SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9946

Length: 1885 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene9946 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB45312.1\| putative protein [Arabidopsis thaliana] emb\|CAB79710.1\| putative protein [Arabidopsis thaliana] gb\|AEE85639.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Saposin B	IPR008139	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29520.1	" LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins in 50 species: Archae - 2; Bacter	51%
RefSeq	Arabidopsis thaliana	NP_194681.1	uncharacterized protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002330518.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P283

Fln msg:

Fln protein: MAIFRGLGFLFIFAVLSGQAMGAPKKPIAVARKEDIPYIKCGVCEQIVKQLDRQVTSKRNQIAPKRLSEYEIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECRTIERTCQEVIGYHDTDVAEYLFKSKAQSSALLKFLCNDLSKACSVKPPPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEGEDDEEDEDDDYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHMKDQTQHAVIGAKRSLNRISNKIRKWYKGRKSGSKPSKSEKVDL*

Protein Length: 314

Fln nts: ATGGGTCCCAACAAACTTGAATACATTTGACTTCGTCTTTAAGCTATCTTTCTTCAGCAGATCTGGTCATTCTTCGCAAACTCGTGAGTCGCCCTCGAGAATAAGTCGAATTAAAAATTCCGCGACCGCTTGGACTTTAATGGGAACGCAACCATAATGATTCAGAGACCGTAAAAACTCGTGTGTACGTGTATATAATGATTCAGAGACCGTAATTCGTGCAGAGACGCAGGAACAGTTTAGAAACTCTGGAGATTTTGCAGCGAAAGGCC_-_ATGGCGATTTTTCGTGGCTTAGGGTTTTTATTCATTTTCGCTGTACTCTCAGGCCAAGCAATGGGTGCCCCGAAAAAACCCATTGCAGTCGCTCGAAAAGAAGACATTCCTTACATTAAATGTGGAGTCTGCGAACAGATTGTCAAACAACTCGATCGTCAAGTGACGAGCAAACGCAATCAGATCGCCCCCAAGCGGCTCTCAGAATACGAGATTATAGAAGTAGCTGAAAATATTTGTAATCTGAAGAAGGAGGAGGGTGATTGGCTGCTTCATCTCGATATTGTGGAAGACGGGGACAAATTGAAGCTTGTTGAACAAGAGCAAGAGGGAGATTGTAATGCAGAGTGCAGGACCATAGAACGAACTTGCCAAGAGGTGATTGGATATCATGATACTGATGTTGCAGAATATTTATTTAAAAGCAAGGCTCAAAGTTCTGCGTTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCTTGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGCCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCTATGTCTGGCATGCCTGGAGCATCGAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGGTGAGGATGATGAGGAGGATGAAGATGATGATTACACTTCTTCTAGAATGAGAAACATTAAAAAACCTGTGGTGTCTGTAGAAAGTGATTGGAAGAAAAGTTTAATTGACGGAGTCCAATCCTCATTTGCTCATATGAAAGATCAAACTCAACATGCAGTTATTGGTGCAAAGCGGAGTCTTAACAGAATATCTAACAAAATAAGGAAGTGGTATAAAGGAAGGAAGTCTGGTTCCAAGCCTTCAAAATCCGAAAAGGTTGACTTGTAA___CTTTTTGACTATGAAATATTTAATGTTTTATCTGGATAAAAAGATTGAACTTGGAGTAGTTGTTATCCAATGGTTAGTAGATTGTTTTTCCCTCCTCTTTATCCATTTGTGGGTATTCTGGTTAAAACAGAAAAGGAGAATGGCAATAAATTTTTCTGGCCTGGAAGGCACTTATAGAGACAGATAGTGAAGGGTTGAAGCCTTTTTACACAATTTCTTAGTGGGGACTAATTTTTAATCTAGGATTCAATCCATTGATCTCTATGTATCCAATACTATTCTAGAGAGACTGGCCAGATTGGTTCTTCATCTCTTGTATCTTTTTATATTCCCCTTGAGATATGACAAGTGGTTTTGATCGTGGATTTTTGTCAAGCAGCAAGATGCCAATTAAAAGTTTCTGAAGATGAGACTATCTGCATTAGATGGCCGAGTCTTATGTTAAAGCTTATCATGTCCCTGGATAAGTATTGATTTTCAATGGTGAAATTATGAAAATTGAAATGCAACTTATGGGAGCATCACATCCTAATATTTCTGTGATGGGACATACGAATCGATTCTATTGTTACTGGAGTACTTCTGTTTGTTAGTGTTGGAAATTGTCACTAGTTGATCTCAGTCCTAAAGGACCTATTTATAAAAATGTTTTAGAATGTATCGCAATAATGTCA

Fln Alignment:

Contig9946___AMAIFRGLGFLFIFAVLSGQAMGAPKKPIAVARKEDIPYIKCGVCEQIVKQLDRQVTSKRNQIAPKRLSEYEIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECRTIERTCQEVIGYHDTDVAEYLFKSKAQSSALLKFLCNDLSKACSVKPPPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNXXXXXXXXXXXXDYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHMKDQTQHAVIGAKRSLNRISNKIRKWY
A9P283______________AMARFLGLGFLFVFAVIAGQAMAAPKKPIAVARREDIPYIKCGVCEQIVKQLDRQVTSIRNQIAPKRLSEYQIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECKTIERTCQEVIGYHDTDVAEFLFKSEPQSSSLLKFLCNDLSRACSVKPPPVPKDRTPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEDEDDEEDEDDDYTSSRMRNTKRPLVSVESDWKKSLLDRVQSTFSNVKDRTQHAVLGAKWSLDRISDKIRKWY

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
94	33			66	0.997452
195		25		75	0.996473
306		80		20	0.995493
333		80	20		0.995493
335		20		80	0.995493
337			20	80	0.995493
345			80	20	0.995493
346		20	80		0.995493
348	60	20			0.99255
349			20	80	0.995493
351		20		80	0.995493
352	40		20		1.0
353	80		20		0.995493
427			20	80	0.995493
432			20	80	0.995493
435	20			80	0.995493
438	80		20		0.995493
440		20		80	0.995493
442	80	20			0.995493
443	80		20		0.995493
445	60	20			0.99255
446			20	80	0.995493
524	80			20	0.995493
525	80		20		0.995493
527			20	80	0.995493
529			20	80	0.995493
531		20		80	0.995493
532	20			80	0.995493
537	25			75	0.996473
538			25	75	0.996473
539		75	25		0.996473
543			20	80	0.995493
544	20			80	0.995493
545		20		80	0.995493
546			20	80	0.995493
615		90		10	0.90298
616	90		10		0.90298
618		90	10		0.90298
622	10			90	0.90298
628			10	90	0.90298
632	90	10			0.90298
633			10	90	0.90298
646	88		11		0.923564
665	90	10			0.90298
666		10		90	0.90298
667	90	10			0.90298
668	10		90		0.90298
840	61	38			1.0
841		38		61	1.0
842		38		61	1.0
844	61			38	1.0
967			14	85	0.993533
1258		16		83	0.994512
1419		80		20	0.995493
1422	25			75	0.996473
1423	25			75	0.996473
1425			66	33	0.997452
1426		33	66		0.997452
1428	33		66		0.997452
1435		33	66		0.997452
1437	33	33		33	0.997753
1439	33		66		0.997452
1441	33		66		0.997452
1442	33			66	0.997452
1443	33			66	0.997452
1445		33	66		0.997452
1446	33	66			0.997452
1447	33			66	0.997452
1449	33		66		0.997452
1451		66		33	0.997452
1492	33	66			0.997452
1494		66		33	0.997452
1495	66		33		0.997452
1625		90		10	0.90298
1640	90		10		0.90298
1666		10	90		0.90298
1703		77		22	0.999999
1711			22	77	0.999999
1717	22	77			0.999999
1722		15		84	0.999986
1732	15			84	0.999986
1735			84	15	0.999986
1789		83		16	0.999991
1820		18	81		0.999994
1821	81	18			0.999994
1825			81	18	0.999994
1841	71		28		1.0
1857		28	71		1.0
1860	85	14			0.993533
1861	85	14			0.993533
1884	33	66			0.997452
1885		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain