SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10106

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10106
CTGTCGAAAGGTAGATCGGAAGGTTATTGGAACAGAAGCATCCAGGTTGTGTTTGGAGGGTCCATGGATCACTAAATCTTATCTGGAAATGATTATGGCAAAGCAAGGTGTTCCACGTTTAAGTACACCTCCACTTCCTTCAGCATACTTTGGGGCTTCACCTTCAGTCCCTTCAAATGTTTCAGACAGGGCTATCATTTCTCCTCGTCCAGTCAGGTTAAGGCCAGTACCTTCTCGCAAGATGCCTGATATGGCAGAGCCTTGGACCAGATCTCCAACAAAATCTGAGATGGAGCCTGTGGTTGCATCATGGCATGTAGTCAACACTTTAGGGTCAGTAGAGAATTCCGTAAATACCTTTGCAGATTCTTCTGCTTTCAGGGATGCTATACAGTTGGTGCCTATGCCTGATTCATGTGATTTAGACAGGGGTTTACTACTTGCTGTGCAGGCTATTCAGACTCTACTAGATGCCA

Ace file of the UniGene sp_v3.0_unigene10106 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	52%

Source	Gene names
Sma3	At2g01460; GSVIVT00030501001; POPTRDRAFT_231866; POPTRDRAFT_564619; RCOM_0843510; VITISV_036875;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:206136-211765 FORWARD LENGTH=955	4.0e-37	48%
RefSeq	Arabidopsis thaliana	NP_001189495.1	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	5.0e-37	48%
RefSeq	Populus trichocarpa	XP_002311502.1	predicted protein [Populus trichocarpa]	3.00004e-41	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HJB7

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 158 - 516

Fln protein: CRKVDRKVIGTEASRLCLEGPWITKSYLEMIMAKQGVPRLSTPPLPSAYFGASPSVPSNVSDRAIISPRPVRLRPVPSRKMPDMAEPWTRSPTKSEMEPVVASWHVVNTLGSVENSVNTFADSSAFRDAIQLVPMPDSCDLDRGLLLAVQAIQTLLDA

Protein Length: 159

Fln nts: CTGTCGAAAGGTAGATCGGAAGGTTATTGGAACAGAAGCATCCAGGTTGTGTTTGGAGGGTCCATGGATCACTAAATCTTATCTGGAAATGATTATGGCAAAGCAAGGTGTTCCACGTTTAAGTACACCTCCACTTCCTTCAGCATACTTTGGGGCTTCACCTTCAGTCCCTTCAAATGTTTCAGACAGGGCTATCATTTCTCCTCGTCCAGTCAGGTTAAGGCCAGTACCTTCTCGCAAGATGCCTGATATGGCAGAGCCTTGGACCAGATCTCCAACAAAATCTGAGATGGAGCCTGTGGTTGCATCATGGCATGTAGTCAACACTTTAGGGTCAGTAGAGAATTCCGTAAATACCTTTGCAGATTCTTCTGCTTTCAGGGATGCTATACAGTTGGTGCCTATGCCTGATTCATGTGATTTAGACAGGGGTTTACTACTTGCTGTGCAGGCTATTCAGACTCTACTAGATGCCA

Fln Alignment:

Contig10106___RKVDRKVIGTEASRLCLEGPWITKSYLEMIMAKQGVPRLSTPPLPSAYFGASPSVPSNVSDRAIIXXXXXXXXXXXXRKMPDMAEPWTRSPTKSEMEPVVASWHVVNTLGS-----VENSVNTFADSSAFRDAIQLVPMPDSCDLDRGLLLAVQAIQTLLD
B9HJB7_______________RGTDRKTVGAEAMRIGVNGPWITKSYLELILERKGVPRLNTPPLL-----PNTSTTSN-QERAIVAPRPIRTTPNLVNRLEDLSQPWTRSPTKSKMEPMVETWHFTSSDTSHGSSVIEVSHEATTDSSTCRDNMKLAPLPDSYDLDRGLLLAVQAIQALLE

SNPs (tot: 4)

Position	A %	G %	T %	Probability
273	16	83		0.994512
385	80	20		0.995493
406	60	40		1.0
462		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain