SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10086

Length: 1499 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10086

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NIN like protein 7 [Arabidopsis thaliana] sp\|Q84TH9.2\|NLP7_ARATH RecName: Full=Protein NLP7; Short=AtNLP7; AltName: Full=NIN-like protein 7; AltName: Full=Nodule inception protein-like protein 7 gb\|AAB63621.1\| unknown protein [Arabidopsis thaliana] emb\|CA	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	RWP-RK domain containing protein, expressed	-	-	1.681e-12	-

Source	Gene names
Sma3	AT4g24020; At1g20640; At1g64530; At1g76350; At2g17150; At2g43500; At3g59580; At4g24020; F15M4.15; G9008; GSVIVT00002881001; GSVIVT00002882001; GSVIVT00006691001; GSVIVT00006692001; GSVIVT00034609001; GSVIVT00036264001; H9-8; LOC_Os03g03900; LOC_Os11g16290

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24020.1	NLP7 NIN like protein 7 chr4:12479904-12483822 FORWARD LENGTH=959	61%
RefSeq	Arabidopsis thaliana	NP_194133.1	NIN like protein 7 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002299449.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7X9

Fln msg: Distance to subject end: 642 aas, your sequence is shorter than subject: 419 - 753

Fln protein: MAEKTRVDKSFNVLWQQKKRPKMEDWEAWIEETGLSSLSPLQSAVASPPSPAPFNMSDGEGDLSLRKRMMQALKYIKDSESTEQNVLAQVWVPVRQGAKHMLTTCGQPFVVASSNGVLFQYRNVSSTYLFSAGEEGEDEEEGDGDGCGHSHALVGLPGRVFRQKLPEWTPNVQYYTVNEYPRVAHAQHYNVQGSLALPVFEPRGQSCVGVVELVMTAQKINYGPDVDKVCRALQAVNLRSSDYLDHPQLQICNEGRQAALAEILAVLTAVCEAHKLPLAQTWVPCRHQNIINTGGGKKKNCASFDGSCMGQVCMSTIDSAFYVVDAHMWGFRDACTEHHLQKGQGLPGKAFASNQPCFSNDISSFSKMQYPLVHYTHLFNLAAAVAIRLRSTHSGNDDYILEFFLPPDCKDSQKIQMLL

Protein Length: 420

Fln nts: CAGAATCTAGTTAGCACTATTTTCCAATATGTTGTGCAGTGACGATGGCAAGCTTGAGCAACATCCACGGATGGAAATACGTTAAACCCTGAGCAGAACTCTCCAATCGAATCGGAGCTCGGACGGCTGATTTCGCAGCAGCTTCAATGGAATCCACTCGGCCATTAGAGAAAGAAGAAGAGACAAGGGGCTGTGGGTCCTTTTGATTAAGAATTTAATATATAATTTTGAAACGCTGGGG_-_ATGGCGGAGAAGACGAGGGTTGACAAGAGTTTTAATGTTTTATGGCAGCAGAAGAAGAGACCAAAAATGGAGGACTGGGAGGCATGGATAGAGGAGACTGGCTTGTCCTCGCTAAGCCCGCTGCAGTCAGCTGTCGCCTCTCCGCCTTCCCCTGCACCGTTCAACATGTCGGATGGGGAGGGAGATCTCTCGTTGAGGAAGAGAATGATGCAGGCGTTGAAGTACATAAAGGATTCTGAGTCGACCGAGCAGAATGTGCTGGCGCAGGTGTGGGTGCCCGTTAGACAGGGGGCTAAACACATGCTCACTACCTGCGGGCAGCCCTTCGTTGTGGCCTCTTCCAACGGCGTTCTCTTCCAGTACCGTAATGTATCATCGACTTATCTCTTCTCGGCAGGGGAAGAAGGGGAGGATGAGGAGGAAGGTGACGGTGACGGGTGCGGGCACTCCCACGCGCTTGTCGGCCTGCCTGGGAGGGTTTTCCGGCAGAAATTGCCCGAATGGACGCCCAATGTGCAGTACTACACCGTGAACGAATACCCTCGTGTCGCTCATGCTCAGCACTATAATGTTCAGGGGAGTTTGGCTCTTCCGGTGTTTGAGCCCCGGGGTCAGTCTTGCGTCGGCGTGGTGGAGCTCGTCATGACTGCGCAGAAGATAAATTATGGCCCCGATGTGGACAAGGTTTGCAGAGCCCTCCAGGCTGTTAATTTGAGAAGCTCGGATTACTTGGACCACCCACAGTTGCAGATATGTAATGAGGGTCGCCAAGCTGCACTAGCTGAGATTTTAGCTGTATTAACCGCAGTTTGTGAGGCACATAAATTGCCGTTGGCTCAGACTTGGGTTCCATGCAGGCATCAAAATATCATCAATACTGGGGGTGGCAAGAAGAAAAATTGTGCGAGTTTTGATGGAAGTTGCATGGGACAAGTCTGTATGTCTACAATTGATTCAGCATTCTATGTAGTTGATGCTCACATGTGGGGATTTCGAGATGCATGTACTGAGCACCATTTGCAGAAAGGGCAGGGTCTCCCTGGAAAGGCATTTGCATCCAATCAACCATGCTTTTCCAATGATATCAGCAGCTTCAGCAAGATGCAATATCCGCTAGTGCACTATACACACTTGTTTAACTTAGCAGCTGCGGTTGCTATTCGCCTTCGAAGCACCCACTCTGGCAATGATGACTATATATTGGAGTTCTTTTTGCCCCCAGACTGCAAAGACAGTCAGAAGATACAAATGTTGTTGA

Fln Alignment:

Contig10086___MGQVCMSTIDSAFYVVDAHMWGFRDACTEHHLQKGQGLPGKAFASNQPCFSNDISSFSKMQYPLVHYTHLFNLAAAVAIRLRSTHSGNDDYILEFFLPPDCKDSQKIQMLL
D5A7X9_______________MGQVCMSTIDSAFYVIDAHMWGFRDACTEHHLQKGQGLPGKAFASNQPSFSNDISSFSKTEYPLVHYARLFNLAAAVAIRLRSTHTGNDDYILEFFLPTDCKDSQNLQMLL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
299	87	12			0.992554
383		87	12		0.992554
488		33	66		0.997452
751	83		16		0.994512
858			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain