SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10018

Length: 1531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10018 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: magnesium transporter MRS2 homolog, mitochondrial isoform 3 [Macaca mulatta]	-	-	1.0e-12	29%
FL-Next	sp=Magnesium transporter MRS2-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	30%

Source	Gene names
Sma3	PHYPADRAFT_169118;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9FLG2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 197 aas, putative chimeric sequence, your sequence is shorter than subject: 53 - 394

Fln protein: IPFHLRMIECMLEETCNFFHQKVERLKIVVEKVLEDLNKMMLIWEGCRGYCL*

Protein Length: 54

Fln nts: CAATTCCATTCCACCTTCGGATGATAGAGTGTATGCTTGAAGAAACATGCAACTTTTTCCATCAAAAGGTTGAAAGGTTGAAGATAGTGGTAGAAAAAGTTCTGGAGGATTTGAACAAAATGATGTTAATATGGGAGGGTTGCAGAGGTTACTGCCTCTGA___AGAGAGTCCTGACTGAAGTGGAGCATGATATCTCTGACACACATGAAGCTATAGAACAGGTTTTGGAAAGTGATGATGCTCTGACTGCACTCTTGCTTGAGGATTCGGAGAATCCAACAACATTATCTGGTGAGGGCAGGACTGTGTCACAACCAGAGCAAGATCATGGTCGGGATAAACTTCGTCGAGCAGCCGCAGACATCATCTTGACATATCAACGCCAGGTTGATGATGCAGGGGGTGTGGTTGAAGAGCTAAGGAAAGGTATTGATTCAGCACAAGAGGTCTGGGAGCTTACATTAGATACAACAAGAAATAAAATAATACGCATGAACCTTTTTATTTCAATGGCGACACTATCGTTTAGCCTAGCCACTGTTCCTGCAAGCTTCTTTGGAATGAACCTGGTTAGTGGGCTGGAGACTTCACCTCATGCATTCTATATCATTTTAGGAGCAACATCTACATCTTCAGTTTTTGTTGGCCTGGGACTTGTTTTCATGTTCCGTAAATCTCTTGGGGGACATCGTGCACAGGATCTCGCAGCTTTACAGGATCTTCTGCGCCACATTGATGATATAGATGAAATTTTCCAGGCCTTGAAATCAAAAGGTTCCTCAGTAAGTGAGGAGGAGTTGAAGAAGCTTCTTCGTTCACATCCCTCTACTGAATCAATGCAAGAGAGAGAGATTGACTTGATGATTCGTATTTTTGACAATCACCGAAATAGCCAACTTGAGACTCGCGAGTGGAGAGCTGTGGCACGGCAACAGTCAAAAGCAAGGGCACAAGGCTGAATTTATGGCTGAATTGATGTTTCTACACATAGTAATACACCCACCCATAACAGTTCCTCTTCAGCAGAATTGTCAAACACTGGAGCAGAAATGCCTTCCTTGGATTAAAGATGATCGGGCATTTCCAAGAGTGCTTGTGGATGAAGATAAAGTTCTAGGGGTTGTAACTGCAATAAATTTTAAGTTGGCAACATCCCTATTCTCCTCGGGATGACTTTAATATAATTTATGCCTTTATTATGGTGTCTAACAATTGTGTGGATATTGTTCCAGAAGGTTCAATGTTTGGTCAGATTGTGGCCCCTTTGGTTAAACTTGAAGCCCTTGCTGTGTTTTCATCACAGATAAGAATCTGTGGTGACTAACTGGTAAAGATTAAATCATTGTTGTGCACACCTACAGGTGCATATAATAAACATTAAGTTGAATATTTCAAAGGTGATCAATTCCCGGGTTCTCTAGATGCAAGGTAATTTTTCTTTTGTAACATGTGAAATTACAAACAATTTTTGGGGCAAGTCCCCCAGTTTTGTCCAAATATTTTTTTATAGAAGTGAAATGGTGATTGAATAT

Fln Alignment:

Contig10018___PFHLRMIECMLEETCNFFHQKVERLKIVVEKVLEDL
Q9FLG2_______________PFEFRALEVALEAICSFLAARTAELETAAYPALDEL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
444		11		88	0.923564
501		33		66	1.0
527			10	90	0.90298
531	10		90		0.90298
532		10	90		0.90298
533	10			90	0.90298
535		10	90		0.90298
536		10	90		0.90298
537	10			90	0.90298
538	10		90		0.90298
539			10	90	0.90298
540	90		10		0.90298
542		10		90	0.90298
568		90		10	0.90298
576	10			90	0.90298
582	10			90	0.90298
583			10	90	0.90298
586		10	90		0.90298
587	10	90			0.90298
589		88	11		0.923564
590	11			88	0.923564
591		11		88	0.923564
627	28		71		1.0
914	16		83		0.994512
915	16			83	0.994512
955	14	85			0.993533
1012	28	71			1.0
1181		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain