SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10091

Length: 2450 nt

UniGene Fasta

>sp_v3.0_unigene10091
TACTTATTGGGATAGACATCTTCGGAGGCGTGACATAGTGCAAAACATACCGGGCAGCTATAGAATATTTAGCAGGTGCTTTCCGCGTGAGGACCCTTAGGGACAATCGGATGGGCTGCCCTGCCACCTACCTTCCTGCAGTCTGTCTATCTATAAATACAATACCAAGGCCTTTGCTGTAATTTGAATCAATCACACCAGCCTGGTCACTCACCATATCTTCAATCTGTGTGGCAGAGTTGCAGGATTTCGCACTTCAGGCGAAACCATGAATGGAGATTGCAAGCCCAATGCTGCTGCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGCGAAGATAGGGCTTCAGAAGAGCAGGTTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCACAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCACATGTCACAAGAACTTCAAGTGAAGCGTTTAATGCATCTTATTCGTCAATACAATACACCCTTGCAGAAGTACATGGCTTTGATGGATCTTGAGGAGAGGAACGAAAGGTTATTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCCACAGTGGGAGAAGCTTGCCAAAAATATGGAACTATTTTTAGGCGTCCACAGGGCCTTTACATAAGCTTAAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGGAACTGGCCTGAAAAGAACATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGGGACCTTGGATGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTCTACACGGCACTTGGTGGAATCCGCCCTTCTGAGTGCCTTCCAATAACAATTGACGTGGGGACTAACAATGAGATGCTGCTAAATGATGAGTTCTACATAGGAATGAAGCAGAAGCGTGCTACAGGCCAGGAATATGATGATCTTCTTGATGAGTTTATGTATGCCGCCAAACAAGCTTTTGGAGAGAAAGTCCTTATCCAGTTTGAAGATTTTGCGAATCACAATGCCTTCAAATTGCTTGAAAAGTATAGATCAACACACTTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTGCAGGCCTTGTCGCATCATTAAAATTGACTGGTGGAACATTGGCTGACCACACCTTCCTATTCCTTGGTGCTGGTGAGGCAGGGACAGGTATTGCAGAGCTTATAGCATTGGAAATAACCAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAATAGGATATGGTTGGTGGACTCTAAGGGACTCATTGTGAAGTCAAGAATGGAGTCTCTTCAACCCTTCAAGAAGCCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATCGGTTCATCGGGGGCTGGAAGAACTTTCACAAAGGAAGTGATTGAAACTGTTTCCTCTTTCAATGAGAAGCCAGTGATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACAGCAGAAGAAGCATACACTTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTGATGGGAAGACCTTTATTCCTGGCCAGTCCAACAATGCCTATATTTTCCCCGGATTGGGTTTAGGCTTGGTAATTTCAGGAACAATTCGTGTGCATGAAGATATGCTATTGGCAGCCTCTGAGGCTTTAGCTGAACAAGTTACCAAAGAGCATCTCGATCAAGGGCTCATTTACCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAAGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATACCTTCCTCGTCCTGCTGATCTGGTAGCTTTTGCTGAGAGCTGTATGTACAGTCCAACTTATAGGAATTATAAATGAGATAAAATTTCTCACAGCCCAAACTGGGCAGAGTTTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAAGAGTCTGCAAAAACTATTTCAAGAATATGCTAATGTCAGTGTTTTGATGGCAATTTTAAAGAATCTACGCCATTGATTTTGTTAATGTAGCAATTCAATTCCTTGTTCATTGGAATGGAGGAACATTACTTGCCATGGTCGGAGGGATGAGAATGGAAATTCTTACTTGAGAGGAACGAAAGTAGAGAGATATCTTTTTTATATGAAACAGACTTCAGAGTTCCTTGAAAAGAAACAACCTTATTTTTTAATATAAGTATTTATTCGTTAATGAGTATTTATTTATTGGTAATGACTCAGTTTGTTTTATAAACTATAAATACACAAGTGTCATGTTGGAAATTGGAC

Ace file of the UniGene sp_v3.0_unigene10091

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malic enzyme n=1 Tax=Picea sitchensis RepID=B8LRQ8_PICSI	-	-	94%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Malic enzyme	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79750.1	ATNADP-ME4, NADP-ME4 NADP-malic enzyme 4 chr1:30007655-30011179 REVERSE LENGTH=646	75%
RefSeq	Arabidopsis thaliana	NP_178093.1	NADP-malic enzyme 4 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002298241.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRQ8

Fln msg:

Fln protein: MNGDCKPNAAATVAGGVHDVYGEDRASEEQVITPWSRTVASGYVLLRDPRYNKGLAFTDDERDYHYVRGLLPPAHMSQELQVKRLMHLIRQYNTPLQKYMALMDLEERNERLFYKLMIDHVEELLPIVYTPTVGEACQKYGTIFRRPQGLYISLKEKGKVHDVLRNWPEKNIKVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSECLPITIDVGTNNEMLLNDEFYIGMKQKRATGQEYDDLLDEFMYAAKQAFGEKVLIQFEDFANHNAFKLLEKYRSTHLVFNDDIQGTASVVLAGLVASLKLTGGTLADHTFLFLGAGEAGTGIAELIALEITKQGKISLNEARNRIWLVDSKGLIVKSRMESLQPFKKPWAHEHEPCKGLLDAVKSIRPTILIGSSGAGRTFTKEVIETVSSFNEKPVILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVSIDGKTFIPGQSNNAYIFPGLGLGLVISGTIRVHEDMLLAASEALAEQVTKEHLDQGLIYPPFRNIRKISAHIAARVAAKSYELGLATYLPRPADLVAFAESCMYSPTYRNYK*

Protein Length: 583

Fln nts: TACTTATTGGGATAGACATCTTCGGAGGCGTGACATAGTGCAAAACATACCGGGCAGCTATAGAATATTTAGCAGGTGCTTTCCGCGTGAGGACCCTTAGGGACAATCGGATGGGCTGCCCTGCCACCTACCTTCCTGCAGTCTGTCTATCTATAAATACAATACCAAGGCCTTTGCTGTAATTTGAATCAATCACACCAGCCTGGTCACTCACCATATCTTCAATCTGTGTGGCAGAGTTGCAGGATTTCGCACTTCAGGCGAAACC_-_ATGAATGGAGATTGCAAGCCCAATGCTGCTGCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGCGAAGATAGGGCTTCAGAAGAGCAGGTTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCACAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCACATGTCACAAGAACTTCAAGTGAAGCGTTTAATGCATCTTATTCGTCAATACAATACACCCTTGCAGAAGTACATGGCTTTGATGGATCTTGAGGAGAGGAACGAAAGGTTATTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCCACAGTGGGAGAAGCTTGCCAAAAATATGGAACTATTTTTAGGCGTCCACAGGGCCTTTACATAAGCTTAAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGGAACTGGCCTGAAAAGAACATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGGGACCTTGGATGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTCTACACGGCACTTGGTGGAATCCGCCCTTCTGAGTGCCTTCCAATAACAATTGACGTGGGGACTAACAATGAGATGCTGCTAAATGATGAGTTCTACATAGGAATGAAGCAGAAGCGTGCTACAGGCCAGGAATATGATGATCTTCTTGATGAGTTTATGTATGCCGCCAAACAAGCTTTTGGAGAGAAAGTCCTTATCCAGTTTGAAGATTTTGCGAATCACAATGCCTTCAAATTGCTTGAAAAGTATAGATCAACACACTTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTGCAGGCCTTGTCGCATCATTAAAATTGACTGGTGGAACATTGGCTGACCACACCTTCCTATTCCTTGGTGCTGGTGAGGCAGGGACAGGTATTGCAGAGCTTATAGCATTGGAAATAACCAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAATAGGATATGGTTGGTGGACTCTAAGGGACTCATTGTGAAGTCAAGAATGGAGTCTCTTCAACCCTTCAAGAAGCCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATCGGTTCATCGGGGGCTGGAAGAACTTTCACAAAGGAAGTGATTGAAACTGTTTCCTCTTTCAATGAGAAGCCAGTGATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACAGCAGAAGAAGCATACACTTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTGATGGGAAGACCTTTATTCCTGGCCAGTCCAACAATGCCTATATTTTCCCCGGATTGGGTTTAGGCTTGGTAATTTCAGGAACAATTCGTGTGCATGAAGATATGCTATTGGCAGCCTCTGAGGCTTTAGCTGAACAAGTTACCAAAGAGCATCTCGATCAAGGGCTCATTTACCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAAGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATACCTTCCTCGTCCTGCTGATCTGGTAGCTTTTGCTGAGAGCTGTATGTACAGTCCAACTTATAGGAATTATAAATGA___GATAAAATTTCTCACAGCCCAAACTGGGCAGAGTTTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAAGAGTCTGCAAAAACTATTTCAAGAATATGCTAATGTCAGTGTTTTGATGGCAATTTTAAAGAATCTACGCCATTGATTTTGTTAATGTAGCAATTCAATTCCTTGTTCATTGGAATGGAGGAACATTACTTGCCATGGTCGGAGGGATGAGAATGGAAATTCTTACTTGAGAGGAACGAAAGTAGAGAGATATCTTTTTTATATGAAACAGACTTCAGAGTTCCTTGAAAAGAAACAACCTTATTTTTTAATATAAGTATTTATTCGTTAATGAGTATTTATTTATTGGTAATGACTCAGTTTGTTTTATAAACTATAAATACACAAGTGTCATGTTGGAAATTGGAC

Fln Alignment:

Contig10091___MNGDCKPNAAATVAGGVHDVYGEDRASEEQVITPWSRTVASGYVLLRDPRYNKGLAFTDDERDYHYVRGLLPPAHMSQELQVKRLMHLIRQYNTPLQKYMALMDLEERNERLFYKLMIDHVEELLPIVYTPTVGEACQKYGTIFRRPQGLYISLKEKGKVHDVLRNWPEKNIKVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSECLPITIDVGTNNEMLLNDEFYIGMKQKRATGQEYDDLLDEFMYAAKQAFGEKVLIQFEDFANHNAFKLLEKYRSTHLVFNDDIQGTASVVLAGLVASLKLTGGTLADHTFLFLGAGEAGTGIAELIALEITKQGKISLNEARNRIWLVDSKGLIVKSRMESLQPFKKPWAHEHEPCKGLLDAVKSIRPTILIGSSGAGRTFTKEVIETVSSFNEKPVILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVSIDGKTFIPGQSNNAYIFPGLGLGLVISGTIRVHEDMLLAASEALAEQVTKEHLDQGLIYPPFRNIRKISAHIAARVAAKSYELGLATYLPRPADLVAFAESCMYSPTYRNYK
B8LRQ8_______________MNGDSKSTGAATLAGGVHDVYGEDRASEEQIVTPWSRTVASGNVLLRDPRYNKGLAFTDDERDYHYVRGLLPPAHMSQELQEKRLMHIIRQYNTPLQKYMALMDLEERNERLFYKLMIDHVEELLPIVYTPTVGEACQKYGTIFRRPQGLYISLKEKGKVYDVLRNWPEKNIKVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSECLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYDDLLNEFMYAAKKAYGEKVLIQFEDFANHNAFNLLAKYRSTHLVFNDDIQGTASVVLSGLVASLKLTGGTLADHTFLFLGAGEAGTGIAELIALEMTKQGKISLNEARKRIWLVDSKGLIVKSRMESLQHFKKPWAHEHEPCKGLLDAVKSIRPTILIGSSGVGRTFTKEVIETVSSFNEKPVILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVSINGKTFIPGQSNNAYIFPGLGLGLVISGTIRVHEDMLLAASEALAQQVSKEHLEQGLIYPPFRNIRKISAHIAAGVAAKSYELGLATRLPRPADLVAFAESCMYSPVYRNYK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2303		4		65	1.0
2341	86		13		0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain