SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10025

Length: 2188 nt

UniGene Fasta

>sp_v3.0_unigene10025
CGTCGTGACCGTCGTGACCTCAACTCTCATCTTTATCTTCTTTCATTAGCGCAATTTCATTCCCCTTTTTGGCTCCTTCGGAGCTCGCGCAGATTACAGAGAAACCCTAGTCTCGTGGATTCTCGATCGAAATCTGCACGGCCTGTATACAGTCTTAGCACATTCACTGAGCTGCCATAGGTTTCTTGGAACTCTTTGTTCCGCGGCTCTTGCGAGTTTCGCAGGATTTTGTTTGATTGTATTTTGAGGGTTTTTCTTTGCTTCGAGGGTTTTGTTTTCCCGTTTTTGTCCCCTTATTCTTTCAAGACATCTCAGAATGATGCAGCCAACCGTAGGTGTCGCTCCTCCCCCTCCTGTTGCTGCACCCGCGATCGATCCCCAGCAGCAGCAACAGCAGTGGATGATGATGCAGCAGCAGATGCAGCCTCAGCAGCCTCAGCCTCAGCCGCCTCCTCAGGCTGGGTTTTGGCCCCCGCAACACCAACCCCAACCGCAGCATCCCCAACCGCAGCTTATGGCTCAGCAATACCCGCAGCAGCCGACCTCAGCTGACGAGATTAGAACCCTGTGGGTTGGAGATTTGCAGTATTGGATGGATGAGAGTTATCTGCATGGCTGTTTTGGTAATAGCCAAGAGGTTGTTTCTGTTAAAATTATTCGCAATAAACAGACTGGACAATCAGAGGGTTATGGCTTTGTAGAGTTTGCAAGCCATGCAGGAGCTGAAAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTGGCATTGGAGAAAAGCGCCCTGAGATTGGACCTGATTATCCTATATTTGTTGGAGATTTAGCATCTGATGTGACAGACTATTTGTTGCAAGAGACATTCCGAAATAGATACCAAACTGTAAAAGGAGCCAAGGTTGTTACTGATAGGGTTACAGGCCGTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTTCGGGCTATGACAGAGATGAATGGGGTGTTTTGTTCCTCAAGACCTATGCGAATAGGTCCTGCCACAACAAAGAAGACCACAGTTTTTCAGCAACCATATCCGAAACCAGCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTGTGGGTGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAAACAAACAAACTGCTGGGTGGGTTCAACCCCAACAACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAGTAACATTTACTTGGGTTCAGGCTCTTCTGTGGACGTGGAAATATGGGTTCATTCATAGAGCTGTCTCTGTAAACAGTTGTTTTTAACGGGCATCCAATCAACTTATCTATATTAAATTTAATGAAGAGGAAAGTCTCTGGTGACAATAGAACTCGTCTCACCAGATTGAGATCTAGGGAATGTCATTATTGTTTTAAAATAGTTTGCTTGTAGGAACACATTGTGGGTATTTTGTCTCACCACACTCTAGGGCACCATTTCTATAAAATAATTTGCTTGTAGGAACATATTGTGTGTTAGTCATTTGGATTGATGAATTTGGTTATCCAGCTTGCTCATCACAAATTATCTAGCTTGTTTGTCACTTTCACGTTTTTGGTTCCGAGCAAAAAGGTTCAACTTGCAAAATGTGATGTTGTTCGTTCTGCTATGTTAAGTACGTGAGGTCATTGGTTTATTTTACTCGTTGTTCAAGCTAGTCGTAAGATATTGGTGTTTAATTTAGACTGATCGGAACTCATTTGTGTGATCACATTGTAAATTTCATTAATCTTTGAGCTATTAAAAGTGATGTATCAGATGACTTGAAAGTTGCTAATTATTGGCTCTCTTTGAAATAGCCTC

Ace file of the UniGene sp_v3.0_unigene10025

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative DNA binding protein [Trifolium pratense]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11650.2	-	60%
RefSeq	Arabidopsis thaliana	NP_172630.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002316998.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX92

Fln msg:

Fln protein: MMQPTVGVAPPPPVAAPAIDPQQQQQQWMMMQQQMQPQQPQPQPPPQAGFWPPQHQPQPQHPQPQLMAQQYPQQPTSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPATTKKTTVFQQPYPKPAAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQTAGWVQPQQPDPNQWNGAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ*HLLGFRLFCGRGNMGSFIELSL*TVVFNGHPINLSILNLMKRKVSGDNRTRLTRLRSRECHYCFKIVCL*

Protein Length: 488

Fln nts: CGTCGTGACCGTCGTGACCTCAACTCTCATCTTTATCTTCTTTCATTAGCGCAATTTCATTCCCCTTTTTGGCTCCTTCGGAGCTCGCGCAGATTACAGAGAAACCCTAGTCTCGTGGATTCTCGATCGAAATCTGCACGGCCTGTATACAGTCTTAGCACATTCACTGAGCTGCCATAGGTTTCTTGGAACTCTTTGTTCCGCGGCTCTTGCGAGTTTCGCAGGATTTTGTTTGATTGTATTTTGAGGGTTTTTCTTTGCTTCGAGGGTTTTGTTTTCCCGTTTTTGTCCCCTTATTCTTTCAAGACATCTCAGA_-_ATGATGCAGCCAACCGTAGGTGTCGCTCCTCCCCCTCCTGTTGCTGCACCCGCGATCGATCCCCAGCAGCAGCAACAGCAGTGGATGATGATGCAGCAGCAGATGCAGCCTCAGCAGCCTCAGCCTCAGCCGCCTCCTCAGGCTGGGTTTTGGCCCCCGCAACACCAACCCCAACCGCAGCATCCCCAACCGCAGCTTATGGCTCAGCAATACCCGCAGCAGCCGACCTCAGCTGACGAGATTAGAACCCTGTGGGTTGGAGATTTGCAGTATTGGATGGATGAGAGTTATCTGCATGGCTGTTTTGGTAATAGCCAAGAGGTTGTTTCTGTTAAAATTATTCGCAATAAACAGACTGGACAATCAGAGGGTTATGGCTTTGTAGAGTTTGCAAGCCATGCAGGAGCTGAAAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTGGCATTGGAGAAAAGCGCCCTGAGATTGGACCTGATTATCCTATATTTGTTGGAGATTTAGCATCTGATGTGACAGACTATTTGTTGCAAGAGACATTCCGAAATAGATACCAAACTGTAAAAGGAGCCAAGGTTGTTACTGATAGGGTTACAGGCCGTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTTCGGGCTATGACAGAGATGAATGGGGTGTTTTGTTCCTCAAGACCTATGCGAATAGGTCCTGCCACAACAAAGAAGACCACAGTTTTTCAGCAACCATATCCGAAACCAGCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTGTGGGTGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAAACAAACAAACTGCTGGGTGGGTTCAACCCCAACAACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAGTAACATTTACTTGGGTTCAGGCTCTTCTGTGGACGTGGAAATATGGGTTCATTCATAGAGCTGTCTCTGTAAACAGTTGTTTTTAACGGGCATCCAATCAACTTATCTATATTAAATTTAATGAAGAGGAAAGTCTCTGGTGACAATAGAACTCGTCTCACCAGATTGAGATCTAGGGAATGTCATTATTGTTTTAAAATAGTTTGCTTGTAG___GAACACATTGTGGGTATTTTGTCTCACCACACTCTAGGGCACCATTTCTATAAAATAATTTGCTTGTAGGAACATATTGTGTGTTAGTCATTTGGATTGATGAATTTGGTTATCCAGCTTGCTCATCACAAATTATCTAGCTTGTTTGTCACTTTCACGTTTTTGGTTCCGAGCAAAAAGGTTCAACTTGCAAAATGTGATGTTGTTCGTTCTGCTATGTTAAGTACGTGAGGTCATTGGTTTATTTTACTCGTTGTTCAAGCTAGTCGTAAGATATTGGTGTTTAATTTAGACTGATCGGAACTCATTTGTGTGATCACATTGTAAATTTCATTAATCTTTGAGCTATTAAAAGTGATGTATCAGATGACTTGAAAGTTGCTAATTATTGGCTCTCTTTGAAATAGCCTC

Fln Alignment:

Contig10025___TSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPATTKKTTVF-XXXXXXXXXXXXXXXXSDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANK--QTAGWVQPQQPDPNQWN-XXXXXXXXXXXXXXXXXPQPQDPNMY---SYAPYAYGNYQQQ*HLLGFRLFCGRGNMGSFIELSL*TVVFNGHPINLSILNLMKRKVSGDNRTRLTRLRSRECHYCFKIVCL*EHIVGILSHHTL
A9NX92_______________TSADEVRTLWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPKAAAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEMLRQLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQVQTPGWVQPQQPDPNQWNGAAYYGYGQGYDAGYGYAPQPQDPNMYITFTWVQALLWTWKYRFIIRGVCKSCFNGASDQFIYTR-----FNG------------EEVSCDNRTRVTTLRARKSHYCYKIVCVYEHVVGILSHHIL

SNPs (tot: 3)

Position	A %	C %	T %	Probability
128	25	75		0.996473
617	12		87	0.992554
2113		85	14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1389	1401	CAAA CAAA CAAA C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain