SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10072

Length: 2291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene10072
AATGTCTGGTTAAGTTGTGGTCTTTCGTTATTTCCTCGTATGGGGGAGACGAGTAGGCGAGTATCATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAGTAAAAATCGGCAAAATTGGCTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTACCAGAGGTTAAAGAAGATCAAGTTTTAATTAAAGTCTGCGCTGCGGCACTCAATCCTGTCGATTTTAAGAGGCGGCAAGGGAAATTTAAAGCCACCGACTCTCCACTTCCCACAGTCCCGGGCTATGACGTTGCTGGCATAGTGATAAAAGTAGGTAGCAAAGTGGAAGGGTTCAAAGAAGGTGATGAAGTGTATGGAGACATACATGAAAAAGCTCTAGATAACCCCAAGCAATATGGTTCACTTGGTGAATACACAGCTGTAGAAGAGAAGTTGATAGCTTTAAAGCCAAAAAACCTAGATTTCGCTCAGGCAGCAAGTCTTCCTCTTGCAATTGAAACTGCATATGAAGGCCTTGAAAGAACAGGTTTTGGTCCTGGAAAATCCATTCTTGTGTTAGGAGGTGCAGGTGGAGTAGGCAGTCTTGTCATACAGTTAGCAAGAAAAGTCTTTGGTGCATCAACCATAGCTGCAACTTCAAGCACTGGGAAACTGGAATTCTTGAAGAGCTTGGGAACTGATATTGCCATTGATTACACTAAGCAAAATTTTGAAGAACTGCCTGAGAAGTATGATGTCATTTATGATACCGTTGGGCAATGTGACAAGGCAGTGAAGGCAGTAAAAGGAGGAGGAAGCGTTGTGGCTTTGACTGGAGCTGTGACACCCCCAGGTTTCAGATTTGTGGTCACCTCAAATGGCTCAGTTCTTTCCAAACTGAATCCATATTTAGAAAGTGGAGAAATAAAACCTATTATTGATCCAAAAGGCCCCTTTTCCTTCTCCCAATTGGTTGAAGCCTTTTCCTACCTTGAAACATGCAGAGCTACTGGTAAAGTGGTCATTTCTCCCATTCCTTGAAATACGAACATCAAGTTTGATCCTTGTCATATTGGCATGGTATCTTACAGAGCTGATAGGGTAGAATATCATTTTAACTGGAACTATTCAGATTCTTCTATATTATTGGTTCAGCATAATATAGAAGTTTTATGTGACTTGGTTTCTCTTCTAAACCCTAAGCCCATGCTCAATATGTCTTCCATGATGGATGCAATGGAACCACATTACGCAGAGACGCTGGGATCATCAGCAGAGTTGTATGTAGATAGAGAACTTTACGGTATTGTTAAGAATAACTTCAAGGTCCATGCAATACTTTCATGCGTTTCCACTCGTTCCATGAGGTTTGTTCCGAATGGCCCTAACAGTTGCTTAGATTCGGTATTAACATCAAAGCACCTTCAAAATAAAGGCATGCAAATTTCTCAGACAGGATGCACCAAGATGTCACATTAATTTTCAGAGCCACGGCATTCTGAATGGGCGTGGGAGATGTATAACCATATTCCTATAATTTCTCTTGGTTAATGTTTAATGTTAATTTCGAAGGCTTTTTCTGGGTCTTGCACATTAAATTCAAGATTATTTAGCCTCTGTCTGTATAGACAGAGTCTTTGCATTCAGGGCACCTTTTTCGGATTCCATTTTATAACGAATTTAATATTTCAGTTGGTAGATTTATTAGATTTATTGTTTTACAATTGTGGTTTTTATTTTCTATAAACATGATGAACATATTACAAAGATGGTTTATTATAAGTCATTCCAACTCTATCTTTCCAGCATGATTTCTTGGTTTATATGTTCTATGCGTTGCAGTTGAGACTATCTGCTCATGTGCATACTTCATTATTATAAATCTTAGAAAAGGGAGGTGAACCAGTATAGCCTCTGCGATTTTTGTGTCGAACATGATCTAGTCCAAAAGGAGAAAGTGTTGACCCAAATTGTAATCCATCTAATAATTTAGTAGACCTCTCTGGCAATCTTTGTAAGCAGTCCATCAGGCAAAAGTATTAGTTGCATGTGATTGCATGTCCATCAGGC

Ace file of the UniGene sp_v3.0_unigene10072 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SHB0_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein chr1:8398245-8399656 REVERSE LENGTH=386	68%
RefSeq	Arabidopsis thaliana	NP_173786.1	quinone oxidoreductase-like protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002323668.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVP5

Fln msg:

Fln protein: MDTVAATTVTACIYRNSFPRARGAYDINSQVKIGKIGFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDIHEKALDNPKQYGSLGEYTAVEEKLIALKPKNLDFAQAASLPLAIETAYEGLERTGFGPGKSILVLGGAGGVGSLVIQLARKVFGASTIAATSSTGKLEFLKSLGTDIAIDYTKQNFEELPEKYDVIYDTVGQCDKAVKAVKGGGSVVALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGPFSFSQLVEAFSYLETCRATGKVVISPIP*

Protein Length: 400

Fln nts: AATGTCTGGTTAAGTTGTGGTCTTTCGTTATTTCCTCGTATGGGGGAGACGAGTAGGCGAGTATC_-_ATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAGTAAAAATCGGCAAAATTGGCTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTACCAGAGGTTAAAGAAGATCAAGTTTTAATTAAAGTCTGCGCTGCGGCACTCAATCCTGTCGATTTTAAGAGGCGGCAAGGGAAATTTAAAGCCACCGACTCTCCACTTCCCACAGTCCCGGGCTATGACGTTGCTGGCATAGTGATAAAAGTAGGTAGCAAAGTGGAAGGGTTCAAAGAAGGTGATGAAGTGTATGGAGACATACATGAAAAAGCTCTAGATAACCCCAAGCAATATGGTTCACTTGGTGAATACACAGCTGTAGAAGAGAAGTTGATAGCTTTAAAGCCAAAAAACCTAGATTTCGCTCAGGCAGCAAGTCTTCCTCTTGCAATTGAAACTGCATATGAAGGCCTTGAAAGAACAGGTTTTGGTCCTGGAAAATCCATTCTTGTGTTAGGAGGTGCAGGTGGAGTAGGCAGTCTTGTCATACAGTTAGCAAGAAAAGTCTTTGGTGCATCAACCATAGCTGCAACTTCAAGCACTGGGAAACTGGAATTCTTGAAGAGCTTGGGAACTGATATTGCCATTGATTACACTAAGCAAAATTTTGAAGAACTGCCTGAGAAGTATGATGTCATTTATGATACCGTTGGGCAATGTGACAAGGCAGTGAAGGCAGTAAAAGGAGGAGGAAGCGTTGTGGCTTTGACTGGAGCTGTGACACCCCCAGGTTTCAGATTTGTGGTCACCTCAAATGGCTCAGTTCTTTCCAAACTGAATCCATATTTAGAAAGTGGAGAAATAAAACCTATTATTGATCCAAAAGGCCCCTTTTCCTTCTCCCAATTGGTTGAAGCCTTTTCCTACCTTGAAACATGCAGAGCTACTGGTAAAGTGGTCATTTCTCCCATTCCTTGA___AATACGAACATCAAGTTTGATCCTTGTCATATTGGCATGGTATCTTACAGAGCTGATAGGGTAGAATATCATTTTAACTGGAACTATTCAGATTCTTCTATATTATTGGTTCAGCATAATATAGAAGTTTTATGTGACTTGGTTTCTCTTCTAAACCCTAAGCCCATGCTCAATATGTCTTCCATGATGGATGCAATGGAACCACATTACGCAGAGACGCTGGGATCATCAGCAGAGTTGTATGTAGATAGAGAACTTTACGGTATTGTTAAGAATAACTTCAAGGTCCATGCAATACTTTCATGCGTTTCCACTCGTTCCATGAGGTTTGTTCCGAATGGCCCTAACAGTTGCTTAGATTCGGTATTAACATCAAAGCACCTTCAAAATAAAGGCATGCAAATTTCTCAGACAGGATGCACCAAGATGTCACATTAATTTTCAGAGCCACGGCATTCTGAATGGGCGTGGGAGATGTATAACCATATTCCTATAATTTCTCTTGGTTAATGTTTAATGTTAATTTCGAAGGCTTTTTCTGGGTCTTGCACATTAAATTCAAGATTATTTAGCCTCTGTCTGTATAGACAGAGTCTTTGCATTCAGGGCACCTTTTTCGGATTCCATTTTATAACGAATTTAATATTTCAGTTGGTAGATTTATTAGATTTATTGTTTTACAATTGTGGTTTTTATTTTCTATAAACATGATGAACATATTACAAAGATGGTTTATTATAAGTCATTCCAACTCTATCTTTCCAGCATGATTTCTTGGTTTATATGTTCTATGCGTTGCAGTTGAGACTATCTGCTCATGTGCATACTTCATTATTATAAATCTTAGAAAAGGGAGGTGAACCAGTATAGCCTCTGCGATTTTTGTGTCGAACATGATCTAGTCCAAAAGGAGAAAGTGTTGACCCAAATTGTAATCCATCTAATAATTTAGTAGACCTCTCTGGCAATCTTTGTAAGCAGTCCATCAGGCAAAAGTATTAGTTGCATGTGATTGCATGTCCATCAGGC

Fln Alignment:

Contig10072___MDTVAATTVTACIYRNSFPRARGAYDINSQVKIGKIGFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDIHEKALDNPKQYGSLGEYTAVEEKLIALKPKNLDFAQAASLPLAIETAYEGLERTGFGPGKSIXXXXXXXXXXXXVIQLARKVFGASTIAATSSTGKLEFLKSLGTDIAIDYTKQNFEELPEKYDVIYDTVGQCDXXXXXXXXXXXXXALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGPFSFSQLVEAFSYLETCRATGKVVISPIP
A9NVP5_______________MDTFAATTITARTCINSFPRAGGADDVQSHVKFGKIGFGWNQRGQSSYKLRHKSSNRTRGSRGVSVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPVPEVKEDQVLIKVCAAALNPVDFKRRQGKFKATDSPLPTVPGYDVAGIVIKVGSKVEGFKEGDEVYGDINEKALDNPKQYGSLGEYTAVEEKLVALKPKNLDFTQAASLPLAILTAYEGLERAGFGPGKSILVLGGAGGVGSLVIQLARKVFGASTIAATSSTGKLEFLKSLGTDISIDYTKQNFEELPEKYDVIYDAVGQCDKAVKAIKGGGSVVALTGAVTPPGFRFVVTSNGSVLSKLNPYLESGEIKPIIDPKGSFSFSQLVEAFSYLETCRATGKVVISPIP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
2249		88	11		0.923564
2250	11	66	22		0.999999
2251		66		11	0.999999
2252	12	12	12		0.962769
2253	87		12		0.992554
2254	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain