SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10078

Length: 1016 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10078

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer subunit beta, putative n=1 Tax=Ricinus communis RepID=B9RNM4_RICCO	-	-	0.0	84%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Coatomer subunit beta	-	-	1.39e-12	-

Source	Gene names
Sma3	At4g31480; At4g31490; BCOP; CHLREDRAFT_195438; COP2; COPB1; COPbeta; F3L17.50; F3L17.60; GSVIVT00025293001; GSVIVT00032317001; LOC_Os01g17430; LOC_Os11g07280; MICPUCDRAFT_32783; MICPUN_104806; OSJNBa0036E02.23; OSJNBa0055G24; OSJNBb0063D09; OSTLU_49385; O

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Coatomer, beta subunit, C-terminal	IPR011710	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Coatomer beta subunit	IPR016460	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31480.1	Coatomer, beta subunit chr4:15264145-15267384 FORWARD LENGTH=948	78%
RefSeq	Arabidopsis thaliana	NP_001190880.1	coatomer subunit beta-1 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002324951.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: Distance to subject end: 691 aas, your sequence is shorter than subject: 257 - 948

Fln protein: MEKSCSLLIHFDKGNPAMVNEIKESLEGNDVTLKIEAMKKAVMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLIPSVLANLEHRHPYIRRNAILAMMSIYKLPQGEQLLVDAPEMIEKALGTEQDLSAKRNAFLMLFNCAQERAIGYLIQNLEAVPKWGDLLQMVVLELIRKVCRSNPAEKGKYIKINNFVAEFVFDR

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATGTATGAAATGATTGGTCAGCCCCAACCGAAATCGTACGAAAACCTATGACGCAATCGATTCTAAGATCTACTCCCCTCGGGGACAAAATTGCAGGGTAGTTCTTAGAAGAACTCTGAAACTTGGTTTCTTTGCATTTTCAATCGACCGAAGGCCCTGGCCGACTCAAACCCCAGATCAGGTTTTGCTGAAGCCCTAGAAACTTTCGCTGTCAAACAAA_-_ATGGAGAAATCCTGTAGTCTGCTGATCCACTTCGACAAGGGGAATCCGGCCATGGTGAACGAGATTAAAGAATCCCTGGAAGGAAATGACGTCACGCTCAAGATCGAGGCAATGAAGAAGGCCGTAATGCTCCTCTTGAATGGAGAGACTCTCCCGCAACTCTTCATCACCATAGTGAGGTATGTACTCCCCTCAGAAGACCACACCATACAGAAATTGCTCCTCTTATATTTGGAAATCATTGACAAAACCGACTCCAAGGGCAAGGTCCTGCCGGAGATGATCCTCATTTGTCAAAACCTCCGAAATAACCTCCAGCACCCTAATGAGTACATCAGGGGTGTAACCCTTAGGTTTCTGTCTAGATTAAATGAGAGCGAGCTGATTGAGCCCCTGATACCCTCTGTTCTGGCTAATTTAGAGCACCGCCATCCCTACATTAGGCGGAATGCTATTCTGGCGATGATGTCCATATACAAGCTGCCGCAGGGAGAGCAGCTGCTGGTCGATGCACCAGAGATGATAGAAAAGGCCCTGGGGACAGAACAAGATCTGTCTGCCAAGCGAAATGCGTTCTTGATGTTGTTCAATTGCGCTCAGGAGCGTGCGATCGGTTACCTTATTCAGAACCTGGAGGCCGTGCCGAAATGGGGTGATTTGTTGCAGATGGTTGTTCTCGAGTTGATAAGGAAGGTCTGCAGGTCGAATCCTGCGGAGAAGGGGAAATACATCAAAATCAATAATTTCGTTGCTGAATTCGTCTTCGACCGCG

Fln Alignment:

Contig10078___MEKSCSLLIHFDKGNPAMVNEIKESLEGNDVTLKIEAMKKAVMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLIPSVLANLEHRHPYIRRNAILAMMSIYKLPQGEQLLVDAPEMIEKALGTEQDLSAKRNAFLMLFNCAQERAIGYLIQNLEAVPKWGDLLQMVVLELIRKVCRSNPAEKGKYIKI
C0PR52_______________MEKSCSLLIHFDKGNPAMANEIKESLEGNDVERKIEALKKAIMLLLNGDSLPQLFITIVRYVLPSEDHTIQKLLLLYLEIVDKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLSRLNESELIEPLVPSVLANLEHRHPYIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLATEQDLSAKRNAFLMLFNCAQERAIGYLIRNLDAVPKWGDLLQMVVLELIRKVCRSNPAEKGKYIKI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
237			75	25	1.0
264		25		75	1.0
442			83	16	0.994512
443	83			16	0.994512
444	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain