SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9907

Length: 1612 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene9907

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase 2, beta polypeptide [Arabidopsis thaliana] sp\|O80507.1\|CSK2E_ARATH RecName: Full=Putative casein kinase II subunit beta-4; Short=CK II beta-4 gb\|AAC27470.1\| putative casein kinase II beta subunit [Arabidopsis thaliana] gb\|AAM65621.1\| putativ	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	protein kinase CK2 complex	GO:0005956	Cellular Component	0.0	-
Sma3	protein kinase CK2 regulator activity	GO:0008605	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44680.1	CKB4 casein kinase II beta subunit 4 chr2:18426898-18428166 REVERSE LENGTH=283	63%
RefSeq	Arabidopsis thaliana	NP_181996.1	casein kinase 2, beta polypeptide [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002327022.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2P6

Fln msg:

Fln protein: MLKNKGSMRGGGSGARYGLNTGDFNTKSLKSPVTLERSPTYGSKKRSENASTSTPKGKDPKFALHSPPEEISDTESEETDLSGSEGDDTSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPRVCCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTAGAGGAAAGAAGTACGCTTATTTGTTCAACCATTCAATTTACAGGGAGCAGGGAACAAACGGACGGACGAGGGTTGAAAGGGGTTTGGCAAAAGAGAAAT_-_ATGTTGAAAAACAAGGGGTCCATGCGAGGTGGAGGATCAGGGGCAAGATATGGGTTAAATACAGGTGATTTTAATACCAAATCTCTGAAATCTCCGGTGACTCTGGAGCGATCCCCCACTTATGGTTCCAAAAAACGTTCAGAGAATGCCTCTACATCTACTCCGAAAGGGAAGGACCCCAAGTTCGCTCTTCACTCTCCACCAGAAGAAATTTCAGACACGGAGAGTGAAGAGACAGATCTTAGTGGTTCTGAGGGAGATGACACATCTTGGATTTCCTGGTTTTGTGGATTAAAAGGAAATGAGTTCTTCTGTGAAATTGATGAAGATTATATACATGATGAATTTAATTTATGCGGTCTTAGTGGACAAGTGCCCTACTATGACTATGCCCTTGATATGATTCTTGACAATGATGCTTTGAGTGGGGATATAGATAGTGAAGAGCAGAATGAAATGGTAGAGTCTGCAGCAGAATTATTGTATGGGCTAATTCATCTTCGCTATATCTTGACAAGTAAAGGGCTGAATGCTATGCTTGAAAAATACAAGAGAGTTGATTTTGGAAGATGCCCAAGAGTTTGTTGTGGAGGGCAACCGTGCCTGCCTGCAAGTCAGTCAGACATTCCTCGACAGGGCACTGTGAAGATCTATTGTCCGAAATGTGAAGATCTGTATTACCCAAGGTCTAAATATCAGATTAATATTGATGGAGCTTATTTTGGAACTACGTTTCCACATCTATTTCTGATGACCTATCCAACAGTGAAGCCACCCAAACCTGTGCAAACATATGTTCCACGTGTATATGGCTTCAAACTGCACCAGAGTGCCAGGTAG___CCGGTGTTCATGGCTATAGAAAGATTGACGCAAGTAAAATGCCATTTATATTGAAATTATTGGAATTTACTGCAGGCATTTGGAATTCTGATGGTTGGAATTGAAACAAGTTTGATGTCAAATGACATCAATTTATTCATTTTAAGAGGCCCCTTTTAAAGTCATTAATTTCAAGGGGGTTCCTTTTTGAAGTCGGCTTAATGGCTGGTTGGCTCTTTATTTTTATATCTGCCATTCTTATTTAAGTTCTTAGCAGCTTCTGCAAGCTCAATTCTACTCAAACGTGTCAACATTCAGGTGCAGTTCCCTGCTCTTTTTGTAACATAATGTTCTAATCGATGTTAGTAGATGATTTGGTTTTATCACGCCTGAAATGATCCTTCAGGAATGGATACATTTGTTGCAGAGCATTCATTCGTATTGATTTGGTTGCAAAAGATGTTGTTTTCTGAAATGATTATGGGTGGTTTTTATATTAGAAAATGGAATACACTTTTCCATTAACATCATTGTGTAGCATAAAGATGCCCCAGTGAAAGGTTTGAGTATGCAAAGGGGTTTCTAAAGGTACGCTAAGTTCTCCAAACAAAACTCCTGTTCTTATCCTCAAACAGTATATTTATGGTTTTGTTTCTCATTTTTCA

Fln Alignment:

Contig9907___MLKNKGSMRGGG-----SGARYGLNTGDFNTKSLKSPVTLERSPTYGSKKRSENASTSTPKGKDPKFALHSPPXXXXXXXXXXXXXXXXXXXXTSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPRVCCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR
A9P2P6______________MLKNKGSMRGGGGTSGGSGARYGLNTGDFNTKSLKSSVTLERSPTYASKKRSENASTSAPKGKDPKLALHSTPEEISDTESEETDLSGSEGDDSSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPRVCCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1509			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain