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRAFSTDGDLGGCSVPRFPKSAGLLKF*

Protein Length: 449

Fln nts: GAATGAAGTAACTATCTTGATACCCATGAAATGAACTGAAACTTCAAGGATTTTGTTTGGTGGAAGTGTTTCACTCAGTGGCGGGGAAGTCGCTCGATATAAGTGGAAGTAGTAGCGGAAAGAGGAACGCTCAATTGATTCAACGGAAGCATAGAAAGCGGGGAGAGCAAACAGAGGCAAACAAAGGGAGAACAGAATTGATTTGGAATTGAAATTGGGTGAAG_-_ATGGATTGGGAAGAAAGCACGGAGGGGAACGTTGTGGGTGAGAGTAACAAGAAGAGTGTAATCAGCAGCGAGCAGATGGACGTGGAGGCTTATGGCTCTCTGTACAGCGGGAGGACAAAGATAACGCGTTTAATCTTCATCGCTGACCACTGCGGCAATGAGAGCATGAGGGTGGAGGCCCTGCGGATGGCCTACGATGAGATCAAGAAGGGCGACAACACCCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGGCTTTTTCCACGGATGGCGATTTAGGAGGTTGTTCGGTCCCAAGGTTTCCAAAGTCTGCTGGCCTGCTTAAGTTTTGA___GTATTTACTTCTGATGCTCATTTCCCCAAGTCAAGATTGTTCACAGCGTTATTCATGAATGTTTCCAATAGGGAAATCAATTATTCTTCCAATGAACTGGTGAAGCCATGGTTCAGTTGATATCAGTCCTGTATTGTACTTGGTAATTTTGGAAATTTTATTTTTCAGTTAGAGCTCATCTTGGTAAAGACTGAGCAATAAGTGCTGACAAGAATGAGTTTATTCAAGGTGATTATGAGTTGATGCTTTGAGGATGCTGTTTCTTTCATTCTCTAATCATAATTTCGGTTTGGTTCTTTGTTAAACTGATCTATTTTGTTTGAGAGGCACTATATACATCTTTTCAATTGTGTTTTTCAGCTCAAGCAACTCTTAACTGCACCTGCTAAAATGAAAAATTTGCTTAATAACAAGCAAATCTCATGCAAAA

Fln Alignment:

Contig10133___MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTXXXXXXXXXVAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMR
D5AC30_______________MDWEESTEGNVVGEGNKKSVISSEQMDVEAYGSLYSGRTKIMRLIFIADHCGNESMRMEALRMAYDEIKKGDNTQLFKEVTHKIGGKLGSDYALDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQEQVVVVAKLKCAAGLAHLENKKYKLAARKFVETNFDLGNNYTDVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLHTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
206		11	88		0.923564
207	88	11			0.923564
241		12		87	0.992554
247		87		12	0.992554
730		42		57	1.0
871			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain