SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9971

Length: 1575 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leaf and flower related protein [Arabidopsis thaliana] dbj\|BAB02090.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL60013.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20062.1\| unknown protein [Arabidopsis thaliana] gb\|AEE76703.1\| leaf and flowe	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	At3g22990; GSVIVT00020105001; OSJNBb0018L13.27; OSJNBb0024A20.6; Os07g0609700; OsI_26829; OsJ_25084; PHYPADRAFT_107954; PHYPADRAFT_213492; POPTRDRAFT_832828; RCOM_0910220; VITISV_003946;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DC1	IPR004146	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	C1-like	IPR011424	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G22990.1	LFR ARM repeat superfamily protein chr3:8164015-8166145 FORWARD LENGTH=460	64%
RefSeq	Arabidopsis thaliana	NP_566721.1	leaf and flower related protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002311651.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P0

Fln msg:

Fln protein: MDQNSKRIVMALQSGLKSELTWALNTLTVLSFKEKEDLRKDSTPLAKLPGVLDALLQVVDDWRDIAHPREAAKLARPRVLGANCVFTGFGSEYEITSPNDPLSRIRSVSDALTSEDRGDGTKSRGSDWWYDEEGLFNLDEEGRAERQQCAVAASNVIRNFSFMPDNESVMAQHRHCLETIVQCMEDHDTEDEELVTNAIETIVNLAPFLNLRIFSSSKASHAPITEKRAVEAIVGMLESPVKAWHCAAAELVGRLIVNPDNEPFVLPFAPQVYKRLVDLLSFPGADAQAAAVAALYNLAEVNMDCRLRLANERWAIGRLLKIIQSPHPLSEVCRKAALTIESLACEPQNRAQLLTYENKFAEIAFSDARLSDTFARILYELTSRANSKLGAVRGVWGV*

Protein Length: 400

Fln nts: ACATGGGGGCGGACGCCCTTACAGTGGACATTCTGCGGTATTTCAACTGTAATACCTGAACTTCACCCTCATGAGATTTGCAGCTGCAGGCTCTTTAATGCTGTTATAATAGCTGAATCCTTAAAGAAGAAGGGGCCACTTCGCAGCAGGCTATTTTCCACTTCCTGTCTAGAGGGTTTGAGCATCATCATCATCGAATCATTGAATCGGCA_-_ATGGATCAGAACAGTAAAAGAATTGTCATGGCACTACAGAGTGGGTTAAAGAGTGAGCTGACATGGGCCTTAAATACTCTTACAGTGCTGTCCTTCAAAGAAAAAGAGGATCTTCGAAAAGATTCTACTCCTCTTGCAAAGCTACCCGGAGTTTTGGATGCCCTTTTGCAAGTTGTTGATGATTGGCGTGATATTGCACACCCAAGGGAGGCTGCAAAACTGGCCAGGCCAAGGGTTTTGGGAGCAAATTGTGTCTTCACAGGTTTTGGCTCTGAATATGAAATAACAAGCCCGAATGATCCACTTTCACGCATCAGGTCAGTATCTGATGCTTTAACTTCAGAGGACAGAGGAGATGGTACTAAAAGTAGGGGTTCTGATTGGTGGTATGATGAAGAGGGATTGTTCAACCTTGATGAAGAGGGCCGAGCAGAGAGACAGCAATGTGCTGTTGCTGCTTCAAATGTTATACGCAATTTTTCCTTTATGCCAGATAATGAGTCAGTAATGGCTCAACATCGGCATTGCCTTGAGACAATTGTTCAGTGCATGGAAGACCATGATACTGAGGACGAGGAACTTGTCACAAATGCAATCGAGACAATTGTCAACCTGGCACCCTTTCTGAATTTGCGAATCTTCAGTTCGTCGAAGGCATCACATGCTCCCATAACTGAGAAGAGGGCAGTTGAGGCAATCGTGGGTATGCTAGAGTCACCTGTTAAAGCTTGGCACTGTGCTGCTGCGGAGTTGGTTGGAAGACTGATTGTCAATCCAGATAACGAACCATTTGTTCTTCCTTTTGCACCTCAGGTGTATAAGCGCTTAGTTGATCTACTGAGTTTTCCTGGGGCAGATGCACAGGCAGCAGCTGTAGCCGCCCTTTACAATCTTGCAGAGGTCAATATGGACTGCCGATTGAGGCTTGCTAATGAACGCTGGGCAATAGGGAGACTTCTAAAGATAATTCAGTCACCTCATCCTCTATCAGAAGTATGCCGGAAAGCTGCATTGACGATAGAAAGTCTGGCATGTGAGCCTCAAAACAGAGCTCAACTATTGACCTATGAAAACAAGTTTGCCGAAATTGCTTTCTCTGATGCACGCCTCTCTGATACCTTTGCAAGGATATTGTATGAGTTGACTTCAAGGGCCAACTCTAAACTGGGGGCAGTTCGTGGTGTATGGGGAGTATAG___TTTGTGGATTCTCTGGGATTCTGACTCAGCTTTTAGGATGTTGCCTCTTTTGAAATTTGGGGACTTGTGAGATTGTAAATGAGCAACATTGGAAAATAATGTATTATGAGTTTATTGGTATTTTTGCCCTTTTCCATGCCTTTTGTGTTTTTAGGTGTGTAAGCAT

Fln Alignment:

Contig9971___MDQNSKRIVMALQSGLKSELTWALNTLTVLSFKEKEDLRKDSTPLAKLPGVLDALLQVVDDWRDIAHPREAAKLARPRVLGANCVFTGFGSEYEITSPNDPLSRIRSVSDALTSEDRGDGTKSRGSDWWYDEEGLFNLDEEGRAERQQCAVAASNVIRNFSFMPDNESVMAQHRHCLETIVQCMEDHDTEDEELVTNAIETIVNLAPFLNLRIFSSSKASHAPITEKRAVEAIVGMLESPVKAWHCAAAELVGRLIVNPDNEPFVLPFAPQVYKRLVDLLSFPGXXXXXXXXXXLYNLAEVNMDCRLRLANERWAIGRLLKIIQSPHPLSEV-CRKAALTIESLACEPQNRAQLLTYENKFAEIAFSDARLSDTFARILYELTSRANSKLGAVRGVWGV
D5A9P0______________MDQNSKRIVMALQSGLKSELTWALNTLTVLSFKEKEDLRKDATPLAKLPGVLDALLQVVDDWRDIAHPREAAKMTRPRVLGANCVFTGFGSEYEITSPNDPLSRIRSVSDALTSEDTGNGTKSRGSDWWYDEEGLFNLDEEGRAERQQCAVAASNVIRNFSFMPDNETVMAQHRHCLETIIQCMEDHDTEDEELVTNAIETIANLAPFLNLRIFSSSKPSHAPITKKRAVEAIVGMLESPVKAWHCAAAELVGRLIVNPDNEPFVLPFAPQVYKRLVDLLSFPGADAQAAAVAALYNLAEVNMDCRLRLANERWAIGRLLKIIQSPHPLSEVLCRKAALTIESLACEPQNRAQLLTYENKFAEIAFSDARLSDTFARILYELTSRANSKLGAVRGVWGV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
25		66	33		0.997452
26			33	66	1.0
27		66	33		0.997452
50		33	66		0.997452
137		33		66	0.997452
238	25			75	0.996473
260	25		75		0.996473
458	83			16	0.994512
537	83		16		0.994512
582	83	16			0.994512
584			83	16	0.994512
899	25		75		0.996473
953	14		85		0.993533
954		14		85	0.993533
955	14		85		0.993533
956		85		14	0.993533
1001	81	12	6		0.999943
1095	13	86			0.999973
1258	7	76			0.999983
1259	38	23			1.0
1351	11		88		0.923564
1352		11		88	0.923564
1355			88	11	0.923564
1385	20		80		0.995493
1386	20		80		0.995493
1387			80	20	0.995493
1389		80	20		0.995493
1390	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
183	195	CAT CAT CAT CAT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain