SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9980

Length: 1104 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9980

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transformer serine/arginine-rich ribonucleoprotein [Oryza sativa Japonica Group] gb\|EAZ26366.1\| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group]	-	-	7.00005e-41	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Putative transformer-SR ribonucleoprotein	-	-	3.175e-12	-

Source	Gene names
Sma3	At1g07350; At4g35785; B1090H08.54; GSVIVT00002571001; GSVIVT00012366001; GSVIVT00024167001; LOC_Os03g15890; OJ1012B02.15; Os03g0265600; Os06g0724600; Os08g0385900; OsI_10866; OsI_24503; OsJ_10248; OsJ_22698; OsJ_27155; P0434E03.1; P0535F09.37-1; P0548E04.

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Splicing factor PWI	IPR002483	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07350.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr1:2257732-2260101 REVERSE LENGTH=382	1.99965e-42	72%
RefSeq	Arabidopsis thaliana	NP_563787.2	RNA recognition motif-containing protein [Arabidopsis thaliana]	3.00018e-42	72%
RefSeq	Populus trichocarpa	XP_002304510.1	predicted protein [Populus trichocarpa]	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Z8

Fln msg: STOP codon was not found. Distance to subject end: 79 aas, your sequence is longer than subject: 276 - 216

Fln protein: MSYSGRGRYDSYSPPRGNRSLSRSYSRSRSRSRSRDSVDVANPGNNLYVTGLSPRITKRDLEDHFSREGKVVECHLVVDPRTRESRGFGFVTMATSEDADRCIKYLNRSVLEGRVITVEKAKRKRGRTPTPGKYLGVRPTRVRDYDRRRTYSRSSDFHSSRRSPSYSPYRGDRYGSPRYSPYDDRSYGRDRSVSPYRRRDRSYSPYGRRYRSRSPYSRRDRSLSPYSRRERSISPYSRREQSISPNGRRERSISPYYSRRERSLSPYDRRNGALRR

Protein Length: 277

Fln nts: TATGGGGATTTCATCATCCCATTCCGTTGGGGGTCTCTGTGGAAGGCGTTTGCGTGGAAACTGTCAGCTTGATAACAGAGATCTGACATTATCTATTGGCCTGCGCATTGGGTTTTCTTAGCATCTCTGATTTTTGAAGTTTTAACGGCTTGTGCGATCTTTTGGCGTTGCTTTTAGGGTTTTACGGCGACCTAATTTTTTCCAGGGTAAGCTAGGGTTTCATTTGTGGGAAGGTCGAAGACATCTTCTACCGGAGTCTCTTCTGCAAGCTACC_-_ATGTCGTACTCGGGGAGAGGGAGGTATGATTCATATTCACCGCCAAGGGGTAATCGTTCTCTGTCAAGGTCATATTCAAGATCTCGGAGCCGTTCCAGGAGCCGTGACTCAGTGGATGTGGCAAATCCTGGAAACAACCTTTATGTCACGGGTTTGTCTCCTCGAATTACTAAAAGGGATCTTGAAGATCACTTCTCTAGAGAAGGAAAGGTTGTGGAGTGCCATCTTGTCGTTGATCCTCGTACCCGGGAATCACGTGGTTTTGGATTTGTTACAATGGCCACCTCTGAAGATGCAGATCGTTGTATTAAATATTTGAATCGATCTGTTTTAGAAGGCCGTGTTATTACTGTTGAGAAGGCAAAAAGGAAGCGGGGAAGGACTCCTACACCTGGCAAGTACCTGGGCGTGAGGCCAACAAGAGTGCGTGACTATGACAGGCGACGTACATACAGCAGATCCAGTGATTTTCATAGTTCACGTCGCTCTCCAAGTTATTCTCCATACAGGGGAGACCGATATGGCTCACCTCGATATTCGCCATATGATGACAGGAGTTATGGACGAGACAGGTCAGTGAGTCCTTATAGAAGGCGGGATAGGTCTTACTCTCCATATGGCAGGAGGTATAGGTCCCGCTCTCCTTACAGTAGGCGGGATCGCTCACTATCACCTTACAGCAGGAGGGAGCGGTCAATATCCCCTTACAGCAGGAGGGAGCAGTCAATATCCCCTAACGGCAGGAGAGAGCGGTCAATATCCCCTTATTACAGCAGGAGAGAGCGGTCTCTATCTCCATATGATAGGAGGAATGGAGCACTACGTCGAGG

Fln Alignment:

Contig9980___DVANPGNNLYVTGLSPRITKRDLEDHFSREGKVVECHLVVDPRTRESRGFGFVTMATSEDADRCIKYLNRSVLEGRVITVEKAKRKRGRTPTPGKYLG
D5A7Z8______________DVSNPGNNLYVTGLSARVVEADLEELFSQEGKVVDCRIVVDPRSRESRGFGFVTMDTLENADRCVKYLNRSTLEGRIITVEKAKRKRARTPTPGSYLG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
598	33	66			1.0
618		8		91	0.999807
722			90	9	0.90298
850	33			66	0.997452
853			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain