SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9943

Length: 2165 nt

UniGene Fasta

>sp_v3.0_unigene9943
ATGGGGATATTGACCCCCGTATTGCCTTAGTATCGCGGCTTCCCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCAAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAAATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGATAAAAGCCGCTTCCACTTTGTTCACGCAGCAGTGACCATCATAGGAGATTCAGCAATTTTACTTCTTCGAGCATTACCATTCCTTTGGCAGAAATCAGAAGTTGTAGTTGCAAACTTGGGCTTAGATCCTCATAATGAAATCATTCATACACTCGTATTTTTAGCAGCTGTTACTCTTTGGTCTCAGTTGATAGATCTGCCTTTTTCACTGTATTCAACTTTTGTCATTGAGGCTCGACATGGATTCAATAAACAAACGATTTGGCTTTTTCTCAGAGATATGGTTGTGGGTCTGGGCCTTTCAGTTTTACTTGGGCCACCAATTGTTTCAGCAATAATCATAATTGTGCAGAAAGGAGGTCCATATTTAGCAATATACCTTTGGGCCTTCATGCTTATACTATCACTAGTGATGATGTCTTTATATCCTATTCTTATAGCTCCACTCTTCAACAAGTTCACTCCTCTTCCGGAAGGGGAGCTTAGGTCGAATATTGAAAGGCTAGCATCATCTCTAAAGTTTCCGTTGAAGAAGCTATTTGTGATTGATGGTTCAACAAGATCGACACACAGCAATGCATACATGTATGGATTTTACAAGAACAAGCGTATAGTGATATATGACACCTTGATTCAGCAGTGCAAAAATGAGGAGGAAGTTGTTGCAGTTATTGCCCATGAATTGGGCCATTGGAAGCTCAATCATACAATGTATTCCTTTATTGCCATGCAGGTGCTTACACTATTACAATTTGGTGGCTATACTCTTGTTCGGAATTCAAAAGATCTCTTTGAAAGCTTTGGTTTCCAATCCCAACCTGTACTTGTGGGGCTTCTTATTTTCCAGCATACCATAATGCCTATTCATCATCTTGTGAGCTTTGCTCTCAATCTTGTCAGTCGAGCATTTGAGTTCCAGGCTGATGGTTTTGCAAAGAAACTTGGCTATGGTGCTCCTCTCCGAGCAGGGCTTATTAAGTTGCAGGAGGAAAATTTATCGGCTATGAATACTGATCCCTGGTATTCAGCATATCATTATTCTCACCCTCCTCTTGTAGAGAGGCTTGCAGCATTGGACAGGTCTGATGAAAAAGAGGATTAGGATTTGTTTGTGGGGTTTCATGTATATCCTTTTAATTCCTCGATATCTGCATGCATTTATATCATATCTGGGGTCCTGAATGCCTTGTTGCAGCCGATTTTGACTAATAGCAGAAAGCTGCTCGATGACCAAAATGTTGCTTCAGTAGCAACGAGGGTATATTATAGTTGGTTGTTTGAGTGGCAGATGTATAAAGTCAGCACTGCATTGCCTTTACATGTTCTGTAATAACAATGAATGTTTCAATTTTGCATGATAATAATGTTGCGTCCTATGTTTAGACATTGTTATAAAACTTAAGTTCGATGAAGTTGAAAGTTCCTCTTATTTTTCCGTGTGTGACAAATCATTTAGTAATGTTGACTTTTGAATGGTTTGGCGTTAGAAATTATAGGCGGCCAACTTTTAGCTCAAATGTAATTGAATTATATAAGGGCCTCTTAATTAAAAAATAAGTTAACATGAGCGAAAGATACTAAGAAATTGAAATTTGAAGCATGCACGTGAGCTTTACTTTGAATTCTGCAATAAGGAAAATTCCAAGTGTGAAATAATCCCACTGGCACGATGATTGTAATATATAGTGTTTCCTTATCAGATCACATAACATTTTGTGCATCATTTGTATGAGGTTTGATTGACGAGATGAAGCAAGAGTTAATTTAACATTAACTGTGCTTGATATGAACCGACAATTGAGGTTAGCTAAAAGTTATAATACC

Ace file of the UniGene sp_v3.0_unigene9943

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CAAX prenyl protease 1-like protein [Arabidopsis thaliana] sp\|Q8RX88.1\|FACE1_ARATH RecName: Full=CAAX prenyl protease 1 homolog; AltName: Full=Farnesylated proteins-converting enzyme 1; Short=AtFACE-1; Short=FACE-1; AltName: Full=Prenyl protein-specific e	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Chromosome chr15 scaffold_40, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00026916001;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G01320.1	ATSTE24, STE24 Peptidase family M48 family protein chr4:545905-549002 FORWARD LENGTH=424	77%
RefSeq	Arabidopsis thaliana	NP_567212.1	CAAX prenyl protease 1-like protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002302601.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9E7

Fln msg: your sequence is longer than subject: 425 - 228

Fln protein: MAFPYLEAVVGFMIFMYFIETYLDLRQHTSLKLPHLPKPLKGVVSQDKFEKSRAYSIDKSRFHFVHAAVTIIGDSAILLLRALPFLWQKSEVVVANLGLDPHNEIIHTLVFLAAVTLWSQLIDLPFSLYSTFVIEARHGFNKQTIWLFLRDMVVGLGLSVLLGPPIVSAIIIIVQKGGPYLAIYLWAFMLILSLVMMSLYPILIAPLFNKFTPLPEGELRSNIERLASSLKFPLKKLFVIDGSTRSTHSNAYMYGFYKNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFIAMQVLTLLQFGGYTLVRNSKDLFESFGFQSQPVLVGLLIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKKLGYGAPLRAGLIKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDRSDEKED*

Protein Length: 426

Fln nts: ATGGGGATATTGACCCCCGTATTGCCTTAGTATCGCGGCTTCCCCGGCACCCAACTCAACTGGAGATCAGGTCCACTGCGTCCCATTCTTTTACTAGTTGGCCCTTTATTCGCTACAGAACGAGGCAAGGCGAGGCGAGGCGAGGCCTGTCTTGGATTGGTCTAAAAA_-_ATGGCGTTTCCCTATTTGGAAGCTGTTGTTGGTTTCATGATCTTCATGTACTTCATTGAGACATACCTTGACTTGAGGCAACATACGTCACTTAAGCTTCCTCATCTGCCTAAGCCTTTAAAAGGAGTGGTGAGTCAGGATAAGTTTGAAAAATCTCGAGCTTACAGCATTGATAAAAGCCGCTTCCACTTTGTTCACGCAGCAGTGACCATCATAGGAGATTCAGCAATTTTACTTCTTCGAGCATTACCATTCCTTTGGCAGAAATCAGAAGTTGTAGTTGCAAACTTGGGCTTAGATCCTCATAATGAAATCATTCATACACTCGTATTTTTAGCAGCTGTTACTCTTTGGTCTCAGTTGATAGATCTGCCTTTTTCACTGTATTCAACTTTTGTCATTGAGGCTCGACATGGATTCAATAAACAAACGATTTGGCTTTTTCTCAGAGATATGGTTGTGGGTCTGGGCCTTTCAGTTTTACTTGGGCCACCAATTGTTTCAGCAATAATCATAATTGTGCAGAAAGGAGGTCCATATTTAGCAATATACCTTTGGGCCTTCATGCTTATACTATCACTAGTGATGATGTCTTTATATCCTATTCTTATAGCTCCACTCTTCAACAAGTTCACTCCTCTTCCGGAAGGGGAGCTTAGGTCGAATATTGAAAGGCTAGCATCATCTCTAAAGTTTCCGTTGAAGAAGCTATTTGTGATTGATGGTTCAACAAGATCGACACACAGCAATGCATACATGTATGGATTTTACAAGAACAAGCGTATAGTGATATATGACACCTTGATTCAGCAGTGCAAAAATGAGGAGGAAGTTGTTGCAGTTATTGCCCATGAATTGGGCCATTGGAAGCTCAATCATACAATGTATTCCTTTATTGCCATGCAGGTGCTTACACTATTACAATTTGGTGGCTATACTCTTGTTCGGAATTCAAAAGATCTCTTTGAAAGCTTTGGTTTCCAATCCCAACCTGTACTTGTGGGGCTTCTTATTTTCCAGCATACCATAATGCCTATTCATCATCTTGTGAGCTTTGCTCTCAATCTTGTCAGTCGAGCATTTGAGTTCCAGGCTGATGGTTTTGCAAAGAAACTTGGCTATGGTGCTCCTCTCCGAGCAGGGCTTATTAAGTTGCAGGAGGAAAATTTATCGGCTATGAATACTGATCCCTGGTATTCAGCATATCATTATTCTCACCCTCCTCTTGTAGAGAGGCTTGCAGCATTGGACAGGTCTGATGAAAAAGAGGATTAG___GATTTGTTTGTGGGGTTTCATGTATATCCTTTTAATTCCTCGATATCTGCATGCATTTATATCATATCTGGGGTCCTGAATGCCTTGTTGCAGCCGATTTTGACTAATAGCAGAAAGCTGCTCGATGACCAAAATGTTGCTTCAGTAGCAACGAGGGTATATTATAGTTGGTTGTTTGAGTGGCAGATGTATAAAGTCAGCACTGCATTGCCTTTACATGTTCTGTAATAACAATGAATGTTTCAATTTTGCATGATAATAATGTTGCGTCCTATGTTTAGACATTGTTATAAAACTTAAGTTCGATGAAGTTGAAAGTTCCTCTTATTTTTCCGTGTGTGACAAATCATTTAGTAATGTTGACTTTTGAATGGTTTGGCGTTAGAAATTATAGGCGGCCAACTTTTAGCTCAAATGTAATTGAATTATATAAGGGCCTCTTAATTAAAAAATAAGTTAACATGAGCGAAAGATACTAAGAAATTGAAATTTGAAGCATGCACGTGAGCTTTACTTTGAATTCTGCAATAAGGAAAATTCCAAGTGTGAAATAATCCCACTGGCACGATGATTGTAATATATAGTGTTTCCTTATCAGATCACATAACATTTTGTGCATCATTTGTATGAGGTTTGATTGACGAGATGAAGCAAGAGTTAATTTAACATTAACTGTGCTTGATATGAACCGACAATTGAGGTTAGCTAAAAGTTATAATACC

Fln Alignment:

Contig9943___MSLYPILIAPLFNKFTPLPEGELRSNIERLASSLKFPLKKLFVIDGSTRSTHSNAYMYGFYKNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFIAMQVLTLLQFGGYTLVRNSKDLFESFGFQSQPVLVGLLIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKKLGYGAPLRAGLIKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDRSDEKED
D5A9E7______________MSLYPILIAPLFNKFTPLPEGGLRLKIERLASTLKFPLKKLFVIDGSTRSTHSNAYMYGFYNNKRIVIYDTLIQQCKNEEEVVAVIAHELGHWKLNHTMYSFVAMQVLTLLQFGGYTLVRNSKDLFESFGFQTQPVLVGLLIFQHTIMPIHHLVSFALNLVSRAFEFQADGFAKNLGYGAPLRAGLIKLQEENLSTMNTDPWYSAYHYSHPPLVERLAALDRSDKKEE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1777		70		30	1.0
1834	90		10		0.90298
1896	25			50	0.995533
1911		25	75		0.996473
1915	20		80		0.995493
1917	20			80	0.995493
1956		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
128	146	AGGCG AGGCG AGGCG AGGC	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain