SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10032

Length: 1444 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10032

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative phi-1	-	-	8.878e-18	-

Source	Gene names
Sma3	131L1.11; AT4g08950; At1g35140; At1g35140/T32G9_32; At4g08950; At4g08950/T3H13.3; At5g09440; At5g09440/T5E8_240; At5g64260; EXO; GSVIVT00006171001; GSVIVT00015200001; GSVIVT00015201001; GSVIVT00015203001; GSVIVT00015204001; GSVIVT00015212001; GSVIVT000152

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	49%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ56

Fln msg:

Fln protein: MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSKPSASAWWKTTEKYVGAASNKAEPSSVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVKSRSLPLPRPRPLHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGCAATCGGTTTTCACTTGTCGCCTATTTGTGTTTTCACCTTGTGTTTGTAACAAGCTATCGAGGTTACTGTGGTTTGTTCCTCTGAATCCAAGGGAGCTCGCGTCTCTTTGCTGTGTGATAGATAGAGAGCGTTAAA_-_ATGGCTTGTTCTTTTTCTTGGCTTCGACTGTCTGCCTTGCTACATATAGCGGTGTGTATAGTGATATTATCTGCAGTCCCTGCTTCTGGACAGTCGAGAAAACTTGGGGCTTTGGTGGAAGGGCCATCTGTTGTCTTGACTTACCACGATGGTCCTCTGCTCTCTGCCAGTGGATTGACCCAACTCCACGTAATCTGGTATGGGAAATTCACCCCTGTTCAACGCTCCATTGTGGGGGATTTTCTTCAATCTCTTGGAGCAGTGGCGTTAGAGGGGACAAGAAGTAAACCCTCCGCGTCTGCTTGGTGGAAGACCACTGAGAAGTATGTGGGCGCAGCCTCTAACAAGGCGGAGCCTTCCAGTGTTATAATGCTAGGAAAGCAGAAGGTAGACCAAGATTATTCCCTCGGCAAGTCACTCAAGAGGGCTGACATTGCTTCTCTAGTTGAAGCTGCTGTTAAGTCGAGATCTCTGCCTCTGCCTCGGCCTCGGCCTCTACACGAGAATAAAGCGACAAAAGAAAATGCTGTATACTTGGTGCTTACCTCTGAGGATGTTGCCGTTGAGGGTTTCTGCATGAGTTCCTGCGGATTCCATGACAGTCTCAATGTATTATCACACCAGAAGGCAACAAGAAACCGAACGACGGGGAAGGAGAAGGAGAAGGAGCCTCGTCATCTTTTACCATACGCGTGGGTTGGGAACTCTGCAAGTCAGTGTCCTGGACAGTGCGCATGGCCATTTCATCAACCCATGTATGGACCCCAGACTCCCCCTTTGGTGGCACCAAACGGTGACATGGGTATCGATGGGATGATAATCAACATTGCCACCGTTCTTGCAGGAGCAGCTACTAATACATTTAACAACGGCTATTTTCAAGGGGACTCTGCTGCGCCTCTAGAGGCGGTGTCTGCCTGTACGGGAATATATGGAAAGGGGGCTTATCCTGGGTTTCCCGGTGAGCTATTAGTTGATAAAATGACGGGGGCAAGCTATAACTCCCATGGAGTTAATGGGAGAACATTTTTGTTACCAGCTATGTGGGATCCTGCTACCAGAACTTGCGAGACATTAGTATGA___ACATTTTTGTAATTTCAAGTCTGGGATTTTAAAAGGAAGCATGAACGTAGAGTTAGGTGCATAGGGTGCAGCGTTTCTGCAGATAGAATCTTAAATATGTATTCTTTATTCTTTACACAGGGTTTTAAAGCAAATTCTTTTTGTTTCTATTCGTTTCAAAAGGGGGAAAACTATGTTTTCGTTTGAATGTGTAGCAG

Fln Alignment:

Contig10032___MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSK-PSASAWWKTTEKYVGAASNKAEPS------SVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVKXXXXXXXXXXXXHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPXXXXXXXXXXXXXATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV
B8LQ56_______________MAGYVSWPRLTAMLQMVVCMAILCSSPAAGHLRKLAALVEEPSVVLTYHDGPLLSTSGVIPVHLIWYGKFTPVQRTIVGDFLQSLGAKTLEGTNAKLPSASTWWKTTEKYEGAASNKAAPSNKAAPSSVIMLGKQKVDQDYSLGNSLKRSDIAALVQAAVKSGAVPLP------KSNAGNANAVYLVLTSEDVTVEGFCMSSCGFHGSLNLLPHQQSTKSRMMGKEEKHQ--QLLPYAWVGNSASQCPGQCAWPFHQPIYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNPFNSGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELLVDKTTGASYNAHGVNGRQFLLPAMWDPATKSCQALV

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1400	33	13		1.0
1405		16	83	0.994512
1410		16	83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
815	833	GAAGGA GAAGGA GAAGGA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain