SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9984

Length: 2943 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9984
ATGATATGTCTTTATTTTTCTCTGAAAGTAGCTCCGGAATCTTTAAACATTTTTCTCAGAAACCCTAGAAATCCTTGAAACCTTTGTTTTGAGGTTTGCAAGAATAGTTTGTGTGTATTGGTTTTGGTGGGGTTGACAGTCTTTTTGCTGCCATGGGGGTGAAGAGCGATGGTGTTGGAGGTTCCGGGTTCGAGGCCCTCCTAGCCGCTAGAAAATCTCTGGCAAAAACGCTTGAAAAATCAAGGGTTTTGGCCTCTACATTGGAGCAAACGGGGCCCAGGTTGGAAGAACTGAGTAGCCGTTTGCCCGCCCTTGAGGCTGCAGTTTATCCCATGAGGAACCATAAACAAATATTACTCGGGTTAGGGGGGCATATAGACCGTGCAGTTGGCCCTGCTGCTGCTGTTTTGAGGGTTTTTGATGCCGTTCACGGCCTCGAGGAAAGCCTTTTATCCGATCCGCAGTCAGACATTTGGGGCTATTTGGCAGTGGTGAATAGGCTTGAGGAGGCGCTTAAGTTCTTGAGCGAGAATTGCACTGTGGCCACTCAGTGGCTGGAGGACATCGTCGAGTACATTGGTAGGCATAATGTAGGGGAAGTGTGTTATTTGCCCAGATTGAGGGAGTCTCTGGAGGGATTAAGGGCATTGCAGAGGGATCAGGATCGATCCCGGCTTGATGGAGGGTTGCTGGATGTGGCATTGTATAAGCTTGAGGGGGAATTCAGGAGGCTTCTTGTGGAGAATTCTGTGCTTCTCGCCCTTGTCATTGCCCCAGCGACCGGCCTTCGCATAGCTCCTTCGCCGCTGCCGGTACCAGTGGTCAAGAAGTTGCAGGTGATTTTAGAGAGACTGACAGTGAACGATCGGCTTGAGCGCTGCTTGGAGATCTATGTCGATGTCCGGGGAGGCAATGCCAGGGCAAGTTTGGAAGCCTTGCAATTGGATTACCTGCAGGAAGAGTTCATCAGTGTTCTGGGCAAGGACGAGTACATTGATCAGTGGACTCGGCATCTGGAATTTGCAGTGAAGCACTTGTTGGATGCAGAATATAAGCTCTGCGGCGAGGTATATGAGAAAATTGGCCCTGATGTCTGGTTGGGATGCTTCGGCAAGATTGCCCTGCAGGCTGGCATGTTGGGATTCTTGAAGTTTGGGGAAACTGTAGCGAACAGTAAGCAGGATCCGATCAAGCTATTGAAGCTGCTGGATATCTTCGATGGTTTGAATAAGATGAGGCCCGATTTCAATAAGTTGTTTGGAAGCAAAGGCTGCTTTGAGATTCAGAATCGGACGAGGGATCTGGTGAAGATGGTTATTGAAGGTGCCTGCCAAATATTTTGGGAGTTGCTGACACAGGTGGAATTGCAAAGACAGAGACCAGCTCCTTCTGATGGTGGCGTTCCAATGCTGGTAAGTTTTCTTTTGGATTACTGTAATCAGCTGCTAGAGGATCCATATAGATCAATCCTGACCCAGGTACTAGTCATAGAGCGCAGTTGGCGGCGTGAAAGCTTTCAGGAAAGGATTCTTCTTGAGGGAATTGTAAGTATAATCAGAGCTCTGGAGCTCAATATAGAAACATGGTCCAAATGCTATGGAGATCCTGTTCTGTCTCATTTGTTTCTGATGAATAACCATTGGCACTTTTATGTGCATACTAAAGGAACAAAGCTTGGGGATCTTCTTGGAGATGCTTGGTTAATGGAGCATCAGCAGTATAAAGAGTATTATGTTGCAGTGTACTTTAAAGATAGTTGGGGAAAACTCCCAGCCCTCTTGAGCAGAGAGGGTTTGATTCTATTCTCGGGCGGTCGAGCCACTGCTCGGGATCTGCTGAAGCAGAGGCTCAAGGCATTCAATGTAGCTTTTGATGATCTATATAAAAAGCATGCAAAGTGGATCATTCCTGACAAGGAACTTGGGGCGAAAATAGGCCATTTGGCTGTGCAGGCATTGGTTCCGATTTATCGAAGCTATATGCAGAACTATGGTCCTCTGGTGGAGCAGGATGAAAGCCCTAAAAAGTATGCAAAATACACTGCAGAAGACTTGGAGCGCATGTTGGGAGGCCTTTTTCCAACAGAAGACTGTGAAGCCTTTGATTGAACTACCAAAACTTAGCAGGACAGTCACCGTTGGAGGAGCCAACAATGGCATAATCAACAACGGAAAGACTAATATTTTGCGTACCTCTTCTGCAGTTATCTAGTCTATATATTTCGGCAGGGCTACAATATTCAAAGGGGTGTTGATGGGTTTCGATTATTTTCAACTTAGATCAGAAAAATGGAGGAGGTTATGACCTATGTACAGTTTGTAGTCAATAAAGATAAAGACCAGAAAGTTCTTGCCAAAATTGTCACGGAATCGACATTTATGAGCAGCTTCCATGACTATGTACATGCCGTTTCAAGCCTTTTAACCTCTGACCTTTCTTCTAACTGTAGCAGCATCTTCAGAAAGAAGCTCAAAGCTTGTTACCAACATGAAGATTATTTGCTTGAAAAGGAGTTTTTCAGGGATACTGCTCTGACAACTTTTGAGCAGCAAATGAACACAGGAAAACCTGACTAGTTGGATCACTATTCTTTGGTCACTGTTCTGATGAAAATGTGCTAAACTTGCTATTCAATTTGATAGCATGTGCCATGGAAATGAAATCTTCAAGTTTTTATGGTTCAAATGTAACCAAGTGCATTTAGCTCCAGGAAATTCGATAAAAACAATTGACCATTGAGTTTTTGAATTTCTGATTGCCCCAAGGAGCCTCTGTTTTAGATCTCTAACTTGTATTCATTCATTACTCTGAATTCTTTATAGTCCATATTCTTAAGGGCCTTAGATGTTTGGAACTTCAAGCGAATTTGTACTTGGTCACATGCTGCATTCTTGTAAAGAGTTCCTAGCAAAACTTTTGAACATGGAAAATAATCTTTGTTGC

Ace file of the UniGene sp_v3.0_unigene9984 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNN3_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	Chromosome chr9 scaffold_33, whole genome shotgun sequence	-	-	8.098e-06	-

Source	Gene names
Sma3	AT4g31540; At4g31540; EXO70-G1; F3L17.110; GSVIVT00025283001; GSVIVT00025287001; GSVIVT00032320001; OSJNBa0050G13.1; Os02g0149700; Os06g0698600; OsI_05860; OsI_24332; OsJ_05385; OsJ_22509; P0028E05.45; P0479D12.34; P0545E05.6; POPTRDRAFT_563471; POPTRDRAF

Source	GOs	Term	Type	e value	Identity
Sma3	exocyst	GO:0000145	Cellular Component	0.0	-
Sma3	exocytosis	GO:0006887	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31540.1	ATEXO70G1, EXO70G1 exocyst subunit exo70 family protein G1 chr4:15284739-15286802 REVERSE LENGTH=687	59%
RefSeq	Arabidopsis thaliana	NP_194882.2	exocyst complex component 7 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002330756.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg:

Fln protein: MGVKSDGVGGSGFEALLAARKSLAKTLEKSRVLASTLEQTGPRLEELSSRLPALEAAVYPMRNHKQILLGLGGHIDRAVGPAAAVLRVFDAVHGLEESLLSDPQSDIWGYLAVVNRLEEALKFLSENCTVATQWLEDIVEYIGRHNVGEVCYLPRLRESLEGLRALQRDQDRSRLDGGLLDVALYKLEGEFRRLLVENSVLLALVIAPATGLRIAPSPLPVPVVKKLQVILERLTVNDRLERCLEIYVDVRGGNARASLEALQLDYLQEEFISVLGKDEYIDQWTRHLEFAVKHLLDAEYKLCGEVYEKIGPDVWLGCFGKIALQAGMLGFLKFGETVANSKQDPIKLLKLLDIFDGLNKMRPDFNKLFGSKGCFEIQNRTRDLVKMVIEGACQIFWELLTQVELQRQRPAPSDGGVPMLVSFLLDYCNQLLEDPYRSILTQVLVIERSWRRESFQERILLEGIVSIIRALELNIETWSKCYGDPVLSHLFLMNNHWHFYVHTKGTKLGDLLGDAWLMEHQQYKEYYVAVYFKDSWGKLPALLSREGLILFSGGRATARDLLKQRLKAFNVAFDDLYKKHAKWIIPDKELGAKIGHLAVQALVPIYRSYMQNYGPLVEQDESPKKYAKYTAEDLERMLGGLFPTEDCEAFD*

Protein Length: 653

Fln nts: ATGATATGTCTTTATTTTTCTCTGAAAGTAGCTCCGGAATCTTTAAACATTTTTCTCAGAAACCCTAGAAATCCTTGAAACCTTTGTTTTGAGGTTTGCAAGAATAGTTTGTGTGTATTGGTTTTGGTGGGGTTGACAGTCTTTTTGCTGCC_-_ATGGGGGTGAAGAGCGATGGTGTTGGAGGTTCCGGGTTCGAGGCCCTCCTAGCCGCTAGAAAATCTCTGGCAAAAACGCTTGAAAAATCAAGGGTTTTGGCCTCTACATTGGAGCAAACGGGGCCCAGGTTGGAAGAACTGAGTAGCCGTTTGCCCGCCCTTGAGGCTGCAGTTTATCCCATGAGGAACCATAAACAAATATTACTCGGGTTAGGGGGGCATATAGACCGTGCAGTTGGCCCTGCTGCTGCTGTTTTGAGGGTTTTTGATGCCGTTCACGGCCTCGAGGAAAGCCTTTTATCCGATCCGCAGTCAGACATTTGGGGCTATTTGGCAGTGGTGAATAGGCTTGAGGAGGCGCTTAAGTTCTTGAGCGAGAATTGCACTGTGGCCACTCAGTGGCTGGAGGACATCGTCGAGTACATTGGTAGGCATAATGTAGGGGAAGTGTGTTATTTGCCCAGATTGAGGGAGTCTCTGGAGGGATTAAGGGCATTGCAGAGGGATCAGGATCGATCCCGGCTTGATGGAGGGTTGCTGGATGTGGCATTGTATAAGCTTGAGGGGGAATTCAGGAGGCTTCTTGTGGAGAATTCTGTGCTTCTCGCCCTTGTCATTGCCCCAGCGACCGGCCTTCGCATAGCTCCTTCGCCGCTGCCGGTACCAGTGGTCAAGAAGTTGCAGGTGATTTTAGAGAGACTGACAGTGAACGATCGGCTTGAGCGCTGCTTGGAGATCTATGTCGATGTCCGGGGAGGCAATGCCAGGGCAAGTTTGGAAGCCTTGCAATTGGATTACCTGCAGGAAGAGTTCATCAGTGTTCTGGGCAAGGACGAGTACATTGATCAGTGGACTCGGCATCTGGAATTTGCAGTGAAGCACTTGTTGGATGCAGAATATAAGCTCTGCGGCGAGGTATATGAGAAAATTGGCCCTGATGTCTGGTTGGGATGCTTCGGCAAGATTGCCCTGCAGGCTGGCATGTTGGGATTCTTGAAGTTTGGGGAAACTGTAGCGAACAGTAAGCAGGATCCGATCAAGCTATTGAAGCTGCTGGATATCTTCGATGGTTTGAATAAGATGAGGCCCGATTTCAATAAGTTGTTTGGAAGCAAAGGCTGCTTTGAGATTCAGAATCGGACGAGGGATCTGGTGAAGATGGTTATTGAAGGTGCCTGCCAAATATTTTGGGAGTTGCTGACACAGGTGGAATTGCAAAGACAGAGACCAGCTCCTTCTGATGGTGGCGTTCCAATGCTGGTAAGTTTTCTTTTGGATTACTGTAATCAGCTGCTAGAGGATCCATATAGATCAATCCTGACCCAGGTACTAGTCATAGAGCGCAGTTGGCGGCGTGAAAGCTTTCAGGAAAGGATTCTTCTTGAGGGAATTGTAAGTATAATCAGAGCTCTGGAGCTCAATATAGAAACATGGTCCAAATGCTATGGAGATCCTGTTCTGTCTCATTTGTTTCTGATGAATAACCATTGGCACTTTTATGTGCATACTAAAGGAACAAAGCTTGGGGATCTTCTTGGAGATGCTTGGTTAATGGAGCATCAGCAGTATAAAGAGTATTATGTTGCAGTGTACTTTAAAGATAGTTGGGGAAAACTCCCAGCCCTCTTGAGCAGAGAGGGTTTGATTCTATTCTCGGGCGGTCGAGCCACTGCTCGGGATCTGCTGAAGCAGAGGCTCAAGGCATTCAATGTAGCTTTTGATGATCTATATAAAAAGCATGCAAAGTGGATCATTCCTGACAAGGAACTTGGGGCGAAAATAGGCCATTTGGCTGTGCAGGCATTGGTTCCGATTTATCGAAGCTATATGCAGAACTATGGTCCTCTGGTGGAGCAGGATGAAAGCCCTAAAAAGTATGCAAAATACACTGCAGAAGACTTGGAGCGCATGTTGGGAGGCCTTTTTCCAACAGAAGACTGTGAAGCCTTTGATTGA___ACTACCAAAACTTAGCAGGACAGTCACCGTTGGAGGAGCCAACAATGGCATAATCAACAACGGAAAGACTAATATTTTGCGTACCTCTTCTGCAGTTATCTAGTCTATATATTTCGGCAGGGCTACAATATTCAAAGGGGTGTTGATGGGTTTCGATTATTTTCAACTTAGATCAGAAAAATGGAGGAGGTTATGACCTATGTACAGTTTGTAGTCAATAAAGATAAAGACCAGAAAGTTCTTGCCAAAATTGTCACGGAATCGACATTTATGAGCAGCTTCCATGACTATGTACATGCCGTTTCAAGCCTTTTAACCTCTGACCTTTCTTCTAACTGTAGCAGCATCTTCAGAAAGAAGCTCAAAGCTTGTTACCAACATGAAGATTATTTGCTTGAAAAGGAGTTTTTCAGGGATACTGCTCTGACAACTTTTGAGCAGCAAATGAACACAGGAAAACCTGACTAGTTGGATCACTATTCTTTGGTCACTGTTCTGATGAAAATGTGCTAAACTTGCTATTCAATTTGATAGCATGTGCCATGGAAATGAAATCTTCAAGTTTTTATGGTTCAAATGTAACCAAGTGCATTTAGCTCCAGGAAATTCGATAAAAACAATTGACCATTGAGTTTTTGAATTTCTGATTGCCCCAAGGAGCCTCTGTTTTAGATCTCTAACTTGTATTCATTCATTACTCTGAATTCTTTATAGTCCATATTCTTAAGGGCCTTAGATGTTTGGAACTTCAAGCGAATTTGTACTTGGTCACATGCTGCATTCTTGTAAAGAGTTCCTAGCAAAACTTTTGAACATGGAAAATAATCTTTGTTGC

Fln Alignment:

Contig9984___EALLAARKSLAKTLEKSRVLASTLEQTGPRLEELSSRLPALEAAVYPMRNHKQILLGLGGHIDRAVGPAAAVLRVFDAVHGLEESLLSDPQSDIWGYLAVVNRLEEALKFLSENCTVATQWLEDIVEYIGRHNVGEVCYLPRLRESLEGLRALQRDQDRSRLDGGLLDVALYKLEGEFRRLLVENSVL---------LALVIAPATGL----------------RIA----------PSXXXXXXXXXLQVILERLTVNDRLERCLEIYVDVRGGNARASLEALQLDYLQEEFISVLGKDEY---IDQWTRHLEFAVKHLLDAEYKLCGEVYEKIGPDVWLG--CFGKIALQAGMLGFLKFGETVANSKQDPIKLLKLLDIFDGLNKMRPDFNKLFGSKGCFEIQNRTRDLVKMVIEGACQIFWELLTQVELQRQRPAPSDGGVPMLVSFLLDYCNQLLEDPYRSILTQVLVIERSWRRESFQERILLEGIVSIIRALELNIETWSKCYGDPVLSHLFLMNNHWHFYVHTKGTKLGDLLGDAWLMEHQQYKEYYVAVYFKDSWGKLPALLSREGLILF-SGGRAT--------ARDLLKQRLKAFNVAFDDLYKKHAKWIIPDKELGAKIGHLAVQALVPIYRSYMQNYGPLVEQDESPKKYAKYTAEDLERMLGGLF
A9NWM1______________EILTERAHFMRESLNKSRTITDGMVSI---LGSFDHRLSALETAMRPTQVRTHAIRKAHENIDKTLKAAEVILAQFDISRQVEAKIIKGPRDDLESYLAAVDQL--------------------------RNNV----------EFFSSNKSFKSSDGVLTNANNLLAKAMLKLEEEFKQLLSTYSKVVEPERLFECLPNSLRPSSGSPANQGDPNGRKISHHEQIANGTEGSTYTIPTFIPPRIIPQLHDLVRRMVEAGHQQQCLKIYRDTRACVLEQSLRKLGVEKLTKDDVQKMQWEVLEGKIGNWIHFMRIAVKLLFAGERKVCDQIFEDLDP---LGNQCFAEVTMSSVIM-LLSFGEAIAKSKRSPEKLFVLLDMYETMRELLPEIEVIFGGKASAEMREAALSLTKRLAQTAQDTFGDFEEAVEKDATKTSILDGTVHPLTSYVINYVKFLFD--YQSTLKQLFQENGNGGPSNSQ---LAAATMRIMSALQTNLDGKSKQYKDPALTQLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANHYRRNAWGKILQCLTVQGLSSSGSGGLGTDGSTSSSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDNGKNPQKYIKYTAEDLDRMLGEFF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2229	66			33	0.997452
2247	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2539	2550	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain