SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10068

Length: 1328 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10068

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj\|BAB10366.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL31194.1\| AT5g61030/maf19_30 [Arabidopsis thaliana] gb\|AAM78058.1\| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj\|BAH30642.1\| hypo	-	-	1.0e-32	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61030.1	GR-RBP3 glycine-rich RNA-binding protein 3 chr5:24560870-24562152 FORWARD LENGTH=309	7.0e-39	60%
RefSeq	Arabidopsis thaliana	NP_200911.1	glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]	9.0e-39	60%
RefSeq	Populus trichocarpa	XP_002318570.1	predicted protein [Populus trichocarpa]	8.99999e-40	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ72

Fln msg:

Fln protein: MSFASKVGGLLRQSISGRLGFNETRSVPSIYHALRYMSSSRLFIGGISYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFVSFTSNEEAAAAIAAMDGKDLHGRLVHVNYATERTGGFRSGGGGYGGGGYSQNDGYGTGSGGGGGYSQNDGYGTGSGGYSQNDGYGTGGGYGQNDGNASGGSYSQSQSDGYGTSGAGYDGTSEGRSTGGTKDDFGYDDKVGNMDKGY*

Protein Length: 234

Fln nts: TTGGTCTACCTATACTTCCACTTTCCACCGGAAGCTTGTTGAAGTTTCCATTGCTAGAGTATATCTAAACCGGAAATCTTACGGCCATGGGGAGTCTAAAGCGTTGCATCAACGGCCAGGACTAATCCTATCGGACGGGGTTTATTCATCTCTGTTCCAGATCGACGTTCAGGAGGGTTGCTGGATTTATGGGCATTTGGATATTTGCAGGGTCTATTTAACGTTTGGTTTCGAAAAGGGTTTTGGGTTTAAGCATATATTGTCTTCGGCCCTATTGCAATCATCTTCAGCACAAGGGAAAAAAGCTTGCTGGGTATAGTAGTTATATCAAACA_-_ATGTCCTTTGCAAGCAAAGTTGGAGGCCTCTTACGGCAAAGTATCTCTGGCCGTCTGGGCTTTAATGAAACTAGATCAGTGCCATCTATCTACCATGCTTTGAGATACATGTCCTCGTCAAGGCTTTTTATTGGAGGTATATCTTACGGCATGGATGACCAATCTCTAAGAGAGTCATTCACTGAATATGGTGAAGTCATTGAAGCGAGAATCATTCATGACCGGGAGACTGGTCGGTCAAGAGGCTTCGGTTTTGTTAGTTTCACTTCTAACGAGGAGGCTGCAGCCGCCATAGCAGCCATGGATGGAAAGGATCTTCATGGACGTCTTGTTCATGTTAACTATGCTACTGAAAGAACTGGAGGTTTTCGTTCTGGTGGTGGTGGTTATGGTGGTGGTGGCTACAGTCAGAATGATGGATACGGAACTGGTAGTGGTGGTGGTGGTGGCTACAGTCAGAATGATGGATACGGAACTGGTAGTGGTGGCTACAGTCAGAATGATGGGTATGGAACTGGTGGTGGCTACGGTCAGAACGATGGGAATGCAAGTGGTGGTAGCTACAGTCAGAGTCAGAGTGATGGGTATGGGACCAGCGGTGCTGGGTATGATGGAACATCTGAGGGTAGAAGCACAGGCGGAACTAAAGATGATTTTGGCTATGATGATAAAGTTGGCAATATGGACAAGGGATACTAG___GCCATTCTTTCTTGAACATTTTTTGCATCGAATTGAGTTGAGTGACATCACTCCTCTAATCAGGCCTGACGTCTTGTAGAGTTTCGTTTATTGAACTGCCATATTTGTTCATGCAGTTTTAGCTCTATTATATGCATCTTGATGCTTAAATATTATGAATCAGCATGCAGCATATTGCACTTACGATTGTTTTCATTTCTAGCGTAATTAATGTATACTAAATTTTGTTACAGAAGGTAAACTGTTTCGTTCTCAAAATAACATTTTTCAAAAAAACCTATGAAGTGCTTTAGTG

Fln Alignment:

Contig10068___MSFASKVGGLLRQSISGRLGFNETRSVPSIYHALRYMSSSRLFIGGISYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFVSFTSNEEXXXXXXXMDGKDLHGRLVHVNYATERT
A9NZ72_______________MSFASKVGSLLRQGISGRLGFNETRSVPSIYHALRYMSSSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAAITGMDGKDLHGRLVHVNYATERT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
214			25	75	0.996473
771	12		87		0.999964
1043		7		92	1.0
1121	1			94	0.999831
1217	91	8			1.0
1247	2		97		0.97849
1250		2		97	0.979771
1251	85		11	2	1.0
1252		96		3	0.983282
1259		3		96	0.991164
1286	4	95			0.997494
1302	6	31	6	56	1.0
1305	75		25		0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
709	721	TGG TGG TGG TGG T	13
724	735	TGG TGG TGG TGG	12
768	783	GTG GTG GTG GTG GTG G	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain