SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10074

Length: 1005 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10074

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell wall invertase n=1 Tax=Musa acuminata RepID=Q84XV1_MUSAC	-	-	0.0	65%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 1; Daucus carota (Carrot).	-	-	0.0	73%
Sma3	Beta-fructofuranosidase	-	-	1.306e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.4.1.10-	-	4.865e-23	-
Sma3	Sucrose:sucrose fructosyltransferase.	EC:2.4.1.99	-	5.138e-10	-
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3		EC:3.2.1.8-	-	1.045e-12	-

Source	Gene names
Sma3	1-FEH; 1-FEH w1; 1-FEH w3; 1-feh; 1-feh IIa; 1-feh IIb; 6-feh; A211; AI; AI-2; AIV-1; AT3G13790; At1g12240; At1g55120; At1g62660; At1g62660/T3P18.21; At2g36190; At3g13784; At3g13790; At3g52600; At5g11920; BFRUCT1; BFRUCT2; BIN35; BIN44; Beta-fruct; C311;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	1,2-beta-fructan 1F-fructosyltransferase activity	GO:0047207	Molecular Function	-
Sma3	sucrose 1F-fructosyltransferase activity	GO:0050306	Molecular Function	-
Sma3	fructan beta-fructosidase activity	GO:0051669	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13790.1	ATCWINV1, ATBFRUCT1 Glycosyl hydrolases family 32 protein chr3:4533084-4535831 REVERSE LENGTH=584	57%
RefSeq	Arabidopsis thaliana	NP_566464.1	beta-fructofuranosidase [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002323420.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P26792

Fln msg: Separated hits, possible frame ERROR between 443 and 461, Distance to subject end: 250 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 323 - 592

Fln protein: MGSSVRRVLIHAIAIAWLWLSISARASHVMHAVNTTSTRVEQRYRTAYHFQPKKNWMNDPNAPMFYKGFYHLFYQYNPYGAVWGNIVWGHVVSKDLIHWRSLEPAIVPSEWYDIKGCWSGSATLLPGDKPAILYTxxxxxxxQLQSMVVPKDASDPLLREWVKIPQNPLLIPKFGINGSSFRDPTTGWLGHDGKWRILVGNKRNRRGVALLFKSKDFVHWMKAKHPLHSSELTGMWECPDFYPVPLYGNQGLDTSAIGHSLKHVLKVSLDDYKYDYYTVGTYLRDMDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRR

Protein Length: 324

Fln nts: CTTTCGCTTTCGCCCGCCTTACGAAAAAGTACAGA_-_ATGGGATCATCGGTTAGACGGGTTTTGATCCATGCGATAGCTATCGCATGGCTGTGGTTAAGCATTTCTGCGCGGGCTTCCCATGTGATGCATGCTGTTAACACAACGAGCACAAGAGTTGAACAGCGGTATCGCACAGCCTACCATTTTCAGCCTAAGAAAAACTGGATGAACGACCCTAATGCGCCAATGTTCTACAAGGGATTCTACCATCTCTTCTACCAGTATAATCCTTATGGAGCAGTGTGGGGAAATATTGTCTGGGGGCATGTCGTTTCAAAGGATCTCATTCACTGGCGTTCACTGGAGCCTGCCATTGTTCCGAGTGAATGGTATGATATAAAGGGCTGCTGGTCCGGTTCGGCAACGTTACTGCCCGGAGACAAGCCTGCGATTCTGTACACAGGxxxxxxxxxxxxxxxxxxACAGCTGCAGAGCATGGTTGTTCCTAAGGATGCCTCTGATCCTCTTCTGAGGGAATGGGTAAAGATCCCTCAGAATCCTCTTTTGATTCCAAAATTTGGAATCAATGGGAGCTCATTCAGGGATCCCACCACCGGATGGCTTGGCCACGATGGAAAATGGAGGATTCTGGTTGGAAATAAGAGGAATCGGAGAGGAGTGGCTTTGTTATTCAAAAGCAAGGACTTCGTTCACTGGATGAAGGCCAAGCATCCTCTACATTCGTCGGAATTGACCGGAATGTGGGAATGTCCTGACTTTTACCCTGTTCCTCTTTATGGGAACCAAGGATTAGACACGTCCGCTATTGGGCATTCACTTAAACATGTTTTGAAGGTGAGTCTCGACGATTACAAGTACGATTATTATACAGTGGGAACTTACTTGCGGGACATGGATCGATACGTCCCAGACAATACCAGTAGTGATGACGAAAATGGGTTAAGGTACGACTATGGCAAATTCTATGCTTCCAAAACATTTTTTGATCAAAATAAGCAGAGGCGAAT

Fln Alignment:

Contig10074___VEQRYRTAYHFQPKKNWMNDPNAPMFYKGFYHLFYQYNPYGAVWGNIVWGHVVSKDLIHWRSLEPAIVPSEWYDIKGCWSGSATLLPGDKPAILYTGxxxxxxQLQSMVVPKDASDPLLREWVKIPQNPLLIPKFGINGSSFRDPTTGWLGHDGKWRILVGNKRNRRGVALLFKSKDFVHWMKAKHPLHSSELTGMWECPDFYPVPLYGNQGLDTSAIGHSLKHVLKVSLDDYKYDYYTVGTYLRDMDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRR
P26792_______________VKQVHRTGYHFQPKQNWINDPNGPMYYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDLINWTPLEPAIFPSKPFDKYGCRSGSATILPGNKPVILYTGxxxxxxQVQNYAIPANLSDPYLRKWIKPDNNPLVVANNGENATAFRDPTTAWLDKSGHWKMLVGSKRNRRGIAYLYRSKDFIKWTKAKHPIHSQANTGMWECPDFFPVSLKGLNGLDTSVTGESVKHVLKVSLDLTRYEYYTVGTYLTDKDRYIPDNTSVDGWAGLRYDYGNFYASKTFFDPSKNRR

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
572		66		33	0.997452
593		70		30	1.0
607	80			20	0.999996
627		70	30		1.0
629	10		90		0.90298
644	11		88		0.923564
647	11			88	0.923564
649	22		77		0.999999
650		22	77		0.999999
656	87		12		0.992554
663		12		87	0.992554
670	12			87	0.992554
673	87		12		0.992554
689		12		87	0.992554
696	75		25		1.0
704	12	87			0.992554
716	87		12		0.992554
726	12		87		0.992554
775	80	20			0.999996
782	10	90			0.90298
783		80	20		0.999996
788	90		10		0.90298
789		10		90	0.90298
800	10	90			0.90298
805			10	90	0.90298
811	90			10	0.90298
887	11		88		0.923564
891	88		11		0.923564
905	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain