SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9966

Length: 2154 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene9966
ATGGGGATTGATCGATTTTTCAGTTCATTATTTTCAGCTTCTAGAAGCAGGAATGTCTCTTATTTCTGCTGTGCCGTTGGCCTCCTCGTGCTTGTCCAAATCTTTGATCAGTTCTGTTCGTGAGCATAAGGCTCTCGGTAGAGCAATCGCAACACTGCAAATGTCTAGGCCAGGAAAATCTGTGGCGGCTTCCACCAGGATGAGTTCGGCCACTGCCGGATCTGATGATGGCGTAAAAAGGCGCATAGGCGATTATCATTCTAACCTGTGGGACGACAATTTCATACAATCTCTCTCATCACCTTATGGGGCATCTTCGTACGGTGAGCATGCTGACAGACTTATTGGGGAAGTGAAGGAGATTTTCAACTCATTTTCGATTGCAGATGGAGAATTAACCAGTCCTGTCAATGATCTTCTTCAACAGCTTTGGATGGTCGATAATGTTGAACGTTTGGGGATCGACAGACATTTCCAAACTGAAATAAAAGTTGCTCTTGACTATGTTTACAGATATTGGAGCGAGAAAGGCATTGGATGTGGGAGGGATAGTGCTTTTACCGATCTCAACACAACTGCCCTGGGGTTTCGAATTTTTCGACTGCATGGATATTCTGTGTCTTCGGATGCATTTGAACACTTTAAAGACCAAAAGGAAGAGTTTACCGCTTCCGCCAATGATACAGAGTTGCAGACAAGAAGCGTTTTTAATTTATTTCGAGCTTCTCTGATTGCTTTTCCCGAGGAAAAAGTTCTGGAAGAGGCTGAAAAATTCGCTGCTGCATATTTAAAAGCAGCCCTACAAACCCTTCCTGTCTCGGGCCTTTCACGAGAAATACAATACGTTTTCGATTATCGTTGGCACTCAAATTTGCCTAGACTGGAAGCTAGGAGTTACATCGACATCCTTTCAGATAATACGATCAGTGGAACGCCAGATGCGAACACTAAAAAATTCTTAGAACTGGCGAAATTGGAGTTCAATATTTTCCATTCTCTACAACAGAAAGAGTTACAATGTCTGTGGAGATGGTGGAAAGAATGGGGTTGCCCAGAACTAACCTTCGTTCGACATCGTTACGTGGAATTCTACACTTTGGTCTCTGGCATTGACATGGTGCCTGAACATGCTACATTCAGACTGAGCTTTGTTAAAACGTGCCATCTTATCACGATTCTGGACGACATGTACGACACCTTCGGAACAATTGACGAGCTCCGACTCTTCACAGCCGCGGTTAAGAGATGGGATCCGTCGGCGACGGAGTGCCTTCCTGAATATATGAAAGGAGTGTACATGGTGCTTTACGAAACCGTAAATGAAATGGCGAAAGAAGCACAGAAATCACAAGGCCGAGACACGCTCGGCTATGTTCGACAGGCTTTGGAGGATTATATCGGTGGTTATCTTAAAGAAGCAGAGTGGATCGCAACGGGTTATGTGCCAACGTTTCAGGAGTACTTCGAGAACGGGAAACTCAGTTCTGGTCATCGCATAGCGACACTGCAACCCATACTCACATTGAGTATTCCCTTTGCTCATCATATCCTGCAGGAAATTGACTTTCCGTCCAAATTCAATGATTATGCGTGTTCCATCCTTCGATTACGAGGTGACACGCGGTGTTACCAGGCGGACAGTGCTCGTGGAGAAGAAGCTTCGTGTATATCGTGCTATATGAAAGAAAATCCCGGGTCAACACAGGAAGATGCTCTGAATCATATCAACGGTATGATCGAAGACATGATCAAAAAATTAAATTGGGAGTTTCTTAGACCGGACAACAATGCTCCAATATCTTCCAAGAAGCATGCTTTTAACATTAGCAGAGGTTTACATCACTTCTACAACTACCGAGATGGCTACAGTGTTGCCAGCAACGAAACTAAGGATCTGGTGATCAAAACCGTTCTTGAACCTGTGCTTATGTAACCACATATCAACATACCAGATTTACATTAAGTTATACCTAGTCTACGTTACTTTAGGTTATGTGTTTTATTATTGTACTTTTCGGACTCTTTGGTCGTATAGGCCTAGGCCTAGGCCTAGGCTGCAAAGGTGTTTCAGGACCTTGCAATGGTGAAAATTGATAAAGATGGCAATGTTGTATTAAAGGAAATAAAACCCGCCGGTCAGTTTTACGAAAAAAA

Ace file of the UniGene sp_v3.0_unigene9966 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(+)-3-carene synthase n=5 Tax=Picea RepID=F1CKI8_PICSI	-	-	76%
FL-Next	sp=Carene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa).	-	-	80%
Sma3	3-carene synthase	-	-	-

Source	Gene names
Sma3	JF67;

Source	GOs	Term	Type	Identity
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q84SM8

Fln msg:

Fln protein: MSLISAVPLASSCLSKSLISSVREHKALGRAIATLQMSRPGKSVAASTRMSSATAGSDDGVKRRIGDYHSNLWDDNFIQSLSSPYGASSYGEHADRLIGEVKEIFNSFSIADGELTSPVNDLLQQLWMVDNVERLGIDRHFQTEIKVALDYVYRYWSEKGIGCGRDSAFTDLNTTALGFRIFRLHGYSVSSDAFEHFKDQKEEFTASANDTELQTRSVFNLFRASLIAFPEEKVLEEAEKFAAAYLKAALQTLPVSGLSREIQYVFDYRWHSNLPRLEARSYIDILSDNTISGTPDANTKKFLELAKLEFNIFHSLQQKELQCLWRWWKEWGCPELTFVRHRYVEFYTLVSGIDMVPEHATFRLSFVKTCHLITILDDMYDTFGTIDELRLFTAAVKRWDPSATECLPEYMKGVYMVLYETVNEMAKEAQKSQGRDTLGYVRQALEDYIGGYLKEAEWIATGYVPTFQEYFENGKLSSGHRIATLQPILTLSIPFAHHILQEIDFPSKFNDYACSILRLRGDTRCYQADSARGEEASCISCYMKENPGSTQEDALNHINGMIEDMIKKLNWEFLRPDNNAPISSKKHAFNISRGLHHFYNYRDGYSVASNETKDLVIKTVLEPVLM*

Protein Length: 628

Fln nts: ATGGGGATTGATCGATTTTTCAGTTCATTATTTTCAGCTTCTAGAAGCAGGA_-_ATGTCTCTTATTTCTGCTGTGCCGTTGGCCTCCTCGTGCTTGTCCAAATCTTTGATCAGTTCTGTTCGTGAGCATAAGGCTCTCGGTAGAGCAATCGCAACACTGCAAATGTCTAGGCCAGGAAAATCTGTGGCGGCTTCCACCAGGATGAGTTCGGCCACTGCCGGATCTGATGATGGCGTAAAAAGGCGCATAGGCGATTATCATTCTAACCTGTGGGACGACAATTTCATACAATCTCTCTCATCACCTTATGGGGCATCTTCGTACGGTGAGCATGCTGACAGACTTATTGGGGAAGTGAAGGAGATTTTCAACTCATTTTCGATTGCAGATGGAGAATTAACCAGTCCTGTCAATGATCTTCTTCAACAGCTTTGGATGGTCGATAATGTTGAACGTTTGGGGATCGACAGACATTTCCAAACTGAAATAAAAGTTGCTCTTGACTATGTTTACAGATATTGGAGCGAGAAAGGCATTGGATGTGGGAGGGATAGTGCTTTTACCGATCTCAACACAACTGCCCTGGGGTTTCGAATTTTTCGACTGCATGGATATTCTGTGTCTTCGGATGCATTTGAACACTTTAAAGACCAAAAGGAAGAGTTTACCGCTTCCGCCAATGATACAGAGTTGCAGACAAGAAGCGTTTTTAATTTATTTCGAGCTTCTCTGATTGCTTTTCCCGAGGAAAAAGTTCTGGAAGAGGCTGAAAAATTCGCTGCTGCATATTTAAAAGCAGCCCTACAAACCCTTCCTGTCTCGGGCCTTTCACGAGAAATACAATACGTTTTCGATTATCGTTGGCACTCAAATTTGCCTAGACTGGAAGCTAGGAGTTACATCGACATCCTTTCAGATAATACGATCAGTGGAACGCCAGATGCGAACACTAAAAAATTCTTAGAACTGGCGAAATTGGAGTTCAATATTTTCCATTCTCTACAACAGAAAGAGTTACAATGTCTGTGGAGATGGTGGAAAGAATGGGGTTGCCCAGAACTAACCTTCGTTCGACATCGTTACGTGGAATTCTACACTTTGGTCTCTGGCATTGACATGGTGCCTGAACATGCTACATTCAGACTGAGCTTTGTTAAAACGTGCCATCTTATCACGATTCTGGACGACATGTACGACACCTTCGGAACAATTGACGAGCTCCGACTCTTCACAGCCGCGGTTAAGAGATGGGATCCGTCGGCGACGGAGTGCCTTCCTGAATATATGAAAGGAGTGTACATGGTGCTTTACGAAACCGTAAATGAAATGGCGAAAGAAGCACAGAAATCACAAGGCCGAGACACGCTCGGCTATGTTCGACAGGCTTTGGAGGATTATATCGGTGGTTATCTTAAAGAAGCAGAGTGGATCGCAACGGGTTATGTGCCAACGTTTCAGGAGTACTTCGAGAACGGGAAACTCAGTTCTGGTCATCGCATAGCGACACTGCAACCCATACTCACATTGAGTATTCCCTTTGCTCATCATATCCTGCAGGAAATTGACTTTCCGTCCAAATTCAATGATTATGCGTGTTCCATCCTTCGATTACGAGGTGACACGCGGTGTTACCAGGCGGACAGTGCTCGTGGAGAAGAAGCTTCGTGTATATCGTGCTATATGAAAGAAAATCCCGGGTCAACACAGGAAGATGCTCTGAATCATATCAACGGTATGATCGAAGACATGATCAAAAAATTAAATTGGGAGTTTCTTAGACCGGACAACAATGCTCCAATATCTTCCAAGAAGCATGCTTTTAACATTAGCAGAGGTTTACATCACTTCTACAACTACCGAGATGGCTACAGTGTTGCCAGCAACGAAACTAAGGATCTGGTGATCAAAACCGTTCTTGAACCTGTGCTTATGTAA___CCACATATCAACATACCAGATTTACATTAAGTTATACCTAGTCTACGTTACTTTAGGTTATGTGTTTTATTATTGTACTTTTCGGACTCTTTGGTCGTATAGGCCTAGGCCTAGGCCTAGGCTGCAAAGGTGTTTCAGGACCTTGCAATGGTGAAAATTGATAAAGATGGCAATGTTGTATTAAAGGAAATAAAACCCGCCGGTCAGTTTTACGAAAAAAA

Fln Alignment:

Contig9966___EHKALGRAIATLQMSRPGKSVAASTRMSSATAGSDDGVKRRIGDYHSNLWDDNFIQSLSSPYGASSYGEHADRLIGEVKEIFNSFSIADGELTSPVNDLLQQLWMVDNVERLGIDRHFQTEIKVALDYVYRYWSEKGIGCGRDSAFTDLNTTALGFRIFRLHGYSVSSDAFEHFKDQKEEFTASANDTELQTRSVFNLFRASLIAFPEEKVXXXXXXXXXXXXXXXLQTLPVSGLSREIQYVFDYRWHSNLPRLEARSYIDILSDNTISGTPDANTKKFLELAKLEFNIFHSLQQKELQCLWRWWKEWGCPELTFVRHRYVEFYTLVSGIDMVPEHATFRLSFVKTCHLITILDDMYDTFGTIDELRLFTAAVKRWDPSATECLPEYMKGVYMVLYETVNEMAKEAQKSQGRDTLGYVRQALEDYIGGYLKEAEWIATGYVPTFQEYFENGKLSSGHRIATLQPILTLSIPFAHHILQEIDFPSKFNDYACSILRLRGDTRCYQADSARGEEASCISCYMKENPGSTQEDALNHINGMIEDMIKKLNWEFLRPDNNAPISSKKHAFNISRGLHHFYNYRDGYSVASNETKDLVIKTVLEPVLM
Q84SM8______________ELKALCRPIATLGMCRRGKSVMASKSTSLTTAVSDDGVQRRIGDHHSNLWDDNFIQSLSSPYGASSYGERAERLIGEVKEIFNSLSRTDGELVSHVDDLLQHLSMVDNVERLGIDRHFQTEIKVSLDYVYSYWSEKGIGSGRDIVCTDLNTTALGFRILRLHGYTVFPDVFEHFKDQMGRIACSDNHTERQISSILNLFRASLIAFPGEKVMEEAEIFSATYLKEALQTIPVSSLSQEIQYVLQYRWHSNLPRLEARTYIDILQENTKNQMLDVNTKKVLELAKLEFNIFHSLQQNELKSVSRWWKESGFPDLNFIRHRHVEFYTLVSGIDMEPKHCTFRLSFVKMCHLITVLDDMYDTFGTIDELRLFTAAVKRWDPSTTECLPEYMKGVYTVLYETVNEMAQEAQKSQGRDTLSYVRQALEAYIGAYHKEAEWISSGYLPTFDEYFENGKVSSGHRIATLQPTFMLDIPFPHHVLQEIDFPSKFNDFACSILRLRGDTRCYQADRARGEEASCISCYMKDNPGSTQEDALNHINNMIEETIKKLNWELLKPDNNVPISSKKHAFDINRGLHHFYNYRDGYTVASNETKNLVIKTVLEPVPM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1514	40		60		1.0
1659	33		66		0.997452
1727		33		66	0.997452
1974	16		83		0.994512
1985	83	16			0.994512
2006		14	85		0.993533
2149		14		14	0.999974

SSRs (tot: 1)

Start position	End position	Sequence	Length
100	122	GCCTAG GCCTAG GCCTAG GCCTA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain